Wall clock time and date at job start Tue Mar 31 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.78182 * 2 1 4 4 C 1.54326 * 110.71955 * 123.23859 * 2 1 3 5 5 N 1.47022 * 107.39867 * 96.24681 * 4 2 1 6 6 C 1.34780 * 125.64458 * 178.82715 * 5 4 2 7 7 O 1.21282 * 120.00014 * 354.96253 * 6 5 4 8 8 C 1.50698 * 119.99894 * 174.96027 * 6 5 4 9 9 C 1.53179 * 109.54208 * 266.80898 * 8 6 5 10 10 C 1.53089 * 109.16319 * 183.15094 * 9 8 6 11 11 O 1.42904 * 109.41423 * 57.61446 * 10 9 8 12 12 C 1.42903 * 114.09431 * 298.83880 * 11 10 9 13 13 C 1.53088 * 109.41573 * 61.16137 * 12 11 10 14 14 C 1.47424 * 108.70875 * 358.86479 * 5 4 2 15 15 C 1.54912 * 104.82647 * 24.12592 * 14 5 4 16 16 H 1.09005 * 111.00079 * 81.06883 * 15 14 5 17 17 N 1.46898 * 111.00022 * 204.91347 * 15 14 5 18 18 C 1.46898 * 111.00399 * 273.55138 * 17 15 14 19 19 C 1.50701 * 109.47373 * 180.02562 * 18 17 15 20 20 O 1.21291 * 119.99699 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00095 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99802 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00379 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99859 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00022 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99689 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47214 * 60.00265 * 26 24 22 28 28 H 1.48507 * 109.46661 * 179.97438 * 26 24 22 29 29 H 1.48490 * 109.47291 * 299.99801 * 26 24 22 30 30 H 1.08996 * 109.47131 * 298.21697 * 1 2 3 31 31 H 1.09004 * 109.46994 * 58.21718 * 1 2 3 32 32 H 1.08994 * 109.47334 * 178.21097 * 1 2 3 33 33 H 1.08997 * 109.88102 * 336.75716 * 4 2 1 34 34 H 1.08999 * 109.88291 * 215.73868 * 4 2 1 35 35 H 1.08995 * 109.54646 * 27.07248 * 8 6 5 36 36 H 1.09003 * 109.52336 * 303.06074 * 9 8 6 37 37 H 1.08999 * 109.52435 * 63.24785 * 9 8 6 38 38 H 1.08993 * 109.48296 * 297.62768 * 10 9 8 39 39 H 1.09002 * 109.49331 * 177.59622 * 10 9 8 40 40 H 1.09004 * 109.48002 * 301.17607 * 12 11 10 41 41 H 1.08999 * 109.49060 * 181.14773 * 12 11 10 42 42 H 1.09005 * 109.52365 * 182.48550 * 13 12 11 43 43 H 1.08993 * 109.57969 * 62.32468 * 13 12 11 44 44 H 1.09000 * 110.36461 * 142.96322 * 14 5 4 45 45 H 1.08999 * 110.36381 * 265.29164 * 14 5 4 46 46 H 1.00902 * 111.00145 * 37.50975 * 17 15 14 47 47 H 1.09004 * 109.47162 * 300.00059 * 18 17 15 48 48 H 1.08995 * 109.47163 * 60.00140 * 18 17 15 49 49 H 0.97001 * 120.00199 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 2.3743 -2.1534 0.7416 6 6 2.8909 -3.1452 1.4940 7 8 3.2348 -2.9240 2.6358 8 6 3.0411 -4.5290 0.9165 9 6 1.8007 -5.3623 1.2534 10 6 1.9961 -6.7881 0.7313 11 8 3.1779 -7.3473 1.3081 12 6 4.3758 -6.6369 0.9879 13 6 4.2760 -5.2050 1.5202 14 6 2.0157 -2.2547 -0.6848 15 6 2.0791 -0.8001 -1.2137 16 1 3.1058 -0.5104 -1.4379 17 7 1.2173 -0.6300 -2.3911 18 6 1.9310 -0.9925 -3.6228 19 6 1.0173 -0.8050 -4.8065 20 8 -0.1167 -0.4080 -4.6404 21 7 1.4606 -1.0776 -6.0498 22 6 0.6292 -0.9075 -7.1266 23 1 -0.3808 -0.5548 -6.9786 24 6 1.0860 -1.1890 -8.4083 25 7 2.3147 -1.6188 -8.5883 26 14 -0.0466 -0.9566 -9.8755 27 1 -0.4740 0.4636 -9.9508 28 1 0.6751 -1.3226 -11.1207 29 1 -1.2409 -1.8255 -9.7214 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0271 -0.0321 33 1 1.3262 -0.8255 1.9977 34 1 2.9853 -0.3191 1.5793 35 1 3.1542 -4.4623 -0.1655 36 1 1.6603 -5.3860 2.3341 37 1 0.9244 -4.9184 0.7810 38 1 2.0959 -6.7674 -0.3538 39 1 1.1347 -7.3971 1.0056 40 1 4.5068 -6.6142 -0.0940 41 1 5.2288 -7.1367 1.4469 42 1 5.1700 -4.6485 1.2386 43 1 4.1861 -5.2245 2.6063 44 1 2.7338 -2.8821 -1.2128 45 1 1.0078 -2.6548 -0.7950 46 1 0.3660 -1.1632 -2.2961 47 1 2.8074 -0.3544 -3.7362 48 1 2.2451 -2.0348 -3.5674 49 1 2.3676 -1.3948 -6.1827 50 1 2.6336 -1.8156 -9.4830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502698976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:45 Heat of formation + Delta-G solvation = -144.958072 kcal Electronic energy + Delta-G solvation = -30190.616112 eV Core-core repulsion = 26023.253567 eV Total energy + Delta-G solvation = -4167.362545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71265 -40.37891 -39.86870 -38.93053 -36.15403 -35.47967 -34.84923 -33.36130 -33.13209 -32.11888 -29.95026 -28.29994 -27.68499 -26.39637 -25.70771 -24.58475 -23.78379 -21.79642 -21.13269 -20.62114 -20.16463 -19.89543 -18.50764 -17.81009 -17.53319 -17.11971 -16.98413 -16.80054 -16.36429 -16.12169 -15.92670 -15.76186 -15.41583 -15.28342 -15.19790 -14.71025 -14.52982 -14.23623 -14.12944 -13.93800 -13.66657 -13.54649 -13.40756 -13.30315 -13.13327 -13.10433 -12.81591 -12.60133 -12.40504 -12.32858 -12.11948 -12.00908 -11.82047 -11.77558 -11.62069 -11.55015 -11.47038 -11.00979 -10.48668 -10.30324 -9.98318 -9.80351 -9.30920 -8.44294 -5.92307 1.41362 1.43925 1.45253 1.53858 1.81830 2.09732 2.30850 2.86726 2.93989 3.23731 3.28811 3.41811 3.58229 3.65027 3.69620 3.73719 3.94568 3.97942 4.05212 4.17494 4.19931 4.25239 4.36987 4.44350 4.44583 4.53087 4.55549 4.59364 4.63380 4.67643 4.68948 4.72607 4.78036 4.82193 4.90786 4.97488 5.00721 5.03433 5.16274 5.23272 5.32283 5.43687 5.49340 5.89602 6.10751 6.22154 6.33934 6.40821 6.63279 7.01523 7.15965 7.60515 8.15714 8.72703 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.002489 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.778132 B =11245.277837 C =12899.122504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.531 3.469 7 O -0.581 6.581 8 C -0.103 4.103 9 C -0.138 4.138 10 C 0.062 3.938 11 O -0.403 6.403 12 C 0.061 3.939 13 C -0.137 4.137 14 C 0.069 3.931 15 C 0.085 3.915 16 H 0.105 0.895 17 N -0.658 5.658 18 C 0.063 3.937 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.271 1.271 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.350 0.650 47 H 0.106 0.894 48 H 0.074 0.926 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -7.198 17.719 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.119 0.881 4 C -0.013 4.013 5 N -0.343 5.343 6 C 0.321 3.679 7 O -0.461 6.461 8 C -0.125 4.125 9 C -0.176 4.176 10 C -0.015 4.015 11 O -0.322 6.322 12 C -0.015 4.015 13 C -0.175 4.175 14 C -0.056 4.056 15 C -0.027 4.027 16 H 0.123 0.877 17 N -0.290 5.290 18 C -0.070 4.070 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.812 3.188 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.170 0.830 47 H 0.124 0.876 48 H 0.092 0.908 49 H 0.231 0.769 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.330 -6.408 18.329 19.893 hybrid contribution -0.069 -0.482 -0.868 0.995 sum 4.260 -6.889 17.461 19.248 Atomic orbital electron populations 1.21646 0.93778 1.01699 1.02242 1.22211 0.96888 0.99578 0.91595 0.88073 1.22115 1.00293 0.81575 0.97277 1.48461 1.62267 1.11776 1.11758 1.20710 0.75746 0.86493 0.84942 1.90677 1.51380 1.83955 1.20127 1.21404 0.98216 0.90422 1.02411 1.22084 0.96689 0.96563 1.02279 1.22699 0.88268 0.92636 0.97878 1.87926 1.15928 1.53488 1.74859 1.22715 0.87656 0.90627 1.00495 1.22057 0.96942 0.97160 1.01359 1.23332 1.01805 0.99974 0.80487 1.22877 0.97876 0.92331 0.89578 0.87672 1.60093 1.07106 1.62201 0.99619 1.21617 0.96070 1.01434 0.87837 1.20892 0.89010 0.82577 0.84914 1.90505 1.22364 1.52100 1.85941 1.41922 1.15023 1.59012 1.05128 1.19607 0.96981 1.43696 0.85916 0.90336 1.25967 0.97944 0.96301 1.00888 1.69649 1.16690 1.45208 1.24535 0.85053 0.77960 0.78765 0.76984 1.19892 1.19694 1.19655 0.91885 0.92084 0.93238 0.91601 0.91483 0.87144 0.92020 0.89367 0.91336 0.87291 0.91355 0.87330 0.89984 0.91916 0.88805 0.90419 0.82965 0.87624 0.90806 0.76939 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.11 71.98 0.58 -1.96 16 2 C -0.08 -1.45 3.58 -9.52 -0.03 -1.48 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.11 2.05 6.44 86.73 0.56 2.61 16 5 N -0.61 -11.64 3.33 -811.79 -2.70 -14.34 16 6 C 0.53 11.89 6.87 87.66 0.60 12.49 16 7 O -0.58 -17.68 16.51 -3.04 -0.05 -17.73 16 8 C -0.10 -1.72 2.29 -11.42 -0.03 -1.74 16 9 C -0.14 -2.13 5.40 30.68 0.17 -1.97 16 10 C 0.06 0.85 6.84 72.01 0.49 1.34 16 11 O -0.40 -7.27 10.77 -148.98 -1.60 -8.87 16 12 C 0.06 0.86 6.84 72.01 0.49 1.35 16 13 C -0.14 -2.29 5.11 30.68 0.16 -2.13 16 14 C 0.07 1.09 5.84 86.86 0.51 1.60 16 15 C 0.08 1.54 3.12 46.39 0.14 1.69 16 16 H 0.11 1.78 7.92 -2.38 -0.02 1.76 16 17 N -0.66 -16.67 5.07 -487.97 -2.47 -19.15 16 18 C 0.06 1.78 6.04 85.56 0.52 2.30 16 19 C 0.44 19.00 7.82 87.66 0.69 19.69 16 20 O -0.62 -32.08 15.78 -3.07 -0.05 -32.13 16 21 N -0.57 -27.53 5.29 -306.98 -1.62 -29.16 16 22 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 23 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 24 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 25 N -0.92 -47.89 13.05 21.66 0.28 -47.61 16 26 Si 0.99 41.58 29.55 68.60 2.03 43.61 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.40 7.64 -2.39 -0.02 1.38 16 32 H 0.05 0.92 7.46 -2.39 -0.02 0.90 16 33 H 0.07 1.28 7.84 -2.39 -0.02 1.27 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.41 6.42 -2.39 -0.02 1.39 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 43 H 0.06 1.34 7.75 -2.39 -0.02 1.33 16 44 H 0.09 1.22 6.86 -2.39 -0.02 1.20 16 45 H 0.08 1.21 7.39 -2.39 -0.02 1.19 16 46 H 0.35 9.40 7.35 -89.69 -0.66 8.74 16 47 H 0.11 2.71 8.09 -2.38 -0.02 2.69 16 48 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.40 17.99 7.90 -92.71 -0.73 17.26 16 50 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -70.32 397.80 -0.50 -70.81 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.44 Total: 38.16 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.13 Total: 16.41 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.51 Total: -110.25 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -1.70 Total: -58.74 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -70.32 -0.50 -70.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502698976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.144 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds