Wall clock time and date at job start Tue Mar 31 2020 23:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.83408 * 2 1 4 4 C 1.54995 * 110.90756 * 236.35389 * 2 1 3 5 5 O 1.44378 * 103.49093 * 204.78133 * 4 2 1 6 6 C 1.43746 * 106.97824 * 40.05812 * 5 4 2 7 7 H 1.09000 * 109.87910 * 92.91178 * 6 5 4 8 8 C 1.50701 * 109.88036 * 213.91722 * 6 5 4 9 9 O 1.21274 * 119.99723 * 3.53949 * 8 6 5 10 10 N 1.34776 * 119.99817 * 183.54942 * 8 6 5 11 11 C 1.46500 * 119.99923 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47247 * 179.97438 * 11 10 8 13 13 N 1.46901 * 109.47378 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00417 * 169.99995 * 13 12 11 15 15 C 1.50694 * 109.47110 * 283.96051 * 14 13 12 16 16 O 1.21287 * 120.00064 * 4.46564 * 15 14 13 17 17 N 1.34782 * 120.00178 * 184.47396 * 15 14 13 18 18 C 1.37093 * 120.00403 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99919 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00174 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47386 * 89.99658 * 22 20 18 24 24 H 1.48499 * 109.47319 * 209.99973 * 22 20 18 25 25 H 1.48504 * 109.46668 * 329.99981 * 22 20 18 26 26 C 1.46900 * 110.99840 * 293.95785 * 13 12 11 27 27 C 1.53008 * 117.49699 * 247.78582 * 26 13 12 28 28 C 1.53001 * 59.99892 * 252.50628 * 27 26 13 29 29 C 1.54109 * 107.29023 * 333.48834 * 6 5 4 30 30 H 1.08997 * 109.47437 * 182.19568 * 1 2 3 31 31 H 1.09005 * 109.46919 * 302.19971 * 1 2 3 32 32 H 1.09001 * 109.47123 * 62.18953 * 1 2 3 33 33 H 1.09004 * 110.61387 * 323.27627 * 4 2 1 34 34 H 1.08999 * 110.62434 * 86.11812 * 4 2 1 35 35 H 0.97001 * 120.00069 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.47120 * 299.99631 * 11 10 8 37 37 H 1.09002 * 109.47118 * 59.99477 * 11 10 8 38 38 H 1.09004 * 109.47220 * 300.00134 * 12 11 10 39 39 H 1.09002 * 109.47028 * 59.99986 * 12 11 10 40 40 H 1.09009 * 109.47012 * 43.95502 * 14 13 12 41 41 H 1.08999 * 109.47302 * 163.95685 * 14 13 12 42 42 H 0.97002 * 119.99452 * 359.97438 * 17 15 14 43 43 H 0.97003 * 119.99853 * 180.02562 * 21 20 18 44 44 H 1.09005 * 115.55389 * 33.48605 * 26 13 12 45 45 H 1.08993 * 117.49699 * 359.97438 * 27 26 13 46 46 H 1.09004 * 117.49928 * 145.01779 * 27 26 13 47 47 H 1.08998 * 117.49726 * 252.51378 * 28 27 26 48 48 H 1.08996 * 117.49737 * 107.48716 * 28 27 26 49 49 H 1.08996 * 110.48416 * 243.34925 * 29 6 5 50 50 H 1.08996 * 110.48358 * 120.70935 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8022 -1.2053 5 8 3.3940 -1.2144 -0.7626 6 6 3.2718 -1.5883 0.6200 7 1 3.0825 -2.6588 0.6992 8 6 4.5363 -1.2356 1.3600 9 8 5.4336 -0.6565 0.7854 10 7 4.6700 -1.5639 2.6603 11 6 5.8995 -1.2216 3.3796 12 6 5.7936 -1.7022 4.8282 13 7 7.0262 -1.3583 5.5496 14 6 6.8732 -1.5876 6.9925 15 6 6.0463 -0.4796 7.5923 16 8 5.5581 0.3686 6.8759 17 7 5.8495 -0.4312 8.9247 18 6 5.0977 0.5770 9.4705 19 1 4.6635 1.3328 8.8327 20 6 4.8943 0.6266 10.8440 21 7 5.4231 -0.2927 11.6202 22 14 3.8694 2.0000 11.5876 23 1 2.4457 1.5812 11.6422 24 1 4.3530 2.2905 12.9612 25 1 3.9947 3.2200 10.7502 26 6 8.1737 -2.1048 5.0167 27 6 8.8113 -3.1610 5.9217 28 6 9.5418 -1.8444 5.6503 29 6 2.0824 -0.8013 1.2039 30 1 -0.3634 -1.0269 0.0394 31 1 -0.3633 0.5476 0.8697 32 1 -0.3633 0.4795 -0.9090 33 1 1.4561 -1.6704 -1.4087 34 1 2.1556 -0.1673 -2.0884 35 1 3.9521 -2.0269 3.1200 36 1 6.7492 -1.7049 2.8973 37 1 6.0400 -0.1407 3.3650 38 1 4.9440 -1.2185 5.3103 39 1 5.6529 -2.7830 4.8431 40 1 6.3750 -2.5430 7.1578 41 1 7.8558 -1.6038 7.4641 42 1 6.2398 -1.1098 9.4976 43 1 5.2808 -0.2583 12.5791 44 1 8.1454 -2.3095 3.9464 45 1 8.3795 -3.3016 6.9126 46 1 9.2024 -4.0609 5.4469 47 1 10.4135 -1.8780 4.9968 48 1 9.5904 -1.1191 6.4624 49 1 2.4209 -0.1254 1.9891 50 1 1.3246 -1.4843 1.5877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567446230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:37 Heat of formation + Delta-G solvation = -80.555708 kcal Electronic energy + Delta-G solvation = -29603.007000 eV Core-core repulsion = 25438.437151 eV Total energy + Delta-G solvation = -4164.569849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57965 -39.41471 -38.57592 -37.50291 -35.33399 -34.06576 -33.88517 -33.18376 -31.30784 -30.94822 -29.00461 -26.73706 -26.38547 -24.41440 -23.92466 -22.58720 -22.27040 -21.06559 -20.49841 -20.30959 -18.90034 -17.90816 -17.73023 -16.84054 -16.61188 -16.33915 -15.76770 -15.47147 -15.37014 -15.00796 -14.64440 -14.52229 -14.21669 -14.08360 -13.95316 -13.78304 -13.54224 -13.22181 -12.99847 -12.63269 -12.57535 -12.47085 -12.07979 -11.90649 -11.68633 -11.53817 -11.41327 -11.30463 -11.19847 -11.14196 -11.10373 -10.98980 -10.65260 -10.41337 -10.33948 -10.26350 -10.23360 -9.60851 -9.51297 -9.07700 -8.45481 -7.98838 -7.83927 -6.43720 -3.84538 2.51830 2.73510 3.15729 3.24832 3.30681 3.61549 3.80872 3.88052 4.02366 4.09665 4.22854 4.37376 4.43540 4.56860 4.79986 4.80707 4.90208 4.95379 4.96538 5.03578 5.07094 5.17695 5.18316 5.22199 5.30043 5.32434 5.36658 5.38161 5.56088 5.62539 5.63745 5.68994 5.69342 5.73862 5.84046 5.94497 6.00883 6.11183 6.14967 6.20416 6.24274 6.33357 6.46688 7.13147 7.27122 7.40340 7.53211 8.03887 8.14612 8.59502 9.16198 9.52135 10.03886 10.74001 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.002591 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.247142 B =10805.535002 C =13408.236814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.062 3.938 7 H 0.094 0.906 8 C 0.512 3.488 9 O -0.520 6.520 10 N -0.725 5.725 11 C 0.127 3.873 12 C 0.052 3.948 13 N -0.478 5.478 14 C 0.042 3.958 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.019 3.981 27 C -0.225 4.225 28 C -0.171 4.171 29 C -0.146 4.146 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -8.466 -18.143 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.028 4.028 5 O -0.265 6.265 6 C 0.000 4.000 7 H 0.111 0.889 8 C 0.297 3.703 9 O -0.395 6.395 10 N -0.379 5.379 11 C 0.004 3.996 12 C -0.077 4.077 13 N -0.199 5.199 14 C -0.089 4.089 15 C 0.228 3.772 16 O -0.459 6.459 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.091 4.091 27 C -0.264 4.264 28 C -0.209 4.209 29 C -0.184 4.184 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.471 -6.957 -19.043 20.761 hybrid contribution -0.815 -0.910 1.471 1.912 sum -5.287 -7.867 -17.572 19.966 Atomic orbital electron populations 1.21726 0.93475 1.02262 1.02487 1.22745 0.96801 1.00649 0.94326 0.89244 1.23723 0.83909 0.97722 0.97493 1.89006 1.29129 1.86182 1.22195 1.22609 0.93370 0.99994 0.83993 0.88882 1.20380 0.88632 0.79386 0.81936 1.90729 1.41564 1.39905 1.67260 1.45827 1.20350 1.60977 1.10712 1.21320 0.85490 1.02160 0.90661 1.22230 0.94219 0.97868 0.93338 1.61212 1.02202 1.54280 1.02232 1.21991 1.01232 0.97513 0.88158 1.19743 0.85984 0.88335 0.83126 1.90517 1.53658 1.41554 1.60201 1.41860 1.46536 1.26586 1.05203 1.19681 1.26804 1.05307 0.90930 0.87936 1.25253 0.98199 0.98384 0.96114 1.69613 1.44932 1.34397 1.05416 0.85870 0.79444 0.80897 0.78163 1.20456 1.20928 1.19395 1.22806 0.90912 0.97972 0.97361 1.23621 1.06493 0.93767 1.02516 1.23073 0.95081 0.98876 1.03883 1.23056 0.96493 0.99634 0.99189 0.92247 0.91883 0.92110 0.91793 0.88561 0.76639 0.91741 0.90006 0.88319 0.94780 0.92790 0.88921 0.77555 0.91885 0.86167 0.88169 0.89028 0.88543 0.88247 0.89491 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.13 -0.97 3.72 -88.62 -0.33 -1.30 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.05 0.39 7.17 38.21 0.27 0.67 16 5 O -0.35 -4.26 10.74 -54.80 -0.59 -4.85 16 6 C 0.06 0.63 3.84 -27.30 -0.10 0.52 16 7 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 8 C 0.51 6.89 6.95 -10.99 -0.08 6.82 16 9 O -0.52 -9.47 16.53 -14.00 -0.23 -9.70 16 10 N -0.72 -8.41 5.54 -60.30 -0.33 -8.74 16 11 C 0.13 1.75 5.67 -4.04 -0.02 1.73 16 12 C 0.05 0.74 4.68 -3.83 -0.02 0.72 16 13 N -0.48 -7.62 4.31 -228.08 -0.98 -8.60 16 14 C 0.04 0.72 4.12 -4.98 -0.02 0.70 16 15 C 0.44 10.11 7.52 -10.99 -0.08 10.03 16 16 O -0.58 -15.05 14.62 5.55 0.08 -14.97 16 17 N -0.56 -13.95 5.29 -10.97 -0.06 -14.00 16 18 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 22 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.02 0.25 5.83 -67.71 -0.39 -0.15 16 27 C -0.22 -2.56 9.57 -26.73 -0.26 -2.82 16 28 C -0.17 -2.09 9.90 -26.73 -0.26 -2.36 16 29 C -0.15 -1.17 6.21 -25.20 -0.16 -1.33 16 30 H 0.06 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.40 8.05 -51.93 -0.42 -0.01 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.47 8.47 -40.82 -0.35 3.12 16 36 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.10 1.66 6.59 -51.93 -0.34 1.32 16 39 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 40 H 0.05 0.83 7.82 -51.92 -0.41 0.43 16 41 H 0.09 1.48 5.52 -51.93 -0.29 1.20 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.12 1.43 6.34 -51.93 -0.33 1.10 16 45 H 0.10 1.19 6.06 -51.93 -0.31 0.87 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.35 7.41 -51.93 -0.38 0.97 16 49 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 50 H 0.09 0.51 7.83 -51.93 -0.41 0.10 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -34.31 403.42 -9.71 -44.02 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -8.02 Total: 13.47 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.35 Total: 4.99 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.65 Total: -54.80 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.74 Total: -29.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.31 -9.71 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.534 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds