Wall clock time and date at job start Tue Mar 31 2020 23:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.83408 * 2 1 4 4 C 1.54995 * 110.90756 * 236.35389 * 2 1 3 5 5 O 1.44378 * 103.49093 * 204.78133 * 4 2 1 6 6 C 1.43746 * 106.97824 * 40.05812 * 5 4 2 7 7 H 1.09000 * 109.87910 * 92.91178 * 6 5 4 8 8 C 1.50701 * 109.88036 * 213.91722 * 6 5 4 9 9 O 1.21274 * 119.99723 * 3.53949 * 8 6 5 10 10 N 1.34776 * 119.99817 * 183.54942 * 8 6 5 11 11 C 1.46500 * 119.99923 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47247 * 179.97438 * 11 10 8 13 13 N 1.46901 * 109.47378 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00417 * 169.99995 * 13 12 11 15 15 C 1.50694 * 109.47110 * 283.96051 * 14 13 12 16 16 O 1.21287 * 120.00064 * 4.46564 * 15 14 13 17 17 N 1.34782 * 120.00178 * 184.47396 * 15 14 13 18 18 C 1.37093 * 120.00403 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99919 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00174 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47386 * 89.99658 * 22 20 18 24 24 H 1.48499 * 109.47319 * 209.99973 * 22 20 18 25 25 H 1.48504 * 109.46668 * 329.99981 * 22 20 18 26 26 C 1.46900 * 110.99840 * 293.95785 * 13 12 11 27 27 C 1.53008 * 117.49699 * 247.78582 * 26 13 12 28 28 C 1.53001 * 59.99892 * 252.50628 * 27 26 13 29 29 C 1.54109 * 107.29023 * 333.48834 * 6 5 4 30 30 H 1.08997 * 109.47437 * 182.19568 * 1 2 3 31 31 H 1.09005 * 109.46919 * 302.19971 * 1 2 3 32 32 H 1.09001 * 109.47123 * 62.18953 * 1 2 3 33 33 H 1.09004 * 110.61387 * 323.27627 * 4 2 1 34 34 H 1.08999 * 110.62434 * 86.11812 * 4 2 1 35 35 H 0.97001 * 120.00069 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.47120 * 299.99631 * 11 10 8 37 37 H 1.09002 * 109.47118 * 59.99477 * 11 10 8 38 38 H 1.09004 * 109.47220 * 300.00134 * 12 11 10 39 39 H 1.09002 * 109.47028 * 59.99986 * 12 11 10 40 40 H 1.09009 * 109.47012 * 43.95502 * 14 13 12 41 41 H 1.08999 * 109.47302 * 163.95685 * 14 13 12 42 42 H 0.97002 * 119.99452 * 359.97438 * 17 15 14 43 43 H 0.97003 * 119.99853 * 180.02562 * 21 20 18 44 44 H 1.09005 * 115.55389 * 33.48605 * 26 13 12 45 45 H 1.08993 * 117.49699 * 359.97438 * 27 26 13 46 46 H 1.09004 * 117.49928 * 145.01779 * 27 26 13 47 47 H 1.08998 * 117.49726 * 252.51378 * 28 27 26 48 48 H 1.08996 * 117.49737 * 107.48716 * 28 27 26 49 49 H 1.08996 * 110.48416 * 243.34925 * 29 6 5 50 50 H 1.08996 * 110.48358 * 120.70935 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8022 -1.2053 5 8 3.3940 -1.2144 -0.7626 6 6 3.2718 -1.5883 0.6200 7 1 3.0825 -2.6588 0.6992 8 6 4.5363 -1.2356 1.3600 9 8 5.4336 -0.6565 0.7854 10 7 4.6700 -1.5639 2.6603 11 6 5.8995 -1.2216 3.3796 12 6 5.7936 -1.7022 4.8282 13 7 7.0262 -1.3583 5.5496 14 6 6.8732 -1.5876 6.9925 15 6 6.0463 -0.4796 7.5923 16 8 5.5581 0.3686 6.8759 17 7 5.8495 -0.4312 8.9247 18 6 5.0977 0.5770 9.4705 19 1 4.6635 1.3328 8.8327 20 6 4.8943 0.6266 10.8440 21 7 5.4231 -0.2927 11.6202 22 14 3.8694 2.0000 11.5876 23 1 2.4457 1.5812 11.6422 24 1 4.3530 2.2905 12.9612 25 1 3.9947 3.2200 10.7502 26 6 8.1737 -2.1048 5.0167 27 6 8.8113 -3.1610 5.9217 28 6 9.5418 -1.8444 5.6503 29 6 2.0824 -0.8013 1.2039 30 1 -0.3634 -1.0269 0.0394 31 1 -0.3633 0.5476 0.8697 32 1 -0.3633 0.4795 -0.9090 33 1 1.4561 -1.6704 -1.4087 34 1 2.1556 -0.1673 -2.0884 35 1 3.9521 -2.0269 3.1200 36 1 6.7492 -1.7049 2.8973 37 1 6.0400 -0.1407 3.3650 38 1 4.9440 -1.2185 5.3103 39 1 5.6529 -2.7830 4.8431 40 1 6.3750 -2.5430 7.1578 41 1 7.8558 -1.6038 7.4641 42 1 6.2398 -1.1098 9.4976 43 1 5.2808 -0.2583 12.5791 44 1 8.1454 -2.3095 3.9464 45 1 8.3795 -3.3016 6.9126 46 1 9.2024 -4.0609 5.4469 47 1 10.4135 -1.8780 4.9968 48 1 9.5904 -1.1191 6.4624 49 1 2.4209 -0.1254 1.9891 50 1 1.3246 -1.4843 1.5877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567446230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:37 Heat of formation + Delta-G solvation = -106.171948 kcal Electronic energy + Delta-G solvation = -29604.117803 eV Core-core repulsion = 25438.437151 eV Total energy + Delta-G solvation = -4165.680652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49315 -40.74655 -39.61379 -39.05882 -36.46521 -35.94071 -34.63468 -34.34669 -33.26652 -31.90504 -30.18974 -27.91066 -27.21682 -26.12317 -24.83636 -23.64526 -23.21780 -21.79293 -21.74179 -21.40093 -20.46449 -19.73436 -18.74250 -18.23673 -17.63050 -17.18324 -16.90830 -16.67347 -16.55683 -16.32349 -15.92108 -15.82124 -15.63727 -15.45965 -14.92367 -14.88964 -14.56691 -14.35066 -14.22113 -13.75942 -13.64204 -13.48402 -13.30455 -13.10740 -12.98088 -12.76027 -12.53569 -12.41941 -12.35263 -12.31569 -12.24134 -12.12418 -11.80351 -11.73459 -11.71520 -11.47039 -11.23425 -11.14600 -10.56802 -10.27583 -10.18650 -9.98932 -9.06083 -8.45405 -5.93666 1.37868 1.41991 1.47644 1.54258 1.76087 2.06714 2.28404 2.62996 2.98397 2.99699 3.21273 3.37583 3.47008 3.65918 3.70803 3.78470 3.85683 3.94645 4.02683 4.09126 4.16838 4.20653 4.26845 4.30058 4.35727 4.47110 4.51265 4.51628 4.64294 4.74627 4.78585 4.80582 4.84373 4.87546 4.92513 4.97317 5.07229 5.09644 5.20819 5.27166 5.28892 5.34571 5.42103 5.74667 5.84253 6.05983 6.16029 6.45266 6.62025 7.13605 7.14659 7.58058 8.14058 8.71904 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.002591 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.247142 B =10805.535002 C =13408.236814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 H 0.068 0.932 4 C 0.045 3.955 5 O -0.385 6.385 6 C 0.065 3.935 7 H 0.128 0.872 8 C 0.507 3.493 9 O -0.576 6.576 10 N -0.710 5.710 11 C 0.139 3.861 12 C 0.061 3.939 13 N -0.504 5.504 14 C 0.058 3.942 15 C 0.441 3.559 16 O -0.613 6.613 17 N -0.575 5.575 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.990 3.010 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.275 1.275 26 C 0.007 3.993 27 C -0.205 4.205 28 C -0.178 4.178 29 C -0.142 4.142 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.417 0.583 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.133 0.867 45 H 0.097 0.903 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 -10.597 -18.257 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 H 0.087 0.913 4 C -0.031 4.031 5 O -0.303 6.303 6 C 0.004 3.996 7 H 0.145 0.855 8 C 0.294 3.706 9 O -0.455 6.455 10 N -0.365 5.365 11 C 0.014 3.986 12 C -0.067 4.067 13 N -0.227 5.227 14 C -0.072 4.072 15 C 0.229 3.771 16 O -0.499 6.499 17 N -0.212 5.212 18 C -0.459 4.459 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.814 3.186 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.102 4.102 27 C -0.244 4.244 28 C -0.215 4.215 29 C -0.180 4.180 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.150 0.850 45 H 0.116 0.884 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.482 -9.132 -19.133 21.898 hybrid contribution -0.468 -0.230 1.451 1.541 sum -5.950 -9.362 -17.682 20.874 Atomic orbital electron populations 1.21697 0.91519 1.03344 1.02807 1.22733 0.98318 0.99449 0.94084 0.91305 1.23943 0.82718 0.98840 0.97602 1.88968 1.31625 1.86595 1.23132 1.22771 0.91754 1.02008 0.83058 0.85483 1.21162 0.89239 0.78146 0.82098 1.90697 1.43768 1.42549 1.68504 1.45694 1.20147 1.60305 1.10306 1.21050 0.86746 0.99841 0.90916 1.22084 0.92725 0.99193 0.92648 1.61089 1.03713 1.56271 1.01597 1.21797 1.00749 0.95738 0.88948 1.20780 0.85129 0.88903 0.82329 1.90493 1.55022 1.43443 1.60946 1.41919 1.46850 1.26410 1.06057 1.19615 1.28558 1.06217 0.91490 0.90422 1.25992 0.98867 1.00434 0.95938 1.69671 1.45330 1.35342 1.05822 0.84968 0.78311 0.77851 0.77464 1.19459 1.19702 1.20006 1.22870 0.89966 0.99157 0.98192 1.23655 1.04844 0.93990 1.01879 1.23138 0.95446 0.99271 1.03679 1.23104 0.96378 0.99786 0.98739 0.90672 0.92129 0.91350 0.89244 0.88193 0.74657 0.91102 0.93793 0.91257 0.91740 0.90364 0.87586 0.77082 0.91362 0.84951 0.88441 0.86649 0.86686 0.90083 0.91300 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.13 -1.82 3.72 -9.50 -0.04 -1.86 16 3 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.04 0.67 7.17 72.66 0.52 1.19 16 5 O -0.38 -9.27 10.74 -130.27 -1.40 -10.66 16 6 C 0.07 1.25 3.84 30.22 0.12 1.36 16 7 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.51 13.77 6.95 87.66 0.61 14.38 16 9 O -0.58 -21.91 16.53 15.70 0.26 -21.65 16 10 N -0.71 -16.30 5.54 -463.07 -2.57 -18.86 16 11 C 0.14 3.89 5.67 86.38 0.49 4.38 16 12 C 0.06 1.73 4.68 86.30 0.40 2.13 16 13 N -0.50 -15.82 4.31 -875.51 -3.78 -19.60 16 14 C 0.06 1.96 4.12 85.56 0.35 2.31 16 15 C 0.44 20.54 7.52 87.65 0.66 21.20 16 16 O -0.61 -33.29 14.62 -3.05 -0.04 -33.33 16 17 N -0.57 -28.94 5.29 -306.99 -1.62 -30.56 16 18 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 21 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 22 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.01 0.17 5.83 44.92 0.26 0.43 16 27 C -0.20 -4.07 9.57 30.60 0.29 -3.77 16 28 C -0.18 -4.04 9.90 30.60 0.30 -3.73 16 29 C -0.14 -2.09 6.21 31.59 0.20 -1.90 16 30 H 0.07 0.47 8.10 -2.39 -0.02 0.45 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.87 8.05 -2.38 -0.02 0.86 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.42 6.70 8.47 -92.71 -0.79 5.91 16 36 H 0.07 1.91 6.40 -2.39 -0.02 1.89 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.38 6.59 -2.39 -0.02 2.36 16 39 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.08 2.26 7.82 -2.38 -0.02 2.24 16 41 H 0.11 3.28 5.52 -2.39 -0.01 3.27 16 42 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.13 2.88 6.34 -2.38 -0.02 2.87 16 45 H 0.10 2.02 6.06 -2.39 -0.01 2.00 16 46 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.08 2.15 7.41 -2.39 -0.02 2.14 16 49 H 0.07 1.27 7.70 -2.39 -0.02 1.25 16 50 H 0.12 1.00 7.83 -2.39 -0.02 0.98 16 Total: -1.00 -77.86 403.42 -1.27 -79.14 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.55 Total: 42.00 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.11 Total: 17.71 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -7.68 Total: -117.80 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -1.18 Total: -65.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -77.86 -1.27 -79.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds