Wall clock time and date at job start Tue Mar 31 2020 23:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.45644 * 2 1 4 4 C 1.54479 * 110.51344 * 122.75759 * 2 1 3 5 5 O 1.44513 * 104.87995 * 142.54511 * 4 2 1 6 6 C 1.44420 * 105.22938 * 319.64490 * 5 4 2 7 7 H 1.09003 * 110.37047 * 281.47687 * 6 5 4 8 8 C 1.50702 * 110.37193 * 159.24666 * 6 5 4 9 9 O 1.21271 * 120.00412 * 357.95427 * 8 6 5 10 10 N 1.34780 * 119.99588 * 177.94860 * 8 6 5 11 11 C 1.46500 * 119.99735 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46902 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47018 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00174 * 190.00235 * 13 12 11 15 15 C 1.50699 * 109.47145 * 75.95981 * 14 13 12 16 16 O 1.21287 * 120.00044 * 5.48087 * 15 14 13 17 17 N 1.34778 * 119.99614 * 185.48300 * 15 14 13 18 18 C 1.37099 * 119.99626 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00172 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99703 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46829 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47256 * 119.99561 * 22 20 18 25 25 H 1.48497 * 109.46980 * 239.99706 * 22 20 18 26 26 C 1.46896 * 111.00034 * 66.04418 * 13 12 11 27 27 C 1.52995 * 117.50164 * 259.69143 * 26 13 12 28 28 C 1.53009 * 117.50063 * 191.03051 * 26 13 12 29 29 C 1.54478 * 104.89909 * 40.36142 * 6 5 4 30 30 H 1.09000 * 109.47081 * 182.60104 * 1 2 3 31 31 H 1.09001 * 109.46790 * 302.60213 * 1 2 3 32 32 H 1.08998 * 109.47226 * 62.60134 * 1 2 3 33 33 H 1.09002 * 110.36901 * 261.45672 * 4 2 1 34 34 H 1.09005 * 110.36879 * 23.67518 * 4 2 1 35 35 H 0.96996 * 120.00137 * 0.02562 * 10 8 6 36 36 H 1.08997 * 109.47048 * 60.00657 * 11 10 8 37 37 H 1.08994 * 109.47277 * 300.00159 * 11 10 8 38 38 H 1.09002 * 109.47462 * 60.00411 * 12 11 10 39 39 H 1.08995 * 109.47530 * 299.99999 * 12 11 10 40 40 H 1.09000 * 109.47318 * 195.96517 * 14 13 12 41 41 H 1.09003 * 109.46557 * 315.95699 * 14 13 12 42 42 H 0.97000 * 119.99925 * 0.02562 * 17 15 14 43 43 H 0.97002 * 119.99517 * 179.97438 * 21 20 18 44 44 H 1.09005 * 115.55205 * 45.36566 * 26 13 12 45 45 H 1.09008 * 117.50104 * 0.02562 * 27 26 13 46 46 H 1.08999 * 117.50191 * 145.02497 * 27 26 13 47 47 H 1.09000 * 117.50174 * 214.98381 * 28 26 13 48 48 H 1.09004 * 117.49633 * 359.97438 * 28 26 13 49 49 H 1.08997 * 110.51340 * 94.72297 * 29 6 5 50 50 H 1.09002 * 110.50738 * 217.43452 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7829 1.2167 5 8 3.2398 -1.4750 0.7227 6 6 2.8757 -1.9414 -0.5947 7 1 2.2569 -2.8359 -0.5229 8 6 4.1106 -2.2231 -1.4114 9 8 5.2089 -2.0123 -0.9424 10 7 3.9943 -2.7093 -2.6630 11 6 5.1946 -2.9826 -3.4571 12 6 4.7864 -3.5227 -4.8292 13 7 5.9900 -3.7973 -5.6252 14 6 5.6419 -4.0900 -7.0221 15 6 5.2920 -2.8075 -7.7319 16 8 5.4243 -1.7443 -7.1636 17 7 4.8321 -2.8422 -8.9983 18 6 4.5133 -1.6754 -9.6439 19 1 4.6311 -0.7287 -9.1379 20 6 4.0387 -1.7112 -10.9494 21 7 3.8959 -2.8632 -11.5653 22 14 3.6049 -0.1215 -11.8293 23 1 3.8540 1.0291 -10.9241 24 1 4.4441 0.0152 -13.0468 25 1 2.1715 -0.1452 -12.2162 26 6 6.7717 -4.8930 -5.0368 27 6 7.9964 -4.5171 -4.2003 28 6 8.1780 -5.1338 -5.5896 29 6 2.0714 -0.7797 -1.2191 30 1 -0.3633 -1.0266 0.0466 31 1 -0.3633 0.5537 0.8658 32 1 -0.3633 0.4729 -0.9124 33 1 2.3465 -0.0965 2.0176 34 1 1.3278 -1.4977 1.5693 35 1 3.1158 -2.8776 -3.0382 36 1 5.8095 -3.7217 -2.9436 37 1 5.7636 -2.0617 -3.5842 38 1 4.1717 -2.7833 -5.3426 39 1 4.2171 -4.4435 -4.7025 40 1 6.4917 -4.5594 -7.5177 41 1 4.7869 -4.7655 -7.0495 42 1 4.7260 -3.6926 -9.4527 43 1 3.5641 -2.8881 -12.4765 44 1 6.1975 -5.7654 -4.7247 45 1 8.2219 -3.4568 -4.0862 46 1 8.2282 -5.1424 -3.3381 47 1 8.5291 -6.1644 -5.6407 48 1 8.5229 -4.4794 -6.3902 49 1 2.7219 -0.1447 -1.8205 50 1 1.2491 -1.1652 -1.8218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567446231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:41 Heat of formation + Delta-G solvation = -85.903673 kcal Electronic energy + Delta-G solvation = -29607.937482 eV Core-core repulsion = 25443.135728 eV Total energy + Delta-G solvation = -4164.801754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53665 -39.14284 -38.54088 -37.44614 -35.23999 -34.10386 -33.87735 -33.38665 -31.28379 -30.93803 -28.97963 -26.68109 -26.32337 -24.42012 -23.89820 -22.46887 -22.21850 -20.95294 -20.56723 -20.21333 -19.08925 -17.85844 -17.82085 -16.64814 -16.33436 -16.16927 -15.90279 -15.44583 -15.34278 -15.15429 -14.63114 -14.44275 -14.30383 -14.19718 -13.94233 -13.63460 -13.49233 -13.37032 -13.12453 -12.68708 -12.66925 -12.40321 -12.04355 -11.77360 -11.60835 -11.52227 -11.38272 -11.30872 -11.24090 -11.22037 -11.04799 -10.95780 -10.35912 -10.33591 -10.27283 -10.23764 -10.09156 -9.70974 -9.51230 -9.06652 -8.50602 -7.98926 -7.94587 -6.42829 -3.83478 2.52029 2.72939 3.14913 3.25653 3.32654 3.67883 3.81526 3.91304 3.94572 4.12095 4.21386 4.34892 4.47540 4.59774 4.76211 4.87312 4.95489 4.98282 5.02170 5.05023 5.13764 5.16611 5.17128 5.22932 5.26578 5.36342 5.41321 5.44325 5.61203 5.64979 5.66061 5.66616 5.74845 5.80254 5.81828 5.89733 6.08189 6.12719 6.18288 6.26995 6.31377 6.32575 6.43034 7.13454 7.32771 7.40763 7.54317 8.05746 8.14726 8.61358 9.17765 9.54130 10.06233 10.75055 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009113 B = 0.002637 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.744725 B =10614.989353 C =13233.475286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.045 3.955 5 O -0.344 6.344 6 C 0.059 3.941 7 H 0.093 0.907 8 C 0.518 3.482 9 O -0.519 6.519 10 N -0.724 5.724 11 C 0.128 3.872 12 C 0.055 3.945 13 N -0.483 5.483 14 C 0.050 3.950 15 C 0.443 3.557 16 O -0.574 6.574 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.000 4.000 27 C -0.162 4.162 28 C -0.170 4.170 29 C -0.143 4.143 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 -4.132 19.455 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.032 4.032 5 O -0.262 6.262 6 C -0.003 4.003 7 H 0.111 0.889 8 C 0.302 3.698 9 O -0.394 6.394 10 N -0.378 5.378 11 C 0.005 3.995 12 C -0.073 4.073 13 N -0.207 5.207 14 C -0.081 4.081 15 C 0.228 3.772 16 O -0.457 6.457 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.109 4.109 27 C -0.200 4.200 28 C -0.207 4.207 29 C -0.181 4.181 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.051 0.949 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.120 0.880 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.354 -2.892 20.104 20.772 hybrid contribution -1.488 -0.625 -1.247 2.039 sum -5.842 -3.517 18.857 20.052 Atomic orbital electron populations 1.21831 0.93680 1.02213 1.02449 1.22538 0.96760 1.00770 0.94418 0.89432 1.23617 0.87867 0.95053 0.96621 1.89297 1.35027 1.73649 1.28240 1.22838 0.93840 0.98563 0.85012 0.88913 1.20116 0.90427 0.77479 0.81786 1.90734 1.27653 1.50428 1.70561 1.45826 1.10550 1.66745 1.14675 1.21295 0.86346 1.01946 0.89907 1.22184 0.91957 0.99837 0.93324 1.61127 1.20456 1.38425 1.00698 1.21849 1.00846 0.96863 0.88567 1.19789 0.84157 0.90085 0.83199 1.90531 1.57523 1.31144 1.66521 1.41886 1.57350 1.09739 1.11447 1.19730 1.39793 0.87386 0.95697 0.87918 1.25249 0.97543 0.98407 0.96801 1.69621 1.46668 1.24566 1.13570 0.85823 0.77937 0.81562 0.79169 1.19230 1.20757 1.20812 1.22456 0.89530 0.94481 1.04441 1.23076 1.00643 1.02345 0.93901 1.23042 0.97920 1.01663 0.98123 1.23035 1.00099 0.96552 0.98439 0.92279 0.92191 0.91894 0.88670 0.91850 0.76703 0.91294 0.90205 0.88912 0.94948 0.89004 0.93248 0.77559 0.91967 0.89845 0.87934 0.89033 0.88865 0.88020 0.89751 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.97 37.16 0.33 -0.44 16 2 C -0.13 -0.91 3.72 -89.05 -0.33 -1.24 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.05 0.36 7.18 37.93 0.27 0.64 16 5 O -0.34 -4.28 10.92 -54.44 -0.59 -4.87 16 6 C 0.06 0.61 3.70 -27.11 -0.10 0.51 16 7 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 8 C 0.52 7.03 7.07 -10.98 -0.08 6.96 16 9 O -0.52 -9.50 16.55 -13.64 -0.23 -9.73 16 10 N -0.72 -8.52 5.55 -60.30 -0.33 -8.86 16 11 C 0.13 1.80 5.54 -4.04 -0.02 1.77 16 12 C 0.06 0.80 4.72 -3.82 -0.02 0.78 16 13 N -0.48 -7.68 4.15 -228.08 -0.95 -8.62 16 14 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 15 C 0.44 10.12 7.34 -10.99 -0.08 10.04 16 16 O -0.57 -15.15 15.10 5.55 0.08 -15.06 16 17 N -0.57 -14.01 5.29 -10.96 -0.06 -14.06 16 18 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.00 0.00 4.22 -67.71 -0.29 -0.29 16 27 C -0.16 -1.97 9.51 -26.70 -0.25 -2.22 16 28 C -0.17 -2.03 9.66 -26.69 -0.26 -2.29 16 29 C -0.14 -1.19 6.27 -25.16 -0.16 -1.35 16 30 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.40 7.82 -51.93 -0.41 0.00 16 35 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 36 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 39 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.09 1.46 7.20 -51.93 -0.37 1.09 16 41 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 42 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 49 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 50 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -34.43 409.75 -9.83 -44.25 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -8.38 Total: 12.60 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.25 Total: 5.91 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.62 Total: -55.05 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.74 Total: -29.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.43 -9.83 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.650 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds