Wall clock time and date at job start Tue Mar 31 2020 23:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.45644 * 2 1 4 4 C 1.54479 * 110.51344 * 122.75759 * 2 1 3 5 5 O 1.44513 * 104.87995 * 142.54511 * 4 2 1 6 6 C 1.44420 * 105.22938 * 319.64490 * 5 4 2 7 7 H 1.09003 * 110.37047 * 281.47687 * 6 5 4 8 8 C 1.50702 * 110.37193 * 159.24666 * 6 5 4 9 9 O 1.21271 * 120.00412 * 357.95427 * 8 6 5 10 10 N 1.34780 * 119.99588 * 177.94860 * 8 6 5 11 11 C 1.46500 * 119.99735 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46902 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47018 * 180.02562 * 12 11 10 14 14 C 1.46904 * 111.00174 * 190.00235 * 13 12 11 15 15 C 1.50699 * 109.47145 * 75.95981 * 14 13 12 16 16 O 1.21287 * 120.00044 * 5.48087 * 15 14 13 17 17 N 1.34778 * 119.99614 * 185.48300 * 15 14 13 18 18 C 1.37099 * 119.99626 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00172 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99703 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00006 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46829 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47256 * 119.99561 * 22 20 18 25 25 H 1.48497 * 109.46980 * 239.99706 * 22 20 18 26 26 C 1.46896 * 111.00034 * 66.04418 * 13 12 11 27 27 C 1.52995 * 117.50164 * 259.69143 * 26 13 12 28 28 C 1.53009 * 117.50063 * 191.03051 * 26 13 12 29 29 C 1.54478 * 104.89909 * 40.36142 * 6 5 4 30 30 H 1.09000 * 109.47081 * 182.60104 * 1 2 3 31 31 H 1.09001 * 109.46790 * 302.60213 * 1 2 3 32 32 H 1.08998 * 109.47226 * 62.60134 * 1 2 3 33 33 H 1.09002 * 110.36901 * 261.45672 * 4 2 1 34 34 H 1.09005 * 110.36879 * 23.67518 * 4 2 1 35 35 H 0.96996 * 120.00137 * 0.02562 * 10 8 6 36 36 H 1.08997 * 109.47048 * 60.00657 * 11 10 8 37 37 H 1.08994 * 109.47277 * 300.00159 * 11 10 8 38 38 H 1.09002 * 109.47462 * 60.00411 * 12 11 10 39 39 H 1.08995 * 109.47530 * 299.99999 * 12 11 10 40 40 H 1.09000 * 109.47318 * 195.96517 * 14 13 12 41 41 H 1.09003 * 109.46557 * 315.95699 * 14 13 12 42 42 H 0.97000 * 119.99925 * 0.02562 * 17 15 14 43 43 H 0.97002 * 119.99517 * 179.97438 * 21 20 18 44 44 H 1.09005 * 115.55205 * 45.36566 * 26 13 12 45 45 H 1.09008 * 117.50104 * 0.02562 * 27 26 13 46 46 H 1.08999 * 117.50191 * 145.02497 * 27 26 13 47 47 H 1.09000 * 117.50174 * 214.98381 * 28 26 13 48 48 H 1.09004 * 117.49633 * 359.97438 * 28 26 13 49 49 H 1.08997 * 110.51340 * 94.72297 * 29 6 5 50 50 H 1.09002 * 110.50738 * 217.43452 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7829 1.2167 5 8 3.2398 -1.4750 0.7227 6 6 2.8757 -1.9414 -0.5947 7 1 2.2569 -2.8359 -0.5229 8 6 4.1106 -2.2231 -1.4114 9 8 5.2089 -2.0123 -0.9424 10 7 3.9943 -2.7093 -2.6630 11 6 5.1946 -2.9826 -3.4571 12 6 4.7864 -3.5227 -4.8292 13 7 5.9900 -3.7973 -5.6252 14 6 5.6419 -4.0900 -7.0221 15 6 5.2920 -2.8075 -7.7319 16 8 5.4243 -1.7443 -7.1636 17 7 4.8321 -2.8422 -8.9983 18 6 4.5133 -1.6754 -9.6439 19 1 4.6311 -0.7287 -9.1379 20 6 4.0387 -1.7112 -10.9494 21 7 3.8959 -2.8632 -11.5653 22 14 3.6049 -0.1215 -11.8293 23 1 3.8540 1.0291 -10.9241 24 1 4.4441 0.0152 -13.0468 25 1 2.1715 -0.1452 -12.2162 26 6 6.7717 -4.8930 -5.0368 27 6 7.9964 -4.5171 -4.2003 28 6 8.1780 -5.1338 -5.5896 29 6 2.0714 -0.7797 -1.2191 30 1 -0.3633 -1.0266 0.0466 31 1 -0.3633 0.5537 0.8658 32 1 -0.3633 0.4729 -0.9124 33 1 2.3465 -0.0965 2.0176 34 1 1.3278 -1.4977 1.5693 35 1 3.1158 -2.8776 -3.0382 36 1 5.8095 -3.7217 -2.9436 37 1 5.7636 -2.0617 -3.5842 38 1 4.1717 -2.7833 -5.3426 39 1 4.2171 -4.4435 -4.7025 40 1 6.4917 -4.5594 -7.5177 41 1 4.7869 -4.7655 -7.0495 42 1 4.7260 -3.6926 -9.4527 43 1 3.5641 -2.8881 -12.4765 44 1 6.1975 -5.7654 -4.7247 45 1 8.2219 -3.4568 -4.0862 46 1 8.2282 -5.1424 -3.3381 47 1 8.5291 -6.1644 -5.6407 48 1 8.5229 -4.4794 -6.3902 49 1 2.7219 -0.1447 -1.8205 50 1 1.2491 -1.1652 -1.8218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567446231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:40 Heat of formation + Delta-G solvation = -111.500720 kcal Electronic energy + Delta-G solvation = -29609.047454 eV Core-core repulsion = 25443.135728 eV Total energy + Delta-G solvation = -4165.911725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45416 -40.50911 -39.65673 -38.90380 -36.37409 -35.93743 -34.77735 -34.48770 -33.24149 -31.91440 -30.12555 -27.90446 -27.15926 -25.98447 -24.94714 -23.54921 -23.19660 -21.79947 -21.52524 -21.31315 -20.74772 -19.82149 -18.75680 -17.83827 -17.58353 -17.16450 -17.02469 -16.63117 -16.44941 -16.26513 -16.07504 -15.86411 -15.64030 -15.41084 -15.09498 -14.78908 -14.57077 -14.34914 -14.14704 -13.91158 -13.88149 -13.51361 -13.21403 -13.04985 -12.94683 -12.74652 -12.52151 -12.42129 -12.38048 -12.27156 -12.20741 -12.11931 -11.79458 -11.65240 -11.47583 -11.36095 -11.13108 -11.05624 -10.71352 -10.28829 -10.19365 -9.97843 -9.25027 -8.44941 -5.92917 1.36723 1.42177 1.46103 1.55720 1.74846 2.08930 2.28693 2.64294 2.89663 3.05901 3.22428 3.36889 3.46054 3.64616 3.80281 3.82493 3.91075 3.98524 4.07889 4.11654 4.14560 4.23476 4.28694 4.34438 4.43935 4.50367 4.51632 4.56960 4.63895 4.75021 4.77245 4.81867 4.83985 4.85518 4.93466 4.96447 5.09141 5.12843 5.21435 5.27226 5.35315 5.35609 5.42972 5.69274 5.83961 6.06611 6.22439 6.44009 6.63654 7.12406 7.16086 7.60112 8.16580 8.72680 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009113 B = 0.002637 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.744725 B =10614.989353 C =13233.475286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.041 3.959 5 O -0.384 6.384 6 C 0.063 3.937 7 H 0.128 0.872 8 C 0.513 3.487 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.142 3.858 12 C 0.064 3.936 13 N -0.510 5.510 14 C 0.065 3.935 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.328 4.328 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.989 3.011 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.270 1.270 26 C -0.005 4.005 27 C -0.162 4.162 28 C -0.162 4.162 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -5.904 19.771 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 H 0.097 0.903 4 C -0.035 4.035 5 O -0.303 6.303 6 C 0.002 3.998 7 H 0.146 0.854 8 C 0.299 3.701 9 O -0.454 6.454 10 N -0.364 5.364 11 C 0.017 3.983 12 C -0.064 4.064 13 N -0.235 5.235 14 C -0.066 4.066 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.214 5.214 18 C -0.457 4.457 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.813 3.187 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.195 1.195 26 C -0.113 4.113 27 C -0.200 4.200 28 C -0.199 4.199 29 C -0.179 4.179 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.140 0.860 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.179 -4.698 20.401 21.828 hybrid contribution -0.884 -0.049 -1.295 1.569 sum -7.063 -4.747 19.106 20.916 Atomic orbital electron populations 1.21805 0.91748 1.03170 1.02929 1.22525 0.98233 0.99975 0.93467 0.90309 1.23846 0.87177 0.95571 0.96917 1.89261 1.37471 1.74410 1.29114 1.22982 0.92226 1.00537 0.84067 0.85425 1.20871 0.90960 0.76223 0.82039 1.90702 1.29996 1.52865 1.71818 1.45690 1.10793 1.65844 1.14073 1.21002 0.86920 1.00072 0.90283 1.22061 0.91538 1.00345 0.92488 1.60979 1.21473 1.40644 1.00374 1.21659 1.02399 0.93585 0.88933 1.20838 0.82061 0.91715 0.82486 1.90507 1.58693 1.33534 1.67301 1.41939 1.58072 1.09166 1.12209 1.19636 1.41888 0.87524 0.96689 0.90569 1.25975 0.96854 1.01529 0.96859 1.69674 1.46590 1.25912 1.14022 0.84924 0.78269 0.77604 0.77870 1.19985 1.19818 1.19481 1.22584 0.89644 0.94260 1.04805 1.23068 1.00470 1.01399 0.95079 1.23091 0.97008 1.02757 0.97073 1.23073 1.00200 0.95761 0.98896 0.91095 0.91300 0.91840 0.88178 0.89588 0.74687 0.90916 0.94108 0.91834 0.91692 0.87421 0.90624 0.77037 0.91381 0.87299 0.90486 0.86782 0.85977 0.89965 0.92133 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.97 71.98 0.65 -0.49 16 2 C -0.12 -1.62 3.72 -9.78 -0.04 -1.66 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.04 0.60 7.18 72.48 0.52 1.12 16 5 O -0.38 -9.41 10.92 -130.61 -1.43 -10.84 16 6 C 0.06 1.23 3.70 30.35 0.11 1.34 16 7 H 0.13 1.59 8.14 -2.39 -0.02 1.58 16 8 C 0.51 14.10 7.07 87.66 0.62 14.72 16 9 O -0.58 -22.03 16.55 15.36 0.25 -21.78 16 10 N -0.71 -16.54 5.55 -463.07 -2.57 -19.11 16 11 C 0.14 4.03 5.54 86.38 0.48 4.51 16 12 C 0.06 1.80 4.72 86.30 0.41 2.21 16 13 N -0.51 -15.88 4.15 -875.51 -3.64 -19.51 16 14 C 0.06 2.16 5.45 85.56 0.47 2.62 16 15 C 0.44 20.54 7.34 87.66 0.64 21.19 16 16 O -0.61 -33.73 15.10 -3.05 -0.05 -33.78 16 17 N -0.58 -28.93 5.29 -306.99 -1.62 -30.55 16 18 C -0.33 -18.37 9.68 84.04 0.81 -17.56 16 19 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 22 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 C 0.00 -0.12 4.22 44.92 0.19 0.07 16 27 C -0.16 -3.77 9.51 30.62 0.29 -3.48 16 28 C -0.16 -3.55 9.66 30.62 0.30 -3.25 16 29 C -0.14 -2.20 6.27 31.61 0.20 -2.00 16 30 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 0.86 7.82 -2.38 -0.02 0.85 16 35 H 0.42 6.79 8.47 -92.71 -0.79 6.00 16 36 H 0.07 2.03 6.73 -2.39 -0.02 2.01 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 2.18 6.91 -2.39 -0.02 2.16 16 39 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.11 3.25 7.20 -2.39 -0.02 3.24 16 41 H 0.08 2.14 8.00 -2.39 -0.02 2.12 16 42 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 43 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 49 H 0.06 1.23 7.86 -2.39 -0.02 1.21 16 50 H 0.12 1.15 7.73 -2.39 -0.02 1.13 16 Total: -1.00 -78.53 409.75 -1.19 -79.73 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.56 Total: 40.77 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 6.11 Total: 19.14 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -7.55 Total: -117.88 kcal Atomic # 8 Polarization: -65.18 SS G_CDS: -1.22 Total: -66.40 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -78.53 -1.19 -79.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567446231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.775 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds