Wall clock time and date at job start Tue Mar 31 2020 23:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99862 * 2 1 4 4 O 1.42891 * 109.46766 * 135.00114 * 3 2 1 5 5 C 1.42909 * 113.99832 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46920 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00376 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99506 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63305 * 0.02562 * 8 6 5 10 10 C 1.53190 * 108.77627 * 126.37092 * 9 8 6 11 11 C 1.53032 * 109.31358 * 54.63502 * 10 9 8 12 12 H 1.09000 * 109.45382 * 58.64592 * 11 10 9 13 13 N 1.46903 * 109.45947 * 178.61330 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.06836 * 13 11 10 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99915 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00007 * 22 20 18 26 26 C 1.53045 * 109.53899 * 298.63245 * 11 10 9 27 27 C 1.46930 * 120.62580 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.58726 * 353.41653 * 27 8 6 29 29 C 1.52996 * 109.70186 * 113.77505 * 27 8 6 30 30 H 1.08003 * 120.00296 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00187 * 0.02562 * 1 2 3 32 32 H 1.07993 * 120.00077 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46422 * 15.00037 * 3 2 1 34 34 H 1.09000 * 109.47102 * 255.00200 * 3 2 1 35 35 H 1.08998 * 109.46619 * 59.99998 * 5 4 3 36 36 H 1.09003 * 109.47039 * 300.00409 * 5 4 3 37 37 H 1.09003 * 109.58488 * 246.16110 * 9 8 6 38 38 H 1.08998 * 109.58731 * 6.43612 * 9 8 6 39 39 H 1.08995 * 109.49470 * 294.67618 * 10 9 8 40 40 H 1.09000 * 109.49276 * 174.58674 * 10 9 8 41 41 H 1.00902 * 110.99560 * 151.11274 * 13 11 10 42 42 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 43 43 H 1.09006 * 109.47133 * 299.99542 * 14 13 11 44 44 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 46 46 H 1.08992 * 109.49945 * 181.31689 * 26 11 10 47 47 H 1.09000 * 109.49716 * 301.41644 * 26 11 10 48 48 H 1.09001 * 109.47216 * 179.35655 * 29 27 8 49 49 H 1.09007 * 109.47297 * 299.35574 * 29 27 8 50 50 H 1.08995 * 109.47680 * 59.35591 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 4.9940 2.2568 2.0619 7 8 5.0902 1.2099 2.6667 8 7 5.8586 3.2605 2.3101 9 6 5.7543 4.5346 1.5860 10 6 5.6818 5.6763 2.6048 11 6 6.8814 5.5874 3.5509 12 1 7.8041 5.6452 2.9736 13 7 6.8328 6.7002 4.5086 14 6 7.4467 7.9089 3.9428 15 6 7.3789 9.0262 4.9519 16 8 6.8690 8.8346 6.0356 17 7 7.8841 10.2386 4.6497 18 6 7.8220 11.2552 5.5675 19 1 7.3680 11.0846 6.5324 20 6 8.3432 12.5050 5.2562 21 7 8.8961 12.7125 4.0822 22 14 8.2580 13.8904 6.5064 23 1 8.8793 15.1119 5.9348 24 1 6.8382 14.1673 6.8423 25 1 8.9893 13.4929 7.7363 26 6 6.8373 4.2592 4.3100 27 6 6.9233 3.1012 3.3101 28 1 6.7931 2.1547 3.8348 29 6 8.2878 3.1208 2.6182 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3854 2.1160 0.2660 34 1 2.4754 1.4868 -0.9927 35 1 3.2676 3.2694 1.3205 36 1 4.3578 2.6410 0.0616 37 1 6.6303 4.6667 0.9509 38 1 4.8543 4.5329 0.9712 39 1 4.7588 5.5936 3.1787 40 1 5.7011 6.6324 2.0817 41 1 7.2719 6.4460 5.3808 42 1 6.9096 8.2008 3.0404 43 1 8.4887 7.7056 3.6958 44 1 8.2915 10.3919 3.7829 45 1 8.9407 11.9931 3.4332 46 1 7.6789 4.2067 5.0005 47 1 5.9034 4.1898 4.8678 48 1 9.0751 3.0138 3.3645 49 1 8.3466 2.2965 1.9073 50 1 8.4139 4.0658 2.0900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569513891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:50 Heat of formation + Delta-G solvation = -90.048513 kcal Electronic energy + Delta-G solvation = -29267.977516 eV Core-core repulsion = 25102.996028 eV Total energy + Delta-G solvation = -4164.981488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77367 -38.92096 -38.33131 -37.60318 -35.32700 -34.30047 -34.21879 -33.04277 -31.39472 -30.95316 -28.84126 -28.11404 -26.24601 -25.90707 -24.20585 -23.76402 -22.30390 -21.05918 -20.41247 -19.71465 -18.66439 -17.93203 -17.91283 -16.91548 -16.79697 -16.61476 -16.03393 -15.67606 -15.44406 -15.26353 -14.91707 -14.50551 -14.42586 -14.09398 -13.95289 -13.76725 -13.57817 -13.49352 -13.35195 -13.00276 -12.58985 -12.53810 -12.49963 -12.38628 -12.05962 -11.93253 -11.52678 -11.42289 -11.34726 -11.23833 -10.99635 -10.92735 -10.44298 -10.43294 -10.22207 -9.96115 -9.88845 -9.77219 -9.57067 -8.98014 -8.54139 -8.18420 -8.05568 -6.77809 -3.91063 1.66905 2.30713 2.40592 3.29352 3.33586 3.46153 3.53762 3.81330 3.96706 4.13904 4.29670 4.41318 4.49913 4.58270 4.61346 4.69824 4.70778 4.73881 4.83347 4.87906 4.88101 5.04081 5.05472 5.13697 5.15522 5.17885 5.24297 5.31378 5.40397 5.41602 5.58979 5.65799 5.69006 5.75530 5.80587 5.84565 5.95349 5.99095 6.11680 6.15162 6.18839 6.25476 6.61978 7.06621 7.10729 7.54265 7.78457 7.88509 8.05708 8.57461 8.77377 9.44933 9.85112 10.65597 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.001779 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.947734 B =15738.257094 C =16464.395436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.045 3.955 6 C 0.519 3.481 7 O -0.521 6.521 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.047 0.953 13 N -0.664 5.664 14 C 0.052 3.948 15 C 0.442 3.558 16 O -0.576 6.576 17 N -0.576 5.576 18 C -0.383 4.383 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.901 5.901 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.130 4.130 27 C 0.142 3.858 28 H 0.102 0.898 29 C -0.163 4.163 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.352 0.648 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 -21.090 -13.042 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.279 6.279 5 C -0.035 4.035 6 C 0.306 3.694 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.065 0.935 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.228 3.772 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.512 4.512 19 H 0.117 0.883 20 C -0.211 4.211 21 N -0.540 5.540 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.169 4.169 27 C 0.039 3.961 28 H 0.120 0.880 29 C -0.221 4.221 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.172 0.828 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.208 0.792 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.455 -20.144 -11.751 24.806 hybrid contribution 0.726 -1.358 -1.080 1.881 sum -7.729 -21.502 -12.831 26.205 Atomic orbital electron populations 1.23861 0.95500 1.02419 0.99738 1.22699 0.95620 0.98114 1.00479 1.21630 0.88729 0.96360 0.92271 1.88040 1.44364 1.34884 1.60576 1.22263 0.93291 0.89327 0.98642 1.20170 0.82111 0.83594 0.83574 1.90723 1.72111 1.26768 1.49998 1.48145 1.31076 1.14114 1.40748 1.21846 1.02552 0.82906 0.94575 1.21946 0.99913 0.97563 0.96938 1.21508 0.97021 0.90102 0.93614 0.93513 1.60071 1.61028 1.02601 1.06020 1.21710 0.97193 0.91212 0.97992 1.19744 0.84600 0.83766 0.89091 1.90535 1.48384 1.82369 1.24661 1.41936 1.53129 1.09867 1.16443 1.20537 1.40426 0.91284 0.98955 0.88331 1.26510 0.94555 0.99370 1.00708 1.70907 1.42081 1.35184 1.05837 0.83132 0.76863 0.74586 0.73705 1.20410 1.20986 1.21022 1.22121 1.03778 0.93301 0.97692 1.21161 0.86199 1.00034 0.88675 0.87953 1.22167 0.96139 1.02398 1.01405 0.87654 0.88335 0.86424 0.92426 0.92062 0.89992 0.90204 0.90909 0.89802 0.90441 0.90368 0.82808 0.89766 0.94004 0.79185 0.92807 0.90458 0.90280 0.91152 0.92279 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.31 29.02 0.42 -0.63 16 2 C -0.15 -1.10 9.89 -36.02 -0.36 -1.45 16 3 C 0.09 0.62 6.35 36.01 0.23 0.85 16 4 O -0.36 -3.86 9.86 -55.14 -0.54 -4.41 16 5 C 0.04 0.37 4.76 36.00 0.17 0.54 16 6 C 0.52 5.92 7.78 -10.98 -0.09 5.84 16 7 O -0.52 -8.20 15.91 -14.35 -0.23 -8.43 16 8 N -0.61 -5.74 2.68 -165.20 -0.44 -6.18 16 9 C 0.10 0.76 5.93 -3.71 -0.02 0.73 16 10 C -0.12 -1.20 5.59 -26.62 -0.15 -1.35 16 11 C 0.09 0.96 2.25 -67.67 -0.15 0.81 16 12 H 0.05 0.48 6.17 -51.93 -0.32 0.16 16 13 N -0.66 -10.01 5.93 -107.95 -0.64 -10.65 16 14 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 15 C 0.44 10.22 7.82 -10.98 -0.09 10.13 16 16 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 17 N -0.58 -14.23 5.28 -10.97 -0.06 -14.29 16 18 C -0.38 -10.68 9.68 -14.93 -0.14 -10.82 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 20 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 21 N -0.90 -24.92 13.68 55.50 0.76 -24.16 16 22 Si 1.09 24.05 29.92 -169.99 -5.09 18.97 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.13 -1.34 4.84 -26.59 -0.13 -1.47 16 27 C 0.14 1.39 3.20 -67.58 -0.22 1.17 16 28 H 0.10 1.16 7.00 -51.93 -0.36 0.80 16 29 C -0.16 -1.33 9.03 37.16 0.34 -1.00 16 30 H 0.11 0.50 8.06 -52.48 -0.42 0.07 16 31 H 0.10 0.48 7.90 -52.49 -0.41 0.07 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.06 0.34 7.86 -51.93 -0.41 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.53 7.69 -51.93 -0.40 0.13 16 36 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 37 H 0.07 0.45 7.49 -51.93 -0.39 0.06 16 38 H 0.08 0.42 5.93 -51.93 -0.31 0.12 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.75 7.42 -51.93 -0.39 0.36 16 41 H 0.35 5.60 8.03 -39.29 -0.32 5.28 16 42 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 43 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 44 H 0.38 8.51 6.73 -40.82 -0.27 8.24 16 45 H 0.26 6.90 6.78 -40.82 -0.28 6.63 16 46 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.49 5.74 -51.93 -0.30 0.19 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -35.88 403.50 -8.31 -44.19 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.92 Total: 10.53 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.31 Total: 3.85 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.38 Total: -55.29 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.68 Total: -28.33 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.09 Total: 18.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.88 -8.31 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569513891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.860 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds