Wall clock time and date at job start Tue Mar 31 2020 23:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99862 * 2 1 4 4 O 1.42891 * 109.46766 * 135.00114 * 3 2 1 5 5 C 1.42909 * 113.99832 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46920 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00376 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99506 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63305 * 0.02562 * 8 6 5 10 10 C 1.53190 * 108.77627 * 126.37092 * 9 8 6 11 11 C 1.53032 * 109.31358 * 54.63502 * 10 9 8 12 12 H 1.09000 * 109.45382 * 58.64592 * 11 10 9 13 13 N 1.46903 * 109.45947 * 178.61330 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.06836 * 13 11 10 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99915 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00007 * 22 20 18 26 26 C 1.53045 * 109.53899 * 298.63245 * 11 10 9 27 27 C 1.46930 * 120.62580 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.58726 * 353.41653 * 27 8 6 29 29 C 1.52996 * 109.70186 * 113.77505 * 27 8 6 30 30 H 1.08003 * 120.00296 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00187 * 0.02562 * 1 2 3 32 32 H 1.07993 * 120.00077 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46422 * 15.00037 * 3 2 1 34 34 H 1.09000 * 109.47102 * 255.00200 * 3 2 1 35 35 H 1.08998 * 109.46619 * 59.99998 * 5 4 3 36 36 H 1.09003 * 109.47039 * 300.00409 * 5 4 3 37 37 H 1.09003 * 109.58488 * 246.16110 * 9 8 6 38 38 H 1.08998 * 109.58731 * 6.43612 * 9 8 6 39 39 H 1.08995 * 109.49470 * 294.67618 * 10 9 8 40 40 H 1.09000 * 109.49276 * 174.58674 * 10 9 8 41 41 H 1.00902 * 110.99560 * 151.11274 * 13 11 10 42 42 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 43 43 H 1.09006 * 109.47133 * 299.99542 * 14 13 11 44 44 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 46 46 H 1.08992 * 109.49945 * 181.31689 * 26 11 10 47 47 H 1.09000 * 109.49716 * 301.41644 * 26 11 10 48 48 H 1.09001 * 109.47216 * 179.35655 * 29 27 8 49 49 H 1.09007 * 109.47297 * 299.35574 * 29 27 8 50 50 H 1.08995 * 109.47680 * 59.35591 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 6 3.9077 2.4353 1.0328 6 6 4.9940 2.2568 2.0619 7 8 5.0902 1.2099 2.6667 8 7 5.8586 3.2605 2.3101 9 6 5.7543 4.5346 1.5860 10 6 5.6818 5.6763 2.6048 11 6 6.8814 5.5874 3.5509 12 1 7.8041 5.6452 2.9736 13 7 6.8328 6.7002 4.5086 14 6 7.4467 7.9089 3.9428 15 6 7.3789 9.0262 4.9519 16 8 6.8690 8.8346 6.0356 17 7 7.8841 10.2386 4.6497 18 6 7.8220 11.2552 5.5675 19 1 7.3680 11.0846 6.5324 20 6 8.3432 12.5050 5.2562 21 7 8.8961 12.7125 4.0822 22 14 8.2580 13.8904 6.5064 23 1 8.8793 15.1119 5.9348 24 1 6.8382 14.1673 6.8423 25 1 8.9893 13.4929 7.7363 26 6 6.8373 4.2592 4.3100 27 6 6.9233 3.1012 3.3101 28 1 6.7931 2.1547 3.8348 29 6 8.2878 3.1208 2.6182 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3854 2.1160 0.2660 34 1 2.4754 1.4868 -0.9927 35 1 3.2676 3.2694 1.3205 36 1 4.3578 2.6410 0.0616 37 1 6.6303 4.6667 0.9509 38 1 4.8543 4.5329 0.9712 39 1 4.7588 5.5936 3.1787 40 1 5.7011 6.6324 2.0817 41 1 7.2719 6.4460 5.3808 42 1 6.9096 8.2008 3.0404 43 1 8.4887 7.7056 3.6958 44 1 8.2915 10.3919 3.7829 45 1 8.9407 11.9931 3.4332 46 1 7.6789 4.2067 5.0005 47 1 5.9034 4.1898 4.8678 48 1 9.0751 3.0138 3.3645 49 1 8.3466 2.2965 1.9073 50 1 8.4139 4.0658 2.0900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569513891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:49 Heat of formation + Delta-G solvation = -116.038230 kcal Electronic energy + Delta-G solvation = -29269.104515 eV Core-core repulsion = 25102.996028 eV Total energy + Delta-G solvation = -4166.108486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58314 -40.34773 -39.44043 -38.48489 -36.65063 -36.00317 -34.82296 -33.80343 -33.15247 -32.19290 -29.63345 -28.87029 -27.61111 -26.51374 -25.76878 -24.71347 -23.19316 -21.85759 -21.48147 -20.92717 -19.96418 -19.48869 -18.70804 -18.07558 -17.57389 -17.40256 -17.01710 -16.89501 -16.65410 -16.25604 -15.94476 -15.59960 -15.56730 -15.38266 -15.13390 -15.01859 -14.42049 -14.37402 -14.12899 -13.94995 -13.80220 -13.45576 -13.32674 -13.17129 -13.10753 -12.98426 -12.83007 -12.76281 -12.42365 -12.14820 -11.91432 -11.90985 -11.88481 -11.79054 -11.51790 -11.28734 -11.01713 -10.79465 -10.39002 -10.27580 -10.09824 -9.77181 -9.36476 -8.91500 -6.05564 1.17023 1.48805 1.53321 1.55578 1.72509 1.83298 2.02179 2.40929 2.78644 2.89224 3.17695 3.33819 3.46500 3.72647 3.74917 3.96403 4.03093 4.10404 4.12502 4.15227 4.17772 4.19018 4.24103 4.37294 4.38536 4.42656 4.47585 4.50195 4.52315 4.59389 4.64375 4.67313 4.87115 4.95242 4.96753 5.00900 5.05890 5.21249 5.39019 5.49019 5.61058 5.64765 5.68971 5.96213 6.03538 6.06094 6.33427 6.34100 6.59579 6.76071 7.08044 7.45671 7.94633 8.56438 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.001779 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.947734 B =15738.257094 C =16464.395436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.397 6.397 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.601 5.601 9 C 0.105 3.895 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.066 0.934 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.586 5.586 18 C -0.412 4.412 19 H 0.071 0.929 20 C -0.040 4.040 21 N -0.916 5.916 22 Si 1.132 2.868 23 H -0.272 1.272 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.123 4.123 27 C 0.143 3.857 28 H 0.080 0.920 29 C -0.155 4.155 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.343 0.657 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.385 0.615 45 H 0.260 0.740 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -20.542 -15.231 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.299 3.701 7 O -0.456 6.456 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.083 0.917 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.228 3.772 16 O -0.506 6.506 17 N -0.225 5.225 18 C -0.541 4.541 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.555 5.555 22 Si 0.952 3.048 23 H -0.197 1.197 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.162 4.162 27 C 0.039 3.961 28 H 0.098 0.902 29 C -0.213 4.213 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.163 0.837 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.220 0.780 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.510 -19.590 -13.997 25.536 hybrid contribution 0.693 -1.611 -0.381 1.795 sum -7.818 -21.201 -14.378 26.783 Atomic orbital electron populations 1.24064 0.95105 1.03475 0.97852 1.22792 0.96284 0.98129 1.02300 1.21799 0.88292 0.96574 0.92521 1.87998 1.45517 1.36309 1.61865 1.22411 0.92648 0.89229 0.99073 1.20868 0.82596 0.83026 0.83606 1.90694 1.73632 1.29050 1.52248 1.48243 1.30316 1.14618 1.40309 1.22056 1.05134 0.80503 0.93958 1.21933 0.98254 0.99007 0.96991 1.21617 0.98600 0.88569 0.93132 0.91659 1.60111 1.61094 1.03452 1.06675 1.21581 0.99360 0.89232 0.96239 1.20970 0.82202 0.84458 0.89586 1.90508 1.49755 1.83247 1.27087 1.41979 1.53938 1.10095 1.16495 1.20510 1.41690 0.92944 0.98967 0.91074 1.27759 0.93419 1.01067 1.01631 1.70971 1.42800 1.35426 1.06301 0.82642 0.77532 0.72387 0.72221 1.19687 1.19958 1.19943 1.22029 1.02924 0.93431 0.97774 1.21088 0.87511 0.98573 0.88921 0.90226 1.22106 0.94936 1.02877 1.01413 0.86768 0.87117 0.87513 0.91065 0.90257 0.87786 0.86877 0.88677 0.86916 0.92257 0.89563 0.83735 0.87363 0.91367 0.78044 0.92898 0.89977 0.92399 0.90503 0.92482 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.31 67.78 0.97 -0.79 16 2 C -0.18 -2.47 9.89 25.65 0.25 -2.22 16 3 C 0.08 1.08 6.35 71.24 0.45 1.53 16 4 O -0.40 -8.19 9.86 -129.94 -1.28 -9.47 16 5 C 0.05 0.66 4.76 71.23 0.34 0.99 16 6 C 0.51 11.26 7.78 87.65 0.68 11.94 16 7 O -0.58 -18.77 15.91 16.01 0.25 -18.52 16 8 N -0.60 -10.39 2.68 -794.96 -2.13 -12.53 16 9 C 0.11 1.15 5.93 86.36 0.51 1.66 16 10 C -0.12 -2.02 5.59 30.67 0.17 -1.85 16 11 C 0.09 1.77 2.25 44.94 0.10 1.87 16 12 H 0.07 1.10 6.17 -2.39 -0.01 1.08 16 13 N -0.68 -19.55 5.93 -495.44 -2.94 -22.49 16 14 C 0.07 2.10 5.96 85.56 0.51 2.61 16 15 C 0.44 20.17 7.82 87.66 0.69 20.86 16 16 O -0.62 -34.09 15.78 -3.07 -0.05 -34.14 16 17 N -0.59 -28.92 5.28 -306.99 -1.62 -30.54 16 18 C -0.41 -23.25 9.68 84.04 0.81 -22.43 16 19 H 0.07 4.34 7.16 -2.91 -0.02 4.32 16 20 C -0.04 -2.16 5.50 84.93 0.47 -1.69 16 21 N -0.92 -50.04 13.68 21.66 0.30 -49.74 16 22 Si 1.13 47.93 29.92 68.60 2.05 49.98 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 C -0.12 -2.44 4.84 30.69 0.15 -2.29 16 27 C 0.14 2.68 3.20 44.99 0.14 2.82 16 28 H 0.08 1.89 7.00 -2.39 -0.02 1.87 16 29 C -0.16 -2.23 9.03 71.98 0.65 -1.58 16 30 H 0.11 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.11 0.87 7.90 -2.91 -0.02 0.84 16 32 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.07 0.68 7.86 -2.39 -0.02 0.67 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 1.02 7.69 -2.39 -0.02 1.00 16 36 H 0.11 0.85 7.94 -2.39 -0.02 0.83 16 37 H 0.10 0.71 7.49 -2.39 -0.02 0.70 16 38 H 0.11 0.63 5.93 -2.39 -0.01 0.61 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.32 7.42 -2.39 -0.02 1.30 16 41 H 0.34 10.78 8.03 -89.69 -0.72 10.06 16 42 H 0.11 2.87 7.41 -2.39 -0.02 2.85 16 43 H 0.07 1.79 8.06 -2.38 -0.02 1.77 16 44 H 0.39 17.23 6.73 -92.71 -0.62 16.60 16 45 H 0.26 13.63 6.78 -92.71 -0.63 13.01 16 46 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.07 0.89 5.74 -2.39 -0.01 0.88 16 Total: -1.00 -80.95 403.50 1.23 -79.72 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.25 Total: 36.28 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.90 Total: 11.44 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -6.40 Total: -115.30 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.07 Total: -62.12 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.05 Total: 49.98 kcal Total: -80.95 1.23 -79.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569513891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.318 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds