Wall clock time and date at job start Tue Mar 31 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99976 * 2 1 4 4 O 1.42901 * 109.47372 * 135.00042 * 3 2 1 5 5 C 1.42895 * 113.99948 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65021 * 359.69615 * 8 6 5 10 10 C 1.55124 * 104.72460 * 155.81535 * 9 8 6 11 11 H 1.09005 * 110.90854 * 155.27047 * 10 9 8 12 12 C 1.52990 * 111.22620 * 279.17527 * 10 9 8 13 13 C 1.55156 * 101.48615 * 37.29751 * 10 9 8 14 14 H 1.08999 * 110.87618 * 82.76291 * 13 10 9 15 15 C 1.53001 * 110.72335 * 205.96949 * 13 10 9 16 16 N 1.46896 * 109.47274 * 179.97438 * 15 13 10 17 17 C 1.46908 * 110.99906 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47108 * 180.02562 * 17 16 15 19 19 O 1.21299 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47347 * 90.00103 * 25 23 21 27 27 H 1.48498 * 109.47500 * 210.00254 * 25 23 21 28 28 H 1.48504 * 109.47140 * 330.00711 * 25 23 21 29 29 C 1.47025 * 125.64574 * 180.02562 * 8 6 5 30 30 H 1.07999 * 120.00099 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99722 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00054 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47360 * 14.99459 * 3 2 1 34 34 H 1.09003 * 109.46932 * 255.00152 * 3 2 1 35 35 H 1.09001 * 109.46798 * 60.00190 * 5 4 3 36 36 H 1.09000 * 109.47736 * 300.00432 * 5 4 3 37 37 H 1.09006 * 110.36824 * 274.74806 * 9 8 6 38 38 H 1.08998 * 110.37021 * 37.06511 * 9 8 6 39 39 H 1.09003 * 109.47123 * 172.20367 * 12 10 9 40 40 H 1.08998 * 109.47607 * 292.20279 * 12 10 9 41 41 H 1.09005 * 109.47510 * 52.20911 * 12 10 9 42 42 H 1.09000 * 109.46917 * 299.97537 * 15 13 10 43 43 H 1.09007 * 109.46644 * 59.97140 * 15 13 10 44 44 H 1.00894 * 110.99931 * 56.05048 * 16 15 13 45 45 H 1.09000 * 109.46560 * 300.00160 * 17 16 15 46 46 H 1.09000 * 109.47155 * 60.00278 * 17 16 15 47 47 H 0.97001 * 119.99865 * 0.02562 * 20 18 17 48 48 H 0.97008 * 119.99669 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.88278 * 300.44110 * 29 8 6 50 50 H 1.09004 * 109.87918 * 61.45412 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0320 6 6 4.9940 2.2570 2.0620 7 8 5.0891 1.2108 2.6681 8 7 5.8590 3.2604 2.3097 9 6 5.8619 4.5761 1.6447 10 6 6.5637 5.5251 2.6513 11 1 7.0082 6.3774 2.1373 12 6 5.5961 5.9896 3.7415 13 6 7.6594 4.5968 3.2386 14 1 8.5319 4.5646 2.5861 15 6 8.0547 5.0489 4.6459 16 7 9.0911 4.1525 5.1751 17 6 9.4958 4.5567 6.5283 18 6 10.5581 3.6166 7.0367 19 8 10.9409 2.7002 6.3402 20 7 11.0837 3.7945 8.2650 21 6 12.0498 2.9389 8.7278 22 1 12.3900 2.1225 8.1079 23 6 12.5913 3.1220 9.9942 24 7 12.1770 4.1150 10.7486 25 14 13.9081 1.9567 10.6245 26 1 15.2483 2.4740 10.2483 27 1 13.8135 1.8559 12.1030 28 1 13.7095 0.6135 10.0231 29 6 6.9603 3.2216 3.2830 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4755 1.4868 -0.9927 35 1 3.2688 3.2696 1.3191 36 1 4.3586 2.6397 0.0607 37 1 6.4223 4.5280 0.7110 38 1 4.8409 4.9093 1.4584 39 1 6.1464 6.5385 4.5058 40 1 4.8385 6.6388 3.3026 41 1 5.1142 5.1225 4.1932 42 1 8.4413 6.0672 4.6051 43 1 7.1806 5.0179 5.2964 44 1 9.8867 4.1141 4.5558 45 1 9.8923 5.5717 6.5009 46 1 8.6316 4.5219 7.1916 47 1 10.7779 4.5275 8.8218 48 1 12.5553 4.2431 11.6326 49 1 6.5655 3.0386 4.2823 50 1 7.6657 2.4355 3.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569832772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:01 Heat of formation + Delta-G solvation = -89.942896 kcal Electronic energy + Delta-G solvation = -28762.270744 eV Core-core repulsion = 24597.293836 eV Total energy + Delta-G solvation = -4164.976908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54308 -38.89300 -38.20696 -37.62263 -35.38186 -34.24416 -33.85669 -32.89883 -31.21621 -30.53726 -28.96459 -27.07443 -26.93156 -25.88845 -24.72126 -23.48873 -22.25945 -20.54428 -19.82920 -19.54281 -19.08274 -17.87063 -17.68462 -17.07600 -16.75467 -16.21101 -16.00605 -15.89665 -15.47763 -14.98113 -14.77171 -14.58558 -14.44820 -14.04824 -13.80567 -13.59939 -13.50811 -13.35009 -13.07091 -12.77117 -12.64920 -12.45575 -12.42923 -12.19229 -12.15805 -11.75255 -11.55142 -11.48632 -11.40946 -11.06467 -10.99189 -10.88434 -10.70898 -10.40684 -10.37103 -10.19364 -9.93054 -9.75193 -9.48579 -8.80431 -8.44576 -8.05013 -7.93560 -6.39606 -3.80233 1.68924 2.43980 2.49998 3.19848 3.28458 3.35015 3.55948 3.92126 3.96408 4.11211 4.17424 4.31433 4.45892 4.57852 4.63057 4.66092 4.71001 4.77989 4.88198 4.89623 5.04143 5.04705 5.08339 5.13493 5.19944 5.25317 5.28519 5.42937 5.45033 5.54075 5.58605 5.69015 5.77436 5.81902 5.90796 5.98602 6.03039 6.06086 6.14027 6.16649 6.19931 6.28521 6.65634 7.19469 7.29253 7.57564 7.65293 8.01259 8.08770 8.63673 9.20351 9.56684 10.08299 10.78168 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.001727 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.107267 B =16205.599923 C =17329.338607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.050 3.950 6 C 0.526 3.474 7 O -0.513 6.513 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.099 4.099 11 H 0.092 0.908 12 C -0.147 4.147 13 C -0.091 4.091 14 H 0.087 0.913 15 C 0.067 3.933 16 N -0.669 5.669 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.125 3.875 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 7.403 -22.423 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.277 6.277 5 C -0.030 4.030 6 C 0.312 3.688 7 O -0.387 6.387 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.118 4.118 11 H 0.111 0.889 12 C -0.204 4.204 13 C -0.111 4.111 14 H 0.105 0.895 15 C -0.062 4.062 16 N -0.302 5.302 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C 0.003 3.997 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.899 5.530 -22.029 30.865 hybrid contribution 0.964 1.075 0.363 1.489 sum -19.935 6.605 -21.666 30.174 Atomic orbital electron populations 1.23845 0.95479 1.02358 0.99948 1.22720 0.95633 0.98203 1.00271 1.21620 0.88707 0.96303 0.92295 1.88062 1.44289 1.34923 1.60468 1.22165 0.93098 0.89152 0.98545 1.19806 0.81966 0.83067 0.83921 1.90783 1.71808 1.26297 1.49777 1.48468 1.31750 1.14263 1.41175 1.22497 1.01166 0.82658 0.95973 1.22395 0.95928 0.97236 0.96279 0.88942 1.21814 0.98771 1.01420 0.98401 1.22264 0.97592 0.93928 0.97302 0.89510 1.22037 0.96305 0.93770 0.94113 1.60062 1.15443 1.51566 1.03113 1.21655 0.98602 0.96516 0.91304 1.19816 0.85918 0.88079 0.83597 1.90532 1.64141 1.34424 1.57511 1.41861 1.35685 1.28736 1.13811 1.19713 1.14266 1.09449 0.99435 0.87919 1.25251 0.99047 0.97551 0.96082 1.69615 1.43581 1.30291 1.10897 0.85856 0.80342 0.80402 0.77687 1.20454 1.20933 1.19393 1.21917 0.87562 0.97389 0.92782 0.87637 0.88426 0.86318 0.92566 0.92084 0.90386 0.90342 0.90989 0.90643 0.91551 0.92519 0.92166 0.94934 0.90420 0.83168 0.93910 0.89634 0.77488 0.91915 0.90486 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 14.31 29.01 0.42 -0.65 16 2 C -0.15 -1.14 9.89 -36.03 -0.36 -1.49 16 3 C 0.09 0.64 6.35 36.01 0.23 0.87 16 4 O -0.36 -4.06 9.86 -55.14 -0.54 -4.60 16 5 C 0.05 0.44 5.42 36.01 0.20 0.63 16 6 C 0.53 6.71 7.93 -10.98 -0.09 6.63 16 7 O -0.51 -9.34 16.83 -14.35 -0.24 -9.58 16 8 N -0.62 -6.50 3.31 -170.38 -0.56 -7.07 16 9 C 0.10 0.63 6.17 -2.42 -0.01 0.61 16 10 C -0.10 -0.64 3.53 -88.36 -0.31 -0.95 16 11 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 12 C -0.15 -0.98 8.15 37.15 0.30 -0.67 16 13 C -0.09 -0.85 2.99 -88.78 -0.27 -1.12 16 14 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 15 C 0.07 0.74 3.94 -3.83 -0.02 0.73 16 16 N -0.67 -10.39 5.94 -115.05 -0.68 -11.07 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 19 O -0.58 -16.00 15.78 5.54 0.09 -15.92 16 20 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 C 0.13 1.53 5.97 -3.06 -0.02 1.51 16 30 H 0.11 0.52 8.06 -52.49 -0.42 0.09 16 31 H 0.10 0.46 7.90 -52.48 -0.41 0.05 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.33 7.40 -51.93 -0.38 -0.06 16 39 H 0.07 0.45 6.76 -51.93 -0.35 0.10 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.51 7.91 -51.93 -0.41 0.09 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.86 6.67 -51.93 -0.35 0.51 16 44 H 0.35 5.56 8.43 -39.30 -0.33 5.23 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 414.20 15.07 6.24 6.24 Total: -1.00 -36.14 414.20 -8.71 -44.85 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.36 Total: 10.07 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.29 Total: 9.26 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.58 Total: -56.64 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.70 Total: -30.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.14 -8.71 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569832772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.091 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds