Wall clock time and date at job start Tue Mar 31 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99976 * 2 1 4 4 O 1.42901 * 109.47372 * 135.00042 * 3 2 1 5 5 C 1.42895 * 113.99948 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65021 * 359.69615 * 8 6 5 10 10 C 1.55124 * 104.72460 * 155.81535 * 9 8 6 11 11 H 1.09005 * 110.90854 * 155.27047 * 10 9 8 12 12 C 1.52990 * 111.22620 * 279.17527 * 10 9 8 13 13 C 1.55156 * 101.48615 * 37.29751 * 10 9 8 14 14 H 1.08999 * 110.87618 * 82.76291 * 13 10 9 15 15 C 1.53001 * 110.72335 * 205.96949 * 13 10 9 16 16 N 1.46896 * 109.47274 * 179.97438 * 15 13 10 17 17 C 1.46908 * 110.99906 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47108 * 180.02562 * 17 16 15 19 19 O 1.21299 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47347 * 90.00103 * 25 23 21 27 27 H 1.48498 * 109.47500 * 210.00254 * 25 23 21 28 28 H 1.48504 * 109.47140 * 330.00711 * 25 23 21 29 29 C 1.47025 * 125.64574 * 180.02562 * 8 6 5 30 30 H 1.07999 * 120.00099 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99722 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00054 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47360 * 14.99459 * 3 2 1 34 34 H 1.09003 * 109.46932 * 255.00152 * 3 2 1 35 35 H 1.09001 * 109.46798 * 60.00190 * 5 4 3 36 36 H 1.09000 * 109.47736 * 300.00432 * 5 4 3 37 37 H 1.09006 * 110.36824 * 274.74806 * 9 8 6 38 38 H 1.08998 * 110.37021 * 37.06511 * 9 8 6 39 39 H 1.09003 * 109.47123 * 172.20367 * 12 10 9 40 40 H 1.08998 * 109.47607 * 292.20279 * 12 10 9 41 41 H 1.09005 * 109.47510 * 52.20911 * 12 10 9 42 42 H 1.09000 * 109.46917 * 299.97537 * 15 13 10 43 43 H 1.09007 * 109.46644 * 59.97140 * 15 13 10 44 44 H 1.00894 * 110.99931 * 56.05048 * 16 15 13 45 45 H 1.09000 * 109.46560 * 300.00160 * 17 16 15 46 46 H 1.09000 * 109.47155 * 60.00278 * 17 16 15 47 47 H 0.97001 * 119.99865 * 0.02562 * 20 18 17 48 48 H 0.97008 * 119.99669 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.88278 * 300.44110 * 29 8 6 50 50 H 1.09004 * 109.87918 * 61.45412 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0320 6 6 4.9940 2.2570 2.0620 7 8 5.0891 1.2108 2.6681 8 7 5.8590 3.2604 2.3097 9 6 5.8619 4.5761 1.6447 10 6 6.5637 5.5251 2.6513 11 1 7.0082 6.3774 2.1373 12 6 5.5961 5.9896 3.7415 13 6 7.6594 4.5968 3.2386 14 1 8.5319 4.5646 2.5861 15 6 8.0547 5.0489 4.6459 16 7 9.0911 4.1525 5.1751 17 6 9.4958 4.5567 6.5283 18 6 10.5581 3.6166 7.0367 19 8 10.9409 2.7002 6.3402 20 7 11.0837 3.7945 8.2650 21 6 12.0498 2.9389 8.7278 22 1 12.3900 2.1225 8.1079 23 6 12.5913 3.1220 9.9942 24 7 12.1770 4.1150 10.7486 25 14 13.9081 1.9567 10.6245 26 1 15.2483 2.4740 10.2483 27 1 13.8135 1.8559 12.1030 28 1 13.7095 0.6135 10.0231 29 6 6.9603 3.2216 3.2830 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4755 1.4868 -0.9927 35 1 3.2688 3.2696 1.3191 36 1 4.3586 2.6397 0.0607 37 1 6.4223 4.5280 0.7110 38 1 4.8409 4.9093 1.4584 39 1 6.1464 6.5385 4.5058 40 1 4.8385 6.6388 3.3026 41 1 5.1142 5.1225 4.1932 42 1 8.4413 6.0672 4.6051 43 1 7.1806 5.0179 5.2964 44 1 9.8867 4.1141 4.5558 45 1 9.8923 5.5717 6.5009 46 1 8.6316 4.5219 7.1916 47 1 10.7779 4.5275 8.8218 48 1 12.5553 4.2431 11.6326 49 1 6.5655 3.0386 4.2823 50 1 7.6657 2.4355 3.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569832772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:01 Heat of formation + Delta-G solvation = -117.348818 kcal Electronic energy + Delta-G solvation = -28763.459154 eV Core-core repulsion = 24597.293836 eV Total energy + Delta-G solvation = -4166.165318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38185 -40.17818 -39.54544 -38.49325 -36.65196 -35.82658 -34.78377 -33.82103 -33.25740 -31.39520 -29.84570 -28.22199 -27.63448 -26.77515 -26.08575 -24.74553 -23.08754 -21.20616 -21.08589 -20.43078 -20.26139 -19.86265 -18.46447 -17.83209 -17.77822 -17.42322 -16.90805 -16.82378 -16.69565 -16.38395 -16.02283 -15.71162 -15.46719 -15.34729 -15.18807 -14.61677 -14.38612 -14.17248 -14.07468 -13.96238 -13.53098 -13.43355 -13.30594 -13.13978 -13.08022 -13.01801 -12.87425 -12.85438 -12.54833 -12.43153 -12.13865 -11.90417 -11.71487 -11.57788 -11.51965 -11.43801 -11.02908 -10.87964 -10.35569 -10.27142 -10.02348 -9.70186 -9.27794 -8.47842 -5.96561 1.17172 1.36832 1.40598 1.51319 1.53505 1.75265 2.04673 2.28428 2.89109 2.97477 3.19477 3.38633 3.49755 3.61105 3.75970 3.91344 4.03934 4.12792 4.18056 4.22139 4.25199 4.29916 4.33150 4.42837 4.44470 4.52626 4.57028 4.59590 4.63427 4.67328 4.71870 4.78493 4.89669 4.96836 4.97770 5.10815 5.21580 5.22741 5.29147 5.39793 5.51743 5.64804 5.69200 5.88944 6.08998 6.11240 6.43863 6.48676 6.59458 7.09957 7.11803 7.55412 8.11318 8.69524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.001727 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.107267 B =16205.599923 C =17329.338607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.181 4.181 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.057 3.943 6 C 0.513 3.487 7 O -0.587 6.587 8 N -0.614 5.614 9 C 0.094 3.906 10 C -0.087 4.087 11 H 0.126 0.874 12 C -0.147 4.147 13 C -0.084 4.084 14 H 0.094 0.906 15 C 0.071 3.929 16 N -0.690 5.690 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.268 1.268 27 H -0.270 1.270 28 H -0.276 1.276 29 C 0.125 3.875 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.345 0.655 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.044 0.956 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.096 10.529 -24.036 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.010 3.990 4 O -0.322 6.322 5 C -0.022 4.022 6 C 0.302 3.698 7 O -0.466 6.466 8 N -0.349 5.349 9 C -0.027 4.027 10 C -0.106 4.106 11 H 0.143 0.857 12 C -0.204 4.204 13 C -0.103 4.103 14 H 0.113 0.887 15 C -0.058 4.058 16 N -0.323 5.323 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.201 1.201 29 C 0.003 3.997 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.164 0.836 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.225 8.743 -23.665 33.622 hybrid contribution 1.308 0.105 0.838 1.557 sum -20.917 8.848 -22.827 32.201 Atomic orbital electron populations 1.24061 0.94944 1.03563 0.97654 1.22807 0.96423 0.98167 1.02488 1.21805 0.88205 0.96567 0.92448 1.88017 1.45637 1.36592 1.61930 1.22285 0.92196 0.89286 0.98436 1.20800 0.82701 0.82303 0.83986 1.90740 1.73894 1.29303 1.52712 1.48568 1.30298 1.15611 1.40435 1.22892 1.03605 0.79937 0.96219 1.22447 0.94568 0.97471 0.96121 0.85655 1.21824 0.99278 1.00777 0.98530 1.22231 0.98606 0.92741 0.96749 0.88747 1.22117 0.94764 0.94119 0.94768 1.60046 1.16059 1.53819 1.02363 1.21495 0.96753 0.95786 0.92414 1.20979 0.86076 0.88133 0.82520 1.90499 1.65672 1.36530 1.58468 1.41926 1.35734 1.28704 1.14660 1.19666 1.16385 1.10234 1.00313 0.90531 1.26017 1.00585 0.98916 0.95605 1.69669 1.44135 1.30955 1.11223 0.84937 0.77962 0.77930 0.77548 1.19379 1.19440 1.20122 1.21746 0.87723 0.98557 0.91723 0.86942 0.86685 0.88008 0.90485 0.90272 0.86971 0.87008 0.88749 0.87458 0.91598 0.90211 0.94637 0.92340 0.90583 0.83644 0.91031 0.88271 0.76921 0.91266 0.93744 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 14.31 67.78 0.97 -0.79 16 2 C -0.18 -2.69 9.89 25.65 0.25 -2.44 16 3 C 0.09 1.12 6.35 71.24 0.45 1.57 16 4 O -0.40 -8.95 9.86 -129.94 -1.28 -10.23 16 5 C 0.06 0.88 5.42 71.24 0.39 1.26 16 6 C 0.51 13.35 7.93 87.66 0.69 14.04 16 7 O -0.59 -23.16 16.83 16.01 0.27 -22.89 16 8 N -0.61 -12.59 3.31 -811.34 -2.69 -15.28 16 9 C 0.09 0.84 6.17 86.93 0.54 1.37 16 10 C -0.09 -0.80 3.53 -9.33 -0.03 -0.83 16 11 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 12 C -0.15 -1.49 8.15 71.98 0.59 -0.90 16 13 C -0.08 -1.45 2.99 -9.60 -0.03 -1.47 16 14 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.07 1.46 3.94 86.30 0.34 1.80 16 16 N -0.69 -21.42 5.94 -517.92 -3.07 -24.49 16 17 C 0.07 2.32 6.17 85.55 0.53 2.85 16 18 C 0.44 21.24 7.82 87.65 0.69 21.92 16 19 O -0.63 -35.84 15.78 -3.09 -0.05 -35.89 16 20 N -0.57 -30.05 5.29 -306.98 -1.62 -31.67 16 21 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 25 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 C 0.13 3.23 5.97 86.73 0.52 3.75 16 30 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.11 0.80 7.90 -2.91 -0.02 0.78 16 32 H 0.10 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.08 0.65 7.86 -2.39 -0.02 0.63 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.93 7.85 -2.39 -0.02 0.91 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 38 H 0.11 0.35 7.40 -2.39 -0.02 0.33 16 39 H 0.07 0.69 6.76 -2.39 -0.02 0.67 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.03 0.54 7.91 -2.38 -0.02 0.52 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.61 6.67 -2.38 -0.02 1.59 16 44 H 0.34 11.10 8.43 -89.70 -0.76 10.34 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 47 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 48 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 49 H 0.04 1.41 7.77 -2.39 -0.02 1.39 16 50 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -85.88 414.20 0.49 -85.40 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.55 Total: 35.83 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 7.17 Total: 23.19 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.10 Total: -121.31 kcal Atomic # 8 Polarization: -67.95 SS G_CDS: -1.06 Total: -69.01 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -85.88 0.49 -85.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569832772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.953 kcal (2) G-P(sol) polarization free energy of solvation -85.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds