Wall clock time and date at job start Tue Mar 31 2020 23:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00356 * 2 1 4 4 O 1.42904 * 109.47282 * 135.00040 * 3 2 1 5 5 C 1.42901 * 113.99880 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.46746 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99813 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83663 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31414 * 119.99692 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00158 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46896 * 89.99806 * 25 23 21 27 27 H 1.48499 * 109.47039 * 209.99966 * 25 23 21 28 28 H 1.48502 * 109.46906 * 329.99872 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.90947 * 8 6 5 30 30 H 1.08008 * 119.99261 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00261 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99279 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47200 * 15.00087 * 3 2 1 34 34 H 1.09002 * 109.47259 * 255.00160 * 3 2 1 35 35 H 1.08996 * 109.47375 * 60.00123 * 5 4 3 36 36 H 1.08993 * 109.47002 * 299.99778 * 5 4 3 37 37 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 38 38 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 39 39 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 40 40 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 41 41 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 42 42 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 43 43 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 44 44 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 45 45 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 46 46 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 47 47 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 48 48 H 0.96995 * 119.99830 * 180.02562 * 24 23 21 49 49 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 50 50 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9086 2.4347 1.0320 6 6 4.9941 2.2566 2.0621 7 8 5.0892 1.2104 2.6682 8 7 5.8599 3.2596 2.3090 9 6 5.9048 4.5980 1.6755 10 6 6.2428 5.5648 2.8307 11 1 5.3314 5.9946 3.2462 12 6 7.1771 6.6729 2.3408 13 6 6.9535 4.6916 3.8858 14 1 6.3911 4.6926 4.8195 15 6 8.3777 5.1978 4.1232 16 7 9.0069 4.4072 5.1895 17 6 10.3789 4.8656 5.4451 18 6 10.9907 4.0327 6.5418 19 8 10.3474 3.1443 7.0594 20 7 12.2533 4.2744 6.9469 21 6 12.8098 3.5170 7.9451 22 1 12.2366 2.7266 8.4065 23 6 14.1134 3.7625 8.3588 24 7 14.6469 3.0362 9.3153 25 14 15.1074 5.1248 7.5555 26 1 14.8969 6.3942 8.2968 27 1 16.5487 4.7683 7.5834 28 1 14.6668 5.2948 6.1476 29 6 6.9826 3.2725 3.2780 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3857 2.1160 0.2660 34 1 2.4756 1.4867 -0.9927 35 1 3.2692 3.2695 1.3191 36 1 4.3589 2.6393 0.0608 37 1 4.9355 4.8466 1.2431 38 1 6.6821 4.6313 0.9122 39 1 8.0658 6.2276 1.8935 40 1 6.6615 7.2804 1.5970 41 1 7.4696 7.3002 3.1828 42 1 8.3460 6.2464 4.4188 43 1 8.9570 5.0963 3.2056 44 1 8.9902 3.4229 4.9677 45 1 10.3615 5.9120 5.7497 46 1 10.9719 4.7615 4.5364 47 1 12.7680 4.9847 6.5327 48 1 15.5568 3.2077 9.6043 49 1 7.9286 3.0979 2.7654 50 1 6.8258 2.5234 4.0541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569832773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:05 Heat of formation + Delta-G solvation = -78.750925 kcal Electronic energy + Delta-G solvation = -28733.656690 eV Core-core repulsion = 24569.165103 eV Total energy + Delta-G solvation = -4164.491587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56925 -39.02403 -38.37961 -37.73837 -35.44189 -34.28594 -33.93280 -33.17838 -31.65488 -30.71092 -29.08114 -27.13758 -26.72106 -25.91962 -24.72834 -23.58249 -22.61835 -20.61091 -19.75932 -19.51815 -19.17353 -18.26618 -17.81054 -17.02713 -16.82944 -16.51884 -16.11240 -15.73490 -15.65618 -15.09897 -14.94899 -14.80018 -14.53905 -14.27109 -14.02072 -13.61341 -13.50025 -13.13606 -12.90849 -12.81876 -12.75722 -12.66526 -12.43178 -12.36000 -12.26516 -12.13525 -11.91741 -11.68843 -11.45011 -11.16153 -10.97871 -10.85046 -10.68745 -10.59119 -10.46397 -10.03587 -9.96170 -9.79956 -9.56011 -9.05642 -8.58330 -8.18535 -8.13529 -6.29560 -3.81007 1.64701 2.32664 2.35841 3.02532 3.07132 3.15315 3.47224 3.75315 3.92917 4.10783 4.11722 4.18462 4.37280 4.48693 4.58079 4.60051 4.64883 4.70812 4.77219 4.84844 4.91532 4.98919 5.01065 5.01661 5.12182 5.17655 5.23048 5.33863 5.38525 5.39885 5.42745 5.56961 5.61487 5.72778 5.78781 5.81883 5.85340 5.92369 5.94996 6.10614 6.13410 6.15705 6.59224 7.07686 7.21025 7.54777 7.59737 7.89027 8.16384 8.61317 8.96737 9.43922 9.84385 10.83656 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.001718 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.657705 B =16289.989723 C =17345.711987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.051 3.949 6 C 0.533 3.467 7 O -0.513 6.513 8 N -0.625 5.625 9 C 0.102 3.898 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.148 4.148 13 C -0.097 4.097 14 H 0.095 0.905 15 C 0.067 3.933 16 N -0.671 5.671 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.109 3.891 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.350 0.650 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.071 0.929 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.752 8.668 -24.917 34.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.278 6.278 5 C -0.029 4.029 6 C 0.321 3.679 7 O -0.387 6.387 8 N -0.362 5.362 9 C -0.021 4.021 10 C -0.120 4.120 11 H 0.103 0.897 12 C -0.206 4.206 13 C -0.116 4.116 14 H 0.113 0.887 15 C -0.063 4.063 16 N -0.304 5.304 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.013 4.013 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.275 7.514 -23.494 33.914 hybrid contribution 1.441 1.066 -1.519 2.350 sum -21.834 8.580 -25.013 34.293 Atomic orbital electron populations 1.23852 0.95475 1.02390 0.99821 1.22712 0.95637 0.98169 1.00384 1.21626 0.88662 0.96364 0.92254 1.88061 1.44324 1.34835 1.60539 1.22139 0.93054 0.89282 0.98452 1.19797 0.81605 0.82821 0.83722 1.90783 1.71849 1.26218 1.49808 1.48923 1.31484 1.14389 1.41393 1.22579 1.02056 0.81634 0.95860 1.22098 0.99576 0.95348 0.94964 0.89749 1.21931 0.99281 0.97815 1.01556 1.22169 0.96880 0.93516 0.99058 0.88708 1.22165 0.92859 0.98658 0.92571 1.60087 1.17744 1.08572 1.44007 1.21694 0.89272 1.00039 0.97402 1.19723 0.82620 0.87410 0.86790 1.90578 1.61259 1.34077 1.58535 1.42206 1.12629 1.32862 1.35367 1.19445 0.97561 1.14813 1.11565 0.86278 1.25039 0.96615 0.97813 0.96691 1.69625 1.15459 1.39177 1.27887 0.86665 0.80741 0.82485 0.79433 1.19610 1.20216 1.19567 1.22508 0.88564 0.98100 0.92146 0.88407 0.87607 0.86315 0.92514 0.92057 0.90252 0.90264 0.90430 0.90567 0.91947 0.92536 0.91425 0.90177 0.95010 0.83008 0.89450 0.93813 0.79725 0.91633 0.91083 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 14.31 29.01 0.42 -0.59 16 2 C -0.15 -1.09 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.60 6.35 36.00 0.23 0.83 16 4 O -0.36 -3.87 9.86 -55.14 -0.54 -4.42 16 5 C 0.05 0.41 5.40 36.01 0.19 0.61 16 6 C 0.53 6.44 7.99 -10.98 -0.09 6.35 16 7 O -0.51 -8.89 16.77 -14.35 -0.24 -9.13 16 8 N -0.63 -6.12 3.32 -169.17 -0.56 -6.68 16 9 C 0.10 0.60 6.47 -2.41 -0.02 0.58 16 10 C -0.10 -0.62 3.66 -89.22 -0.33 -0.95 16 11 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 12 C -0.15 -0.75 7.94 37.16 0.29 -0.46 16 13 C -0.10 -0.89 3.30 -89.21 -0.29 -1.19 16 14 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.07 0.68 3.88 -3.82 -0.01 0.66 16 16 N -0.67 -9.96 6.13 -115.06 -0.71 -10.66 16 17 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 18 C 0.45 10.20 7.82 -10.99 -0.09 10.12 16 19 O -0.56 -15.31 15.78 5.55 0.09 -15.22 16 20 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 21 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.93 13.96 55.50 0.77 -25.16 16 25 Si 0.88 19.35 27.73 -169.99 -4.71 14.64 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 29 C 0.11 1.18 5.82 -2.31 -0.01 1.17 16 30 H 0.10 0.43 7.90 -52.48 -0.41 0.02 16 31 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.44 7.95 -51.93 -0.41 0.03 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.28 7.30 -51.93 -0.38 -0.10 16 38 H 0.08 0.38 7.83 -51.93 -0.41 -0.03 16 39 H 0.06 0.33 6.85 -51.93 -0.36 -0.03 16 40 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.37 6.71 -51.93 -0.35 0.02 16 42 H 0.08 0.75 6.58 -51.93 -0.34 0.41 16 43 H 0.03 0.29 6.89 -51.93 -0.36 -0.07 16 44 H 0.35 5.55 7.68 -39.29 -0.30 5.25 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 50 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -37.37 407.82 -8.29 -45.66 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -8.14 Total: 10.35 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.34 Total: 8.63 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.55 Total: -56.66 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.70 Total: -28.77 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.37 -8.29 -45.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569832773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.088 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds