Wall clock time and date at job start Tue Mar 31 2020 23:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49690 * 2 1 4 4 C 1.53049 * 109.49600 * 239.90985 * 2 1 3 5 5 C 1.53039 * 109.53493 * 178.68404 * 4 2 1 6 6 C 1.52756 * 109.38774 * 61.23812 * 5 4 2 7 7 N 1.46924 * 109.00752 * 305.58864 * 6 5 4 8 8 C 1.34780 * 120.63208 * 233.58410 * 7 6 5 9 9 O 1.21343 * 120.00581 * 184.24129 * 8 7 6 10 10 C 1.49458 * 119.99675 * 4.23588 * 8 7 6 11 11 O 1.21349 * 120.00158 * 353.58602 * 10 8 7 12 12 N 1.34774 * 119.99891 * 173.58362 * 10 8 7 13 13 C 1.46504 * 120.00175 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47210 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.70783 * 299.63196 * 14 13 12 16 16 C 1.52874 * 109.61741 * 179.33096 * 14 13 12 17 17 O 1.42966 * 109.29858 * 188.11616 * 16 14 13 18 18 C 1.42961 * 114.16571 * 62.44429 * 17 16 14 19 19 C 1.53289 * 109.22393 * 297.41967 * 18 17 16 20 20 N 1.47151 * 109.68169 * 60.16830 * 14 13 12 21 21 C 1.36938 * 120.98365 * 350.27807 * 20 14 13 22 22 H 1.07993 * 119.99498 * 34.86914 * 21 20 14 23 23 C 1.38809 * 120.00001 * 214.59188 * 21 20 14 24 24 N 1.31623 * 120.00350 * 355.65091 * 23 21 20 25 25 Si 1.86800 * 119.99858 * 175.64592 * 23 21 20 26 26 H 1.48506 * 109.46878 * 90.00124 * 25 23 21 27 27 H 1.48502 * 109.47282 * 209.99952 * 25 23 21 28 28 H 1.48501 * 109.47259 * 330.00382 * 25 23 21 29 29 C 1.46928 * 118.74036 * 53.30969 * 7 6 5 30 30 H 1.08998 * 109.47171 * 299.92630 * 1 2 3 31 31 H 1.09003 * 109.47450 * 59.92941 * 1 2 3 32 32 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.45666 * 298.70247 * 4 2 1 34 34 H 1.08996 * 109.46107 * 58.66044 * 4 2 1 35 35 H 1.08997 * 109.49626 * 181.32049 * 5 4 2 36 36 H 1.09005 * 109.49938 * 301.37601 * 5 4 2 37 37 H 1.08996 * 109.51148 * 185.70517 * 6 5 4 38 38 H 1.08999 * 109.42930 * 65.42311 * 6 5 4 39 39 H 0.96998 * 119.99871 * 0.02562 * 12 10 8 40 40 H 1.08994 * 109.46786 * 59.99737 * 13 12 10 41 41 H 1.09000 * 109.46814 * 300.00557 * 13 12 10 42 42 H 1.08999 * 109.58592 * 68.10221 * 16 14 13 43 43 H 1.09003 * 109.41130 * 308.01739 * 16 14 13 44 44 H 1.09002 * 109.51091 * 177.49679 * 18 17 16 45 45 H 1.09003 * 109.51547 * 57.35025 * 18 17 16 46 46 H 1.09002 * 109.68315 * 292.57872 * 19 18 17 47 47 H 1.09003 * 109.71340 * 172.04530 * 19 18 17 48 48 H 0.96991 * 120.00135 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.59074 * 66.43157 * 29 7 6 50 50 H 1.09007 * 109.58818 * 186.85675 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7233 -1.2483 5 6 3.5708 -0.6953 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 7 3.5046 -0.8289 1.1696 8 6 4.2812 -0.3851 2.1779 9 8 3.7723 0.0314 3.1976 10 6 5.7692 -0.4061 2.0399 11 8 6.2815 -0.9283 1.0717 12 7 6.5421 0.1550 2.9908 13 6 8.0007 0.1350 2.8553 14 6 8.6345 0.8323 4.0607 15 1 8.2956 1.8673 4.1066 16 6 10.1573 0.7986 3.9309 17 8 10.7455 1.2792 5.1421 18 6 10.4484 0.4843 6.2926 19 6 8.9365 0.5059 6.5443 20 7 8.2529 0.1305 5.2964 21 6 7.2939 -0.8470 5.2846 22 1 7.2018 -1.5026 4.4314 23 6 6.4441 -0.9989 6.3716 24 7 6.6144 -0.2611 7.4482 25 14 5.0587 -2.2502 6.3064 26 1 5.5459 -3.5553 6.8210 27 1 3.9265 -1.7793 7.1441 28 1 4.6025 -2.4109 4.9024 29 6 2.0413 -0.7236 1.2497 30 1 -0.3633 0.5127 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6966 -1.7575 -1.2350 34 1 1.6581 -0.2249 -2.1389 35 1 3.9334 -1.1900 -2.1669 36 1 3.9159 0.3387 -1.2548 37 1 5.1895 -1.3159 0.0101 38 1 3.8412 -2.4774 -0.0912 39 1 6.1326 0.5722 3.7648 40 1 8.2879 0.6552 1.9416 41 1 8.3472 -0.8975 2.8097 42 1 10.4673 1.4316 3.0995 43 1 10.4829 -0.2258 3.7497 44 1 10.9678 0.8912 7.1603 45 1 10.7743 -0.5415 6.1205 46 1 8.6286 1.5075 6.8446 47 1 8.6842 -0.2066 7.3297 48 1 6.0204 -0.3670 8.2076 49 1 1.6052 -1.7213 1.2984 50 1 1.7638 -0.1575 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570072212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:06 Heat of formation + Delta-G solvation = -71.952087 kcal Electronic energy + Delta-G solvation = -31704.888124 eV Core-core repulsion = 27540.691356 eV Total energy + Delta-G solvation = -4164.196768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68878 -38.98288 -38.24367 -37.49489 -35.56975 -34.00177 -33.36006 -31.90884 -31.61082 -30.44053 -27.52431 -27.16190 -26.39744 -25.37223 -23.45847 -22.85261 -22.33992 -21.52167 -20.32875 -19.80899 -19.36424 -17.47212 -16.72504 -16.53109 -16.07096 -15.76856 -15.41870 -15.24050 -15.11244 -14.60358 -14.52322 -14.34136 -14.22382 -13.90826 -13.78739 -13.60939 -13.32501 -13.04529 -12.90574 -12.73688 -12.63491 -12.24476 -11.94913 -11.89094 -11.58600 -11.37226 -11.17729 -10.99110 -10.98140 -10.88718 -10.75096 -10.54836 -10.42893 -10.38839 -10.16953 -10.12041 -9.69903 -9.06670 -8.78955 -8.70199 -8.55859 -8.40388 -6.68999 -5.91384 -3.45955 1.80507 2.64841 3.33686 3.43150 3.47000 3.58004 3.84555 4.36417 4.51181 4.53806 4.64625 4.74245 4.81179 4.98850 5.12851 5.22945 5.27962 5.33540 5.37558 5.47205 5.50259 5.57676 5.61688 5.67738 5.71261 5.80758 5.82842 5.89715 5.92398 5.97158 5.99744 6.01599 6.09260 6.14205 6.19550 6.25753 6.35998 6.48236 6.52055 6.69814 6.99868 7.12711 7.29306 7.57958 7.68207 7.74575 7.88431 8.16845 8.33300 8.47690 9.06824 9.64755 10.24458 11.13478 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003644 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.077720 B = 7682.611747 C = 8979.329839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.043 3.957 7 N -0.587 5.587 8 C 0.507 3.493 9 O -0.510 6.510 10 C 0.503 3.497 11 O -0.536 6.536 12 N -0.651 5.651 13 C 0.131 3.869 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.057 3.943 17 O -0.393 6.393 18 C 0.033 3.967 19 C 0.139 3.861 20 N -0.593 5.593 21 C -0.263 4.263 22 H 0.069 0.931 23 C 0.023 3.977 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.289 1.289 27 H -0.287 1.287 28 H -0.276 1.276 29 C 0.111 3.889 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.059 0.941 39 H 0.428 0.572 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.027 0.973 47 H 0.105 0.895 48 H 0.257 0.743 49 H 0.067 0.933 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 0.512 -14.494 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.169 4.169 6 C -0.078 4.078 7 N -0.321 5.321 8 C 0.289 3.711 9 O -0.385 6.385 10 C 0.284 3.716 11 O -0.418 6.418 12 N -0.302 5.302 13 C 0.008 3.992 14 C 0.016 3.984 15 H 0.061 0.939 16 C -0.022 4.022 17 O -0.311 6.311 18 C -0.045 4.045 19 C 0.014 3.986 20 N -0.319 5.319 21 C -0.392 4.392 22 H 0.087 0.913 23 C -0.178 4.178 24 N -0.538 5.538 25 Si 0.728 3.272 26 H -0.216 1.216 27 H -0.213 1.213 28 H -0.201 1.201 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.182 0.818 38 H 0.077 0.923 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.123 0.877 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.702 0.565 -14.364 15.125 hybrid contribution -1.369 -0.849 0.407 1.661 sum -6.071 -0.284 -13.957 15.223 Atomic orbital electron populations 1.21763 0.94420 1.02015 1.02016 1.21500 0.95847 1.00173 0.95021 0.90760 1.21630 0.95972 1.00574 0.97212 1.21815 0.95322 1.01502 0.98308 1.23319 1.06201 0.95926 0.82332 1.47901 1.06202 1.59688 1.18327 1.20209 0.88329 0.78927 0.83606 1.90789 1.74939 1.45098 1.27625 1.19976 0.87751 0.80345 0.83494 1.90154 1.74048 1.46954 1.30646 1.45969 1.07079 1.54107 1.23037 1.21371 0.78741 1.01795 0.97322 1.21371 0.93392 0.95677 0.87919 0.93933 1.22763 0.93558 0.98801 0.87101 1.87804 1.73048 1.53543 1.16729 1.23411 0.99969 0.93927 0.87174 1.21600 0.86243 1.00336 0.90393 1.44057 1.44114 1.41751 1.02011 1.19073 1.07701 1.08408 1.04042 0.91323 1.25236 0.97375 0.98059 0.97095 1.69888 1.38201 1.41055 1.04657 0.86352 0.82339 0.80396 0.78149 1.21636 1.21328 1.20089 1.21744 0.79400 1.00939 0.99025 0.92338 0.92355 0.92508 0.91901 0.91945 0.90814 0.91778 0.81827 0.92279 0.73136 0.91474 0.90739 0.89880 0.93527 0.90288 0.94178 0.95519 0.87725 0.93247 0.91428 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.11 -1.08 2.87 -90.50 -0.26 -1.34 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.12 -1.07 5.17 -26.69 -0.14 -1.21 16 5 C -0.13 -1.36 6.06 -26.84 -0.16 -1.52 16 6 C 0.04 0.56 6.24 -3.94 -0.02 0.54 16 7 N -0.59 -8.97 2.98 -173.54 -0.52 -9.49 16 8 C 0.51 9.46 7.76 -11.58 -0.09 9.37 16 9 O -0.51 -10.98 15.92 5.50 0.09 -10.89 16 10 C 0.50 9.40 7.81 -11.58 -0.09 9.31 16 11 O -0.54 -9.77 13.01 5.50 0.07 -9.70 16 12 N -0.65 -12.54 3.81 -60.73 -0.23 -12.77 16 13 C 0.13 2.31 4.45 -4.04 -0.02 2.30 16 14 C 0.12 2.37 3.20 -67.64 -0.22 2.15 16 15 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.06 0.98 6.27 37.09 0.23 1.21 16 17 O -0.39 -7.55 10.74 -35.23 -0.38 -7.93 16 18 C 0.03 0.64 6.98 37.31 0.26 0.90 16 19 C 0.14 3.19 5.39 -3.54 -0.02 3.17 16 20 N -0.59 -13.71 3.05 -164.55 -0.50 -14.21 16 21 C -0.26 -6.62 6.87 -15.06 -0.10 -6.72 16 22 H 0.07 1.75 5.99 -52.49 -0.31 1.43 16 23 C 0.02 0.61 5.33 -17.43 -0.09 0.52 16 24 N -0.90 -24.65 10.67 55.49 0.59 -24.05 16 25 Si 0.90 22.10 29.56 -169.99 -5.02 17.07 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.11 1.44 5.71 -3.71 -0.02 1.42 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.17 2.46 3.71 -57.17 -0.21 2.25 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.43 9.19 6.77 -40.82 -0.28 8.92 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.39 7.57 -51.93 -0.39 0.99 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 2.65 6.11 -51.93 -0.32 2.34 16 48 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -29.18 384.27 -8.71 -37.89 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.20 Total: 9.03 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -0.40 Total: 19.25 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.66 Total: -60.52 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.22 Total: -28.52 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.18 -8.71 -37.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570072212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.063 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds