Wall clock time and date at job start Tue Mar 31 2020 23:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49690 * 2 1 4 4 C 1.53049 * 109.49600 * 239.90985 * 2 1 3 5 5 C 1.53039 * 109.53493 * 178.68404 * 4 2 1 6 6 C 1.52756 * 109.38774 * 61.23812 * 5 4 2 7 7 N 1.46924 * 109.00752 * 305.58864 * 6 5 4 8 8 C 1.34780 * 120.63208 * 233.58410 * 7 6 5 9 9 O 1.21343 * 120.00581 * 184.24129 * 8 7 6 10 10 C 1.49458 * 119.99675 * 4.23588 * 8 7 6 11 11 O 1.21349 * 120.00158 * 353.58602 * 10 8 7 12 12 N 1.34774 * 119.99891 * 173.58362 * 10 8 7 13 13 C 1.46504 * 120.00175 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47210 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.70783 * 299.63196 * 14 13 12 16 16 C 1.52874 * 109.61741 * 179.33096 * 14 13 12 17 17 O 1.42966 * 109.29858 * 188.11616 * 16 14 13 18 18 C 1.42961 * 114.16571 * 62.44429 * 17 16 14 19 19 C 1.53289 * 109.22393 * 297.41967 * 18 17 16 20 20 N 1.47151 * 109.68169 * 60.16830 * 14 13 12 21 21 C 1.36938 * 120.98365 * 350.27807 * 20 14 13 22 22 H 1.07993 * 119.99498 * 34.86914 * 21 20 14 23 23 C 1.38809 * 120.00001 * 214.59188 * 21 20 14 24 24 N 1.31623 * 120.00350 * 355.65091 * 23 21 20 25 25 Si 1.86800 * 119.99858 * 175.64592 * 23 21 20 26 26 H 1.48506 * 109.46878 * 90.00124 * 25 23 21 27 27 H 1.48502 * 109.47282 * 209.99952 * 25 23 21 28 28 H 1.48501 * 109.47259 * 330.00382 * 25 23 21 29 29 C 1.46928 * 118.74036 * 53.30969 * 7 6 5 30 30 H 1.08998 * 109.47171 * 299.92630 * 1 2 3 31 31 H 1.09003 * 109.47450 * 59.92941 * 1 2 3 32 32 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.45666 * 298.70247 * 4 2 1 34 34 H 1.08996 * 109.46107 * 58.66044 * 4 2 1 35 35 H 1.08997 * 109.49626 * 181.32049 * 5 4 2 36 36 H 1.09005 * 109.49938 * 301.37601 * 5 4 2 37 37 H 1.08996 * 109.51148 * 185.70517 * 6 5 4 38 38 H 1.08999 * 109.42930 * 65.42311 * 6 5 4 39 39 H 0.96998 * 119.99871 * 0.02562 * 12 10 8 40 40 H 1.08994 * 109.46786 * 59.99737 * 13 12 10 41 41 H 1.09000 * 109.46814 * 300.00557 * 13 12 10 42 42 H 1.08999 * 109.58592 * 68.10221 * 16 14 13 43 43 H 1.09003 * 109.41130 * 308.01739 * 16 14 13 44 44 H 1.09002 * 109.51091 * 177.49679 * 18 17 16 45 45 H 1.09003 * 109.51547 * 57.35025 * 18 17 16 46 46 H 1.09002 * 109.68315 * 292.57872 * 19 18 17 47 47 H 1.09003 * 109.71340 * 172.04530 * 19 18 17 48 48 H 0.96991 * 120.00135 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.59074 * 66.43157 * 29 7 6 50 50 H 1.09007 * 109.58818 * 186.85675 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7233 -1.2483 5 6 3.5708 -0.6953 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 7 3.5046 -0.8289 1.1696 8 6 4.2812 -0.3851 2.1779 9 8 3.7723 0.0314 3.1976 10 6 5.7692 -0.4061 2.0399 11 8 6.2815 -0.9283 1.0717 12 7 6.5421 0.1550 2.9908 13 6 8.0007 0.1350 2.8553 14 6 8.6345 0.8323 4.0607 15 1 8.2956 1.8673 4.1066 16 6 10.1573 0.7986 3.9309 17 8 10.7455 1.2792 5.1421 18 6 10.4484 0.4843 6.2926 19 6 8.9365 0.5059 6.5443 20 7 8.2529 0.1305 5.2964 21 6 7.2939 -0.8470 5.2846 22 1 7.2018 -1.5026 4.4314 23 6 6.4441 -0.9989 6.3716 24 7 6.6144 -0.2611 7.4482 25 14 5.0587 -2.2502 6.3064 26 1 5.5459 -3.5553 6.8210 27 1 3.9265 -1.7793 7.1441 28 1 4.6025 -2.4109 4.9024 29 6 2.0413 -0.7236 1.2497 30 1 -0.3633 0.5127 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6966 -1.7575 -1.2350 34 1 1.6581 -0.2249 -2.1389 35 1 3.9334 -1.1900 -2.1669 36 1 3.9159 0.3387 -1.2548 37 1 5.1895 -1.3159 0.0101 38 1 3.8412 -2.4774 -0.0912 39 1 6.1326 0.5722 3.7648 40 1 8.2879 0.6552 1.9416 41 1 8.3472 -0.8975 2.8097 42 1 10.4673 1.4316 3.0995 43 1 10.4829 -0.2258 3.7497 44 1 10.9678 0.8912 7.1603 45 1 10.7743 -0.5415 6.1205 46 1 8.6286 1.5075 6.8446 47 1 8.6842 -0.2066 7.3297 48 1 6.0204 -0.3670 8.2076 49 1 1.6052 -1.7213 1.2984 50 1 1.7638 -0.1575 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570072212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:05 Heat of formation + Delta-G solvation = -91.283422 kcal Electronic energy + Delta-G solvation = -31705.726394 eV Core-core repulsion = 27540.691356 eV Total energy + Delta-G solvation = -4165.035037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05438 -40.42289 -39.65300 -38.79139 -37.09848 -35.56077 -34.62885 -33.32461 -32.84585 -32.15506 -29.12710 -28.48362 -27.52956 -26.62391 -25.25501 -24.22614 -23.28066 -22.99572 -21.61735 -21.29394 -20.61495 -18.98135 -18.18960 -18.13672 -17.68866 -17.21117 -16.88893 -16.51038 -16.28996 -16.23833 -15.96541 -15.75173 -15.34436 -15.28833 -15.16306 -15.02709 -14.74739 -14.44820 -14.32167 -14.05950 -13.63826 -13.55728 -13.16205 -13.14145 -12.89374 -12.81604 -12.75140 -12.55395 -12.41831 -12.15907 -12.03758 -11.98960 -11.92490 -11.83259 -11.64233 -11.35135 -11.32342 -10.67782 -10.59221 -10.10201 -10.01008 -9.79271 -8.59003 -7.92989 -5.46476 0.34049 1.31824 1.33543 1.41208 1.45679 2.11977 2.38463 2.52407 3.05282 3.23564 3.32030 3.47132 3.73184 3.80923 3.92035 3.97816 4.10605 4.21215 4.29281 4.33320 4.40057 4.49463 4.55018 4.58292 4.62540 4.64746 4.68385 4.74082 4.76352 4.83559 4.87236 4.91551 5.03461 5.05272 5.12734 5.14911 5.19455 5.28009 5.33795 5.35700 5.45844 5.60754 5.65282 5.71931 5.98608 6.27383 6.30802 6.41566 6.72049 6.97235 7.09427 7.73110 8.29174 9.09806 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003644 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.077720 B = 7682.611747 C = 8979.329839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.126 4.126 6 C 0.038 3.962 7 N -0.578 5.578 8 C 0.496 3.504 9 O -0.552 6.552 10 C 0.503 3.497 11 O -0.532 6.532 12 N -0.661 5.661 13 C 0.136 3.864 14 C 0.122 3.878 15 H 0.037 0.963 16 C 0.059 3.941 17 O -0.398 6.398 18 C 0.047 3.953 19 C 0.143 3.857 20 N -0.609 5.609 21 C -0.241 4.241 22 H 0.068 0.932 23 C -0.021 4.021 24 N -0.921 5.921 25 Si 0.940 3.060 26 H -0.285 1.285 27 H -0.300 1.300 28 H -0.284 1.284 29 C 0.104 3.896 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.149 0.851 38 H 0.071 0.929 39 H 0.416 0.584 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.053 0.947 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.002 0.998 47 H 0.077 0.923 48 H 0.250 0.750 49 H 0.081 0.919 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 0.123 -17.584 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.164 4.164 6 C -0.082 4.082 7 N -0.311 5.311 8 C 0.279 3.721 9 O -0.430 6.430 10 C 0.285 3.715 11 O -0.413 6.413 12 N -0.311 5.311 13 C 0.013 3.987 14 C 0.016 3.984 15 H 0.054 0.946 16 C -0.020 4.020 17 O -0.317 6.317 18 C -0.031 4.031 19 C 0.018 3.982 20 N -0.335 5.335 21 C -0.371 4.371 22 H 0.085 0.915 23 C -0.219 4.219 24 N -0.567 5.567 25 Si 0.771 3.229 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.210 1.210 29 C -0.018 4.018 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.140 0.860 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.374 0.148 -17.537 18.074 hybrid contribution -1.472 -0.728 1.233 2.054 sum -5.847 -0.580 -16.304 17.330 Atomic orbital electron populations 1.21738 0.92650 1.02805 1.02578 1.21469 0.97217 0.99199 0.94064 0.91898 1.21628 0.94870 1.01240 0.97185 1.21790 0.96282 1.00792 0.97501 1.23384 1.05259 0.96938 0.82593 1.48118 1.07126 1.57885 1.17944 1.20336 0.88599 0.79241 0.83939 1.90766 1.75449 1.47477 1.29289 1.20033 0.87900 0.80162 0.83426 1.90194 1.74260 1.46583 1.30300 1.46041 1.07803 1.54430 1.22795 1.21432 0.77777 1.01537 0.97922 1.21551 0.95277 0.94915 0.86665 0.94550 1.22917 0.91390 1.00244 0.87410 1.87807 1.72944 1.53759 1.17151 1.23221 0.96961 0.94571 0.88358 1.21397 0.88986 0.97940 0.89872 1.44272 1.43955 1.41799 1.03467 1.19127 1.06919 1.08041 1.02967 0.91488 1.25653 0.99018 0.99612 0.97582 1.70010 1.38872 1.42734 1.05039 0.85692 0.80712 0.79470 0.77065 1.21158 1.22638 1.20991 1.21981 0.78023 1.01820 0.99934 0.92889 0.90738 0.91595 0.90904 0.89855 0.88524 0.92597 0.83477 0.91062 0.74607 0.88159 0.91521 0.85983 0.92886 0.87997 0.93743 0.98030 0.90520 0.94025 0.90103 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 2 C -0.10 -1.86 2.87 -10.71 -0.03 -1.89 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.68 5.17 30.62 0.16 -1.53 16 5 C -0.13 -2.25 6.06 30.53 0.19 -2.07 16 6 C 0.04 0.94 6.24 86.22 0.54 1.47 16 7 N -0.58 -17.41 2.98 -821.32 -2.45 -19.86 16 8 C 0.50 18.85 7.76 87.27 0.68 19.53 16 9 O -0.55 -24.71 15.92 -3.23 -0.05 -24.76 16 10 C 0.50 18.78 7.81 87.27 0.68 19.46 16 11 O -0.53 -18.86 13.01 -3.24 -0.04 -18.90 16 12 N -0.66 -25.50 3.81 -464.42 -1.77 -27.27 16 13 C 0.14 4.60 4.45 86.38 0.38 4.99 16 14 C 0.12 4.53 3.20 44.82 0.14 4.68 16 15 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 16 C 0.06 1.85 6.27 71.94 0.45 2.30 16 17 O -0.40 -14.34 10.74 -148.98 -1.60 -15.94 16 18 C 0.05 1.74 6.98 72.08 0.50 2.24 16 19 C 0.14 6.65 5.39 86.35 0.47 7.12 16 20 N -0.61 -28.22 3.05 -674.53 -2.06 -30.27 16 21 C -0.24 -12.25 6.87 84.03 0.58 -11.67 16 22 H 0.07 3.43 5.99 -2.91 -0.02 3.41 16 23 C -0.02 -1.16 5.33 84.86 0.45 -0.71 16 24 N -0.92 -52.59 10.67 21.65 0.23 -52.36 16 25 Si 0.94 46.85 29.56 68.60 2.03 48.88 16 26 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 27 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 28 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 29 C 0.10 2.64 5.71 86.36 0.49 3.13 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.15 4.22 3.71 -85.39 -0.32 3.91 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.42 18.35 6.77 -92.71 -0.63 17.72 16 40 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 2.37 7.57 -2.39 -0.02 2.36 16 42 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 44 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.08 4.00 6.11 -2.39 -0.01 3.99 16 48 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.07 2.13 7.03 -2.38 -0.02 2.12 16 Total: -1.00 -64.97 384.27 0.64 -64.33 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.01 Total: 30.44 kcal Atomic # 6 Polarization: 39.38 SS G_CDS: 6.34 Total: 45.72 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -6.05 Total: -129.77 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.69 Total: -59.61 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -64.97 0.64 -64.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570072212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.950 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds