Wall clock time and date at job start Tue Mar 31 2020 23:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 6 6 N 1.46904 * 110.85252 * 100.20109 * 4 2 1 7 7 C 1.46895 * 110.99960 * 200.14664 * 6 4 2 8 8 C 1.50699 * 109.46965 * 179.97438 * 7 6 4 9 9 O 1.21291 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00103 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00376 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00146 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99646 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00378 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47336 * 89.99758 * 15 13 11 17 17 H 1.48494 * 109.47311 * 210.00254 * 15 13 11 18 18 H 1.48502 * 109.46756 * 329.99957 * 15 13 11 19 19 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 20 20 C 1.54918 * 101.58012 * 35.30827 * 19 4 2 21 21 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 22 22 C 1.34780 * 125.64445 * 298.39549 * 21 2 1 23 23 O 1.21280 * 120.00423 * 359.71250 * 22 21 2 24 24 C 1.50701 * 119.99795 * 179.71926 * 22 21 2 25 25 C 1.52997 * 109.47212 * 179.97438 * 24 22 21 26 26 O 1.42903 * 112.85050 * 53.80347 * 25 24 22 27 27 C 1.53784 * 113.61716 * 282.49897 * 25 24 22 28 28 C 1.53782 * 87.08225 * 220.01852 * 27 25 24 29 29 C 1.53778 * 87.08131 * 25.42819 * 28 27 25 30 30 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 31 31 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 32 32 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 33 33 H 1.00901 * 110.99692 * 324.09621 * 6 4 2 34 34 H 1.09002 * 109.47346 * 299.99740 * 7 6 4 35 35 H 1.08997 * 109.47365 * 60.00004 * 7 6 4 36 36 H 0.96995 * 120.00488 * 0.02562 * 10 8 7 37 37 H 0.97003 * 119.99473 * 179.97438 * 14 13 11 38 38 H 1.08998 * 111.00676 * 277.23890 * 19 4 2 39 39 H 1.09003 * 111.04375 * 153.39206 * 19 4 2 40 40 H 1.09003 * 110.36670 * 204.15269 * 20 19 4 41 41 H 1.08999 * 110.36757 * 81.82932 * 20 19 4 42 42 H 1.09002 * 109.47060 * 299.99722 * 24 22 21 43 43 H 1.09001 * 109.47380 * 59.99809 * 24 22 21 44 44 H 0.96705 * 113.99923 * 309.66161 * 26 25 24 45 45 H 1.09002 * 113.61067 * 334.56569 * 27 25 24 46 46 H 1.08997 * 113.61870 * 105.46505 * 27 25 24 47 47 H 1.08997 * 113.61130 * 270.87983 * 28 27 25 48 48 H 1.08999 * 113.61313 * 139.98073 * 28 27 25 49 49 H 1.08994 * 113.61671 * 220.01906 * 29 28 27 50 50 H 1.09004 * 113.69260 * 89.13079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3066 -1.4406 -1.6225 6 7 2.4648 0.1992 -2.2891 7 6 2.5089 -0.4554 -3.6034 8 6 2.9289 0.5451 -4.6491 9 8 3.1675 1.6909 -4.3309 10 7 3.0394 0.1667 -5.9380 11 6 3.4210 1.0771 -6.8894 12 1 3.6335 2.0974 -6.6061 13 6 3.5344 0.6871 -8.2182 14 7 3.2763 -0.5545 -8.5629 15 14 4.0550 1.9273 -9.5145 16 1 5.5342 1.9167 -9.6439 17 1 3.4414 1.5680 -10.8181 18 1 3.6031 3.2834 -9.1118 19 6 3.2863 -1.5184 -0.6914 20 6 2.8098 -1.8825 0.7370 21 7 2.0300 -0.7141 1.1839 22 6 1.8073 -0.3619 2.4657 23 8 1.1474 0.6239 2.7180 24 6 2.3783 -1.1932 3.5856 25 6 1.9813 -0.5797 4.9297 26 8 0.5713 -0.3845 5.0558 27 6 2.8128 0.6560 5.3125 28 6 2.8126 0.1130 6.7513 29 6 2.6162 -1.2844 6.1402 30 1 -0.3634 0.5195 0.8867 31 1 -0.3634 0.5082 -0.8933 32 1 -0.3634 -1.0276 0.0064 33 1 1.8556 1.0034 -2.3060 34 1 3.2257 -1.2762 -3.5767 35 1 1.5207 -0.8441 -3.8491 36 1 2.8482 -0.7495 -6.1926 37 1 3.3551 -0.8266 -9.4906 38 1 4.1669 -0.8769 -0.6578 39 1 3.4813 -2.4157 -1.2787 40 1 3.6655 -2.0412 1.3934 41 1 2.1800 -2.7718 0.7117 42 1 1.9877 -2.2087 3.5198 43 1 3.4650 -1.2158 3.5037 44 1 0.1700 0.0792 4.3081 45 1 3.8012 0.6764 4.8536 46 1 2.2737 1.5968 5.2008 47 1 1.9647 0.4526 7.3460 48 1 3.7667 0.2352 7.2641 49 1 1.9185 -1.9102 6.6966 50 1 3.5502 -1.7958 5.9072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571455592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:11 Heat of formation + Delta-G solvation = -96.446236 kcal Electronic energy + Delta-G solvation = -29724.218274 eV Core-core repulsion = 25558.959360 eV Total energy + Delta-G solvation = -4165.258914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96117 -39.65711 -38.37197 -37.64806 -34.92034 -34.60961 -33.84324 -32.05263 -31.30023 -31.14017 -29.73781 -27.02219 -26.04432 -25.11753 -24.21019 -23.69507 -22.63486 -20.69952 -19.91142 -19.56207 -19.03343 -17.92085 -17.45061 -16.84729 -16.58837 -16.19451 -15.82486 -15.45315 -15.34395 -15.08957 -14.74447 -14.53129 -14.13825 -13.94073 -13.82196 -13.53349 -13.47158 -13.13608 -13.10102 -12.92552 -12.61205 -12.43035 -12.24989 -11.89707 -11.88712 -11.80611 -11.59453 -11.49600 -11.45823 -11.18118 -11.15186 -11.03349 -10.80517 -10.72376 -10.41869 -10.25072 -9.93607 -9.92214 -9.54475 -8.96033 -8.53406 -8.19423 -8.00108 -6.45253 -3.86114 2.28830 2.58729 3.15654 3.24656 3.30459 3.79765 3.86022 3.95346 4.01300 4.23553 4.24023 4.32174 4.33621 4.40651 4.52793 4.72698 4.88544 4.88855 4.95773 5.03859 5.08112 5.15103 5.18163 5.23950 5.27016 5.30769 5.33347 5.38279 5.44139 5.50316 5.60557 5.69190 5.75863 5.79865 5.85218 5.90625 5.92724 5.98399 6.04038 6.06196 6.11985 6.23030 7.10214 7.17211 7.50591 7.52149 7.53757 7.88645 8.02466 8.57108 9.14349 9.50075 10.01269 10.72354 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.001777 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.760600 B =15749.767723 C =15815.817147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.089 0.911 4 C 0.078 3.922 5 H 0.061 0.939 6 N -0.656 5.656 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.125 4.125 20 C 0.097 3.903 21 N -0.608 5.608 22 C 0.534 3.466 23 O -0.542 6.542 24 C -0.159 4.159 25 C 0.128 3.872 26 O -0.549 6.549 27 C -0.162 4.162 28 C -0.135 4.135 29 C -0.128 4.128 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.353 0.647 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.390 0.610 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -8.387 24.611 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.107 0.893 4 C -0.033 4.033 5 H 0.078 0.922 6 N -0.290 5.290 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.164 4.164 20 C -0.026 4.026 21 N -0.341 5.341 22 C 0.323 3.677 23 O -0.422 6.422 24 C -0.199 4.199 25 C 0.086 3.914 26 O -0.361 6.361 27 C -0.199 4.199 28 C -0.172 4.172 29 C -0.165 4.165 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.244 0.756 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.524 -7.525 25.482 26.614 hybrid contribution -0.775 -0.018 -1.838 1.995 sum -2.299 -7.543 23.644 24.925 Atomic orbital electron populations 1.22163 0.94476 1.02213 1.03329 1.21670 0.94291 0.97274 0.83761 0.89302 1.22614 0.95684 0.93982 0.91054 0.92167 1.60152 1.57476 1.08419 1.02928 1.21710 1.00334 0.97179 0.88866 1.19768 0.85144 0.89206 0.83381 1.90535 1.55218 1.20190 1.80734 1.41856 1.59701 1.12910 1.05460 1.19707 1.42362 0.94171 0.86701 0.87897 1.25267 0.97485 0.96917 0.98254 1.69613 1.49138 1.16377 1.19137 0.85848 0.78687 0.80341 0.79370 1.20376 1.20925 1.19416 1.22890 0.99013 1.00926 0.93524 1.22438 0.95220 0.88394 0.96543 1.48524 1.52349 1.28292 1.04974 1.20308 0.80136 0.84992 0.82236 1.90550 1.41009 1.27775 1.82829 1.22347 1.03161 1.00870 0.93512 1.21807 0.82581 0.95579 0.91422 1.86334 1.18741 1.80991 1.50040 1.23577 1.00483 0.99208 0.96678 1.22741 1.02010 0.95986 0.96510 1.23056 1.00358 0.97349 0.95758 0.90955 0.91448 0.92589 0.82677 0.89495 0.93689 0.77464 0.91857 0.89112 0.89772 0.90306 0.91087 0.88147 0.87765 0.75554 0.89814 0.90517 0.89825 0.91373 0.90502 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.11 37.16 0.34 -1.40 16 2 C 0.13 1.49 2.99 -66.95 -0.20 1.29 16 3 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 4 C 0.08 0.86 2.77 -65.87 -0.18 0.68 16 5 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 6 N -0.66 -9.82 5.93 -106.05 -0.63 -10.45 16 7 C 0.05 0.85 6.02 -4.98 -0.03 0.82 16 8 C 0.44 10.06 7.82 -10.99 -0.09 9.97 16 9 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 10 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 15 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.12 -1.15 6.71 -24.58 -0.17 -1.32 16 20 C 0.10 0.71 6.69 -2.53 -0.02 0.69 16 21 N -0.61 -5.93 3.06 -163.01 -0.50 -6.43 16 22 C 0.53 5.53 7.40 -10.98 -0.08 5.45 16 23 O -0.54 -7.10 12.64 -14.26 -0.18 -7.28 16 24 C -0.16 -1.18 4.35 -27.88 -0.12 -1.30 16 25 C 0.13 1.14 1.10 -89.81 -0.10 1.04 16 26 O -0.55 -6.22 13.39 -55.05 -0.74 -6.96 16 27 C -0.16 -1.43 7.17 -25.92 -0.19 -1.61 16 28 C -0.14 -1.02 8.02 -25.92 -0.21 -1.23 16 29 C -0.13 -0.90 7.47 -25.92 -0.19 -1.09 16 30 H 0.07 0.85 6.89 -51.93 -0.36 0.50 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.35 5.60 8.15 -39.29 -0.32 5.28 16 34 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.43 7.48 -51.93 -0.39 0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.58 7.76 -51.93 -0.40 0.18 16 44 H 0.39 4.49 6.19 45.56 0.28 4.77 16 45 H 0.08 0.65 8.03 -51.93 -0.42 0.24 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -32.30 401.98 -9.46 -41.76 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -7.74 Total: 16.22 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.47 Total: 4.08 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.46 Total: -54.25 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.83 Total: -29.68 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.30 -9.46 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571455592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.682 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds