Wall clock time and date at job start Tue Mar 31 2020 23:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 6 6 N 1.46904 * 110.85252 * 100.20109 * 4 2 1 7 7 C 1.46895 * 110.99960 * 200.14664 * 6 4 2 8 8 C 1.50699 * 109.46965 * 179.97438 * 7 6 4 9 9 O 1.21291 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00103 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00376 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00146 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99646 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00378 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47336 * 89.99758 * 15 13 11 17 17 H 1.48494 * 109.47311 * 210.00254 * 15 13 11 18 18 H 1.48502 * 109.46756 * 329.99957 * 15 13 11 19 19 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 20 20 C 1.54918 * 101.58012 * 35.30827 * 19 4 2 21 21 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 22 22 C 1.34780 * 125.64445 * 298.39549 * 21 2 1 23 23 O 1.21280 * 120.00423 * 359.71250 * 22 21 2 24 24 C 1.50701 * 119.99795 * 179.71926 * 22 21 2 25 25 C 1.52997 * 109.47212 * 179.97438 * 24 22 21 26 26 O 1.42903 * 112.85050 * 53.80347 * 25 24 22 27 27 C 1.53784 * 113.61716 * 282.49897 * 25 24 22 28 28 C 1.53782 * 87.08225 * 220.01852 * 27 25 24 29 29 C 1.53778 * 87.08131 * 25.42819 * 28 27 25 30 30 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 31 31 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 32 32 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 33 33 H 1.00901 * 110.99692 * 324.09621 * 6 4 2 34 34 H 1.09002 * 109.47346 * 299.99740 * 7 6 4 35 35 H 1.08997 * 109.47365 * 60.00004 * 7 6 4 36 36 H 0.96995 * 120.00488 * 0.02562 * 10 8 7 37 37 H 0.97003 * 119.99473 * 179.97438 * 14 13 11 38 38 H 1.08998 * 111.00676 * 277.23890 * 19 4 2 39 39 H 1.09003 * 111.04375 * 153.39206 * 19 4 2 40 40 H 1.09003 * 110.36670 * 204.15269 * 20 19 4 41 41 H 1.08999 * 110.36757 * 81.82932 * 20 19 4 42 42 H 1.09002 * 109.47060 * 299.99722 * 24 22 21 43 43 H 1.09001 * 109.47380 * 59.99809 * 24 22 21 44 44 H 0.96705 * 113.99923 * 309.66161 * 26 25 24 45 45 H 1.09002 * 113.61067 * 334.56569 * 27 25 24 46 46 H 1.08997 * 113.61870 * 105.46505 * 27 25 24 47 47 H 1.08997 * 113.61130 * 270.87983 * 28 27 25 48 48 H 1.08999 * 113.61313 * 139.98073 * 28 27 25 49 49 H 1.08994 * 113.61671 * 220.01906 * 29 28 27 50 50 H 1.09004 * 113.69260 * 89.13079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3066 -1.4406 -1.6225 6 7 2.4648 0.1992 -2.2891 7 6 2.5089 -0.4554 -3.6034 8 6 2.9289 0.5451 -4.6491 9 8 3.1675 1.6909 -4.3309 10 7 3.0394 0.1667 -5.9380 11 6 3.4210 1.0771 -6.8894 12 1 3.6335 2.0974 -6.6061 13 6 3.5344 0.6871 -8.2182 14 7 3.2763 -0.5545 -8.5629 15 14 4.0550 1.9273 -9.5145 16 1 5.5342 1.9167 -9.6439 17 1 3.4414 1.5680 -10.8181 18 1 3.6031 3.2834 -9.1118 19 6 3.2863 -1.5184 -0.6914 20 6 2.8098 -1.8825 0.7370 21 7 2.0300 -0.7141 1.1839 22 6 1.8073 -0.3619 2.4657 23 8 1.1474 0.6239 2.7180 24 6 2.3783 -1.1932 3.5856 25 6 1.9813 -0.5797 4.9297 26 8 0.5713 -0.3845 5.0558 27 6 2.8128 0.6560 5.3125 28 6 2.8126 0.1130 6.7513 29 6 2.6162 -1.2844 6.1402 30 1 -0.3634 0.5195 0.8867 31 1 -0.3634 0.5082 -0.8933 32 1 -0.3634 -1.0276 0.0064 33 1 1.8556 1.0034 -2.3060 34 1 3.2257 -1.2762 -3.5767 35 1 1.5207 -0.8441 -3.8491 36 1 2.8482 -0.7495 -6.1926 37 1 3.3551 -0.8266 -9.4906 38 1 4.1669 -0.8769 -0.6578 39 1 3.4813 -2.4157 -1.2787 40 1 3.6655 -2.0412 1.3934 41 1 2.1800 -2.7718 0.7117 42 1 1.9877 -2.2087 3.5198 43 1 3.4650 -1.2158 3.5037 44 1 0.1700 0.0792 4.3081 45 1 3.8012 0.6764 4.8536 46 1 2.2737 1.5968 5.2008 47 1 1.9647 0.4526 7.3460 48 1 3.7667 0.2352 7.2641 49 1 1.9185 -1.9102 6.6966 50 1 3.5502 -1.7958 5.9072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571455592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:10 Heat of formation + Delta-G solvation = -120.512753 kcal Electronic energy + Delta-G solvation = -29725.261876 eV Core-core repulsion = 25558.959360 eV Total energy + Delta-G solvation = -4166.302516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71185 -40.48681 -39.98155 -38.61550 -36.22574 -35.62547 -35.37135 -33.29293 -32.85476 -31.98399 -30.52627 -28.39747 -26.64769 -26.51014 -25.20640 -24.71779 -23.38451 -21.56018 -21.14328 -20.56543 -20.10569 -19.79828 -18.26365 -17.80997 -17.58348 -17.22727 -16.86381 -16.59750 -16.40642 -16.20000 -15.91330 -15.67234 -15.52091 -15.24679 -14.73517 -14.54746 -14.38863 -14.27669 -13.90463 -13.80172 -13.71211 -13.48843 -13.26700 -13.13819 -13.08842 -12.84782 -12.71623 -12.53702 -12.42176 -12.36570 -12.14573 -12.12564 -11.94736 -11.77300 -11.66366 -11.50987 -11.38958 -10.70343 -10.61304 -10.35051 -10.01423 -9.72910 -9.39636 -8.46960 -5.95346 1.37801 1.42036 1.53791 1.54236 1.83829 2.05552 2.29299 2.90316 3.14817 3.20511 3.25143 3.49235 3.57482 3.62749 3.68452 3.72071 3.92011 4.02807 4.12178 4.25087 4.27461 4.32476 4.37336 4.40449 4.48732 4.50965 4.56822 4.60116 4.68281 4.74385 4.78484 4.81002 4.85316 4.96724 5.04798 5.05468 5.13376 5.16162 5.24654 5.31674 5.33244 5.41229 5.44897 5.88679 6.09662 6.28233 6.45820 6.60271 6.73178 7.12119 7.12927 7.56528 8.12205 8.70203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.001777 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.760600 B =15749.767723 C =15815.817147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.057 0.943 4 C 0.080 3.920 5 H 0.078 0.922 6 N -0.672 5.672 7 C 0.069 3.931 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.918 5.918 15 Si 0.991 3.009 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.275 1.275 19 C -0.123 4.123 20 C 0.099 3.901 21 N -0.608 5.608 22 C 0.525 3.475 23 O -0.579 6.579 24 C -0.148 4.148 25 C 0.113 3.887 26 O -0.567 6.567 27 C -0.168 4.168 28 C -0.135 4.135 29 C -0.116 4.116 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.343 0.657 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.385 0.615 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -11.150 25.081 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.075 0.925 4 C -0.030 4.030 5 H 0.096 0.904 6 N -0.305 5.305 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.513 6.513 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.815 3.185 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.200 1.200 19 C -0.162 4.162 20 C -0.023 4.023 21 N -0.341 5.341 22 C 0.316 3.684 23 O -0.461 6.461 24 C -0.188 4.188 25 C 0.072 3.928 26 O -0.379 6.379 27 C -0.205 4.205 28 C -0.173 4.173 29 C -0.154 4.154 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.239 0.761 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.578 -10.349 25.964 27.957 hybrid contribution -1.076 0.891 -1.927 2.380 sum -1.654 -9.458 24.038 25.884 Atomic orbital electron populations 1.22075 0.94195 1.02732 1.02398 1.21490 0.94470 0.96060 0.84887 0.92487 1.22686 0.97243 0.93402 0.89656 0.90439 1.60168 1.58113 1.09128 1.03064 1.21560 1.01946 0.95424 0.87426 1.20921 0.83091 0.89783 0.83814 1.90505 1.56613 1.22640 1.81492 1.41912 1.60302 1.12749 1.05954 1.19643 1.44611 0.93920 0.88229 0.90500 1.26001 0.96926 0.98733 0.99475 1.69664 1.48996 1.17339 1.19888 0.84953 0.78554 0.77815 0.77174 1.19660 1.19494 1.19985 1.22899 0.97206 1.00932 0.95120 1.22651 0.96249 0.87866 0.95514 1.48608 1.52332 1.28818 1.04376 1.20939 0.79680 0.84842 0.82904 1.90543 1.42643 1.29533 1.83367 1.22359 1.04552 1.00886 0.90993 1.22120 0.81386 0.96075 0.93261 1.86313 1.20499 1.80962 1.50105 1.23626 1.00788 0.98107 0.98019 1.22735 1.02327 0.96498 0.95722 1.23102 1.01260 0.96769 0.94221 0.92680 0.91630 0.91193 0.83788 0.87142 0.91246 0.76851 0.91287 0.91069 0.87817 0.87684 0.88662 0.86013 0.85118 0.76128 0.88555 0.93346 0.91318 0.89653 0.90811 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.11 71.98 0.66 -2.62 16 2 C 0.14 2.96 2.99 45.34 0.14 3.10 16 3 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 4 C 0.08 1.63 2.77 46.10 0.13 1.76 16 5 H 0.08 1.36 7.60 -2.39 -0.02 1.34 16 6 N -0.67 -19.70 5.93 -489.45 -2.90 -22.60 16 7 C 0.07 2.15 6.02 85.56 0.52 2.67 16 8 C 0.44 20.13 7.82 87.66 0.69 20.82 16 9 O -0.63 -34.38 15.78 -3.06 -0.05 -34.43 16 10 N -0.57 -28.60 5.29 -306.99 -1.62 -30.22 16 11 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 12 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 14 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 15 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 C -0.12 -1.91 6.71 31.99 0.21 -1.70 16 20 C 0.10 1.06 6.69 86.86 0.58 1.64 16 21 N -0.61 -10.78 3.06 -788.04 -2.41 -13.19 16 22 C 0.53 10.29 7.40 87.66 0.65 10.94 16 23 O -0.58 -15.64 12.64 15.92 0.20 -15.44 16 24 C -0.15 -1.79 4.35 29.85 0.13 -1.66 16 25 C 0.11 1.86 1.10 -10.27 -0.01 1.85 16 26 O -0.57 -12.97 13.39 -130.03 -1.74 -14.72 16 27 C -0.17 -2.88 7.17 31.12 0.22 -2.65 16 28 C -0.14 -1.89 8.02 31.12 0.25 -1.64 16 29 C -0.12 -1.34 7.47 31.12 0.23 -1.11 16 30 H 0.05 1.35 6.89 -2.39 -0.02 1.33 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.34 11.12 8.15 -89.69 -0.73 10.39 16 34 H 0.11 2.99 8.13 -2.39 -0.02 2.97 16 35 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 36 H 0.40 18.66 7.90 -92.71 -0.73 17.92 16 37 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 0.63 7.48 -2.39 -0.02 0.61 16 41 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.13 0.90 7.76 -2.39 -0.02 0.88 16 44 H 0.38 9.35 6.19 -74.05 -0.46 8.89 16 45 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.12 0.69 8.10 -2.38 -0.02 0.67 16 Total: -1.00 -73.45 401.98 -1.50 -74.95 By element: Atomic # 1 Polarization: 47.03 SS G_CDS: -0.95 Total: 46.08 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 5.67 Total: 13.28 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -6.66 Total: -114.30 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.59 Total: -64.59 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.45 -1.50 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571455592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.560 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds