Wall clock time and date at job start Tue Mar 31 2020 23:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99877 * 2 1 4 4 C 1.53004 * 109.46831 * 125.00010 * 3 2 1 5 5 O 1.42898 * 109.46565 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99828 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47280 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00458 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.65102 * 359.97438 * 9 7 6 11 11 C 1.54902 * 104.83376 * 204.14477 * 10 9 7 12 12 H 1.09003 * 111.03591 * 81.07772 * 11 10 9 13 13 N 1.46895 * 111.00895 * 204.91165 * 11 10 9 14 14 C 1.46893 * 111.00318 * 267.20018 * 13 11 10 15 15 C 1.50708 * 109.47146 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99719 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99349 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00515 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99490 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00236 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47194 * 300.00675 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00238 * 22 20 18 26 26 C 1.55154 * 101.58416 * 322.99191 * 11 10 9 27 27 C 1.47028 * 125.64662 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.01252 * 298.41502 * 27 9 7 29 29 C 1.53003 * 109.87713 * 59.50738 * 27 9 7 30 30 H 1.08005 * 120.00407 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99981 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00114 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46908 * 5.00015 * 3 2 1 34 34 H 1.08992 * 109.46946 * 245.00102 * 3 2 1 35 35 H 1.08993 * 109.47104 * 60.00103 * 4 3 2 36 36 H 1.08995 * 109.46962 * 299.99607 * 4 3 2 37 37 H 1.08998 * 109.47526 * 59.99699 * 6 5 4 38 38 H 1.09009 * 109.47127 * 299.99963 * 6 5 4 39 39 H 1.08995 * 110.36600 * 85.30405 * 10 9 7 40 40 H 1.08996 * 110.36294 * 322.98911 * 10 9 7 41 41 H 1.00899 * 111.00063 * 143.24194 * 13 11 10 42 42 H 1.09002 * 109.47091 * 59.99845 * 14 13 11 43 43 H 1.09000 * 109.47343 * 299.99463 * 14 13 11 44 44 H 0.96996 * 120.00564 * 359.97438 * 17 15 14 45 45 H 0.97001 * 119.99781 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.72372 * 153.86337 * 26 11 10 47 47 H 1.08999 * 110.72074 * 276.96377 * 26 11 10 48 48 H 1.09003 * 109.46655 * 177.80494 * 29 27 9 49 49 H 1.08990 * 109.47287 * 297.80438 * 29 27 9 50 50 H 1.08996 * 109.47198 * 57.81090 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7499 2.5704 1.1813 6 6 4.6894 2.6992 2.2503 7 6 5.3823 4.0338 2.1521 8 8 5.0998 4.7993 1.2548 9 7 6.3160 4.3769 3.0616 10 6 6.7540 3.5467 4.1984 11 6 7.3112 4.5549 5.2341 12 1 6.5053 5.0105 5.8094 13 7 8.2893 3.9118 6.1216 14 6 7.6421 3.4049 7.3390 15 6 8.6744 2.7529 8.2225 16 8 9.8349 2.7139 7.8721 17 7 8.3077 2.2123 9.4014 18 6 9.2469 1.6196 10.2053 19 1 10.2804 1.5856 9.8937 20 6 8.8690 1.0627 11.4209 21 7 7.6115 1.1046 11.8003 22 14 10.1485 0.2545 12.5160 23 1 9.4944 -0.2573 13.7470 24 1 10.7834 -0.8726 11.7868 25 1 11.1852 1.2517 12.8850 26 6 7.9972 5.5993 4.3144 27 6 7.0665 5.6410 3.0841 28 1 7.6585 5.7396 2.1743 29 6 6.0976 6.8191 3.2044 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2356 2.1130 37 1 5.4284 1.9008 2.1827 38 1 4.1662 2.6302 3.2041 39 1 7.5354 2.8549 3.8841 40 1 5.9088 3.0007 4.6172 41 1 9.0421 4.5441 6.3487 42 1 6.8814 2.6727 7.0682 43 1 7.1759 4.2322 7.8741 44 1 7.3795 2.2432 9.6814 45 1 7.3477 0.7155 12.6488 46 1 8.0377 6.5740 4.8007 47 1 8.9970 5.2682 4.0335 48 1 6.6624 7.7497 3.2598 49 1 5.4437 6.8422 2.3328 50 1 5.4967 6.7046 4.1066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571493053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:04 Heat of formation + Delta-G solvation = -93.655565 kcal Electronic energy + Delta-G solvation = -28806.907527 eV Core-core repulsion = 24641.769626 eV Total energy + Delta-G solvation = -4165.137901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52333 -38.76627 -38.22374 -37.45026 -35.33489 -34.85451 -33.84626 -32.39080 -31.29767 -30.11800 -29.98146 -27.62311 -26.32395 -26.06320 -24.12100 -23.37411 -22.32688 -20.82434 -20.23058 -19.45495 -19.16841 -17.95299 -17.53329 -16.88337 -16.82219 -16.15497 -16.01379 -15.62711 -15.47694 -15.22967 -14.73221 -14.53308 -14.26604 -14.07727 -13.74837 -13.64710 -13.55677 -13.50108 -13.11435 -12.99135 -12.78866 -12.54271 -12.29512 -12.05388 -11.87847 -11.74881 -11.57682 -11.57273 -11.47421 -11.25414 -11.18399 -11.05562 -10.78899 -10.48300 -10.26291 -10.03844 -9.89090 -9.76303 -9.55369 -8.86999 -8.56271 -8.23032 -8.02206 -6.46927 -3.88017 1.81642 2.41767 2.42932 3.16359 3.22725 3.26761 3.48806 3.83675 3.96944 4.14520 4.29408 4.34264 4.53109 4.58515 4.67620 4.74167 4.79914 4.85017 4.91310 4.97853 4.98871 5.06280 5.08110 5.16083 5.18370 5.26357 5.39119 5.43361 5.43700 5.56539 5.62019 5.63229 5.64866 5.69830 5.81606 5.87063 5.88340 6.03705 6.18272 6.20977 6.22176 6.32995 6.72908 7.06639 7.28225 7.49110 7.50186 7.98663 8.00238 8.54983 9.12274 9.48033 9.99006 10.70539 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009770 B = 0.002039 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.086079 B =13732.254086 C =16150.038659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.064 3.936 5 O -0.366 6.366 6 C 0.049 3.951 7 C 0.533 3.467 8 O -0.521 6.521 9 N -0.614 5.614 10 C 0.104 3.896 11 C 0.075 3.925 12 H 0.063 0.937 13 N -0.657 5.657 14 C 0.050 3.950 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.284 1.284 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.132 4.132 27 C 0.141 3.859 28 H 0.078 0.922 29 C -0.164 4.164 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.357 0.643 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 3.815 -18.329 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.284 6.284 6 C -0.031 4.031 7 C 0.320 3.680 8 O -0.396 6.396 9 N -0.351 5.351 10 C -0.020 4.020 11 C -0.036 4.036 12 H 0.081 0.919 13 N -0.290 5.290 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.210 1.210 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.171 4.171 27 C 0.038 3.962 28 H 0.096 0.904 29 C -0.222 4.222 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.178 0.822 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.788 3.641 -19.388 22.485 hybrid contribution -0.175 0.005 1.657 1.666 sum -10.963 3.645 -17.732 21.163 Atomic orbital electron populations 1.23921 0.95895 1.02111 1.00463 1.22805 0.96036 0.97982 1.00471 1.20635 0.97897 0.95956 0.98480 1.22513 0.94046 0.85972 0.98695 1.87963 1.54310 1.37644 1.48483 1.22172 0.93175 0.95790 0.91975 1.19820 0.78940 0.88120 0.81090 1.90708 1.63045 1.52499 1.33371 1.48470 1.39367 1.19040 1.28230 1.22469 0.99835 0.93931 0.85721 1.22615 0.94780 0.92815 0.93431 0.91885 1.59956 1.10766 1.42135 1.16190 1.21760 0.96821 0.99212 0.90515 1.19759 0.89405 0.85034 0.83348 1.90530 1.19479 1.62869 1.73856 1.41857 1.11212 1.50413 1.16379 1.19656 0.92198 1.32495 0.98697 0.87926 1.25273 0.96980 0.97868 0.97779 1.69601 1.15795 1.45693 1.23149 0.85910 0.79972 0.79495 0.78809 1.20971 1.19848 1.19898 1.22950 0.99434 0.99837 0.94846 1.21484 0.92238 0.83763 0.98720 0.90416 1.22170 0.99988 0.97078 1.02985 0.88398 0.88241 0.87083 0.90505 0.89943 0.92828 0.92858 0.90032 0.90167 0.89503 0.90756 0.82222 0.89606 0.93609 0.77459 0.91771 0.89693 0.89160 0.91629 0.91046 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 14.32 29.01 0.42 -0.72 16 2 C -0.15 -1.01 9.52 -36.02 -0.34 -1.35 16 3 C -0.09 -0.71 6.03 -27.88 -0.17 -0.88 16 4 C 0.06 0.53 5.92 37.16 0.22 0.75 16 5 O -0.37 -4.23 9.88 -55.14 -0.54 -4.78 16 6 C 0.05 0.48 5.42 36.01 0.20 0.68 16 7 C 0.53 6.68 7.71 -10.98 -0.08 6.59 16 8 O -0.52 -8.43 15.40 -14.35 -0.22 -8.65 16 9 N -0.61 -6.68 3.08 -163.02 -0.50 -7.18 16 10 C 0.10 1.05 6.39 -2.53 -0.02 1.03 16 11 C 0.07 0.79 3.38 -65.57 -0.22 0.57 16 12 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 13 N -0.66 -9.15 6.04 -105.73 -0.64 -9.79 16 14 C 0.05 0.78 6.03 -4.98 -0.03 0.75 16 15 C 0.44 9.75 7.82 -10.98 -0.09 9.67 16 16 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 17 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 22 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.13 -1.21 5.89 -24.90 -0.15 -1.35 16 27 C 0.14 1.43 3.50 -66.95 -0.23 1.19 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 C -0.16 -1.61 9.05 37.16 0.34 -1.27 16 30 H 0.10 0.57 7.84 -52.48 -0.41 0.15 16 31 H 0.10 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.11 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.08 0.62 7.79 -51.93 -0.40 0.21 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.64 7.85 -51.92 -0.41 0.24 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 41 H 0.36 5.16 8.14 -39.29 -0.32 4.84 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 44 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.85 6.76 -51.93 -0.35 0.50 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 416.04 15.07 6.27 6.27 Total: -1.00 -32.98 416.04 -8.73 -41.72 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.42 Total: 10.84 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.40 Total: 7.86 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.47 Total: -53.81 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.68 Total: -28.40 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.98 -8.73 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571493053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.940 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds