Wall clock time and date at job start Tue Mar 31 2020 23:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99877 * 2 1 4 4 C 1.53004 * 109.46831 * 125.00010 * 3 2 1 5 5 O 1.42898 * 109.46565 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99828 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47280 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00458 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.65102 * 359.97438 * 9 7 6 11 11 C 1.54902 * 104.83376 * 204.14477 * 10 9 7 12 12 H 1.09003 * 111.03591 * 81.07772 * 11 10 9 13 13 N 1.46895 * 111.00895 * 204.91165 * 11 10 9 14 14 C 1.46893 * 111.00318 * 267.20018 * 13 11 10 15 15 C 1.50708 * 109.47146 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99719 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99349 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00515 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99490 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00236 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47194 * 300.00675 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00238 * 22 20 18 26 26 C 1.55154 * 101.58416 * 322.99191 * 11 10 9 27 27 C 1.47028 * 125.64662 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.01252 * 298.41502 * 27 9 7 29 29 C 1.53003 * 109.87713 * 59.50738 * 27 9 7 30 30 H 1.08005 * 120.00407 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99981 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00114 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46908 * 5.00015 * 3 2 1 34 34 H 1.08992 * 109.46946 * 245.00102 * 3 2 1 35 35 H 1.08993 * 109.47104 * 60.00103 * 4 3 2 36 36 H 1.08995 * 109.46962 * 299.99607 * 4 3 2 37 37 H 1.08998 * 109.47526 * 59.99699 * 6 5 4 38 38 H 1.09009 * 109.47127 * 299.99963 * 6 5 4 39 39 H 1.08995 * 110.36600 * 85.30405 * 10 9 7 40 40 H 1.08996 * 110.36294 * 322.98911 * 10 9 7 41 41 H 1.00899 * 111.00063 * 143.24194 * 13 11 10 42 42 H 1.09002 * 109.47091 * 59.99845 * 14 13 11 43 43 H 1.09000 * 109.47343 * 299.99463 * 14 13 11 44 44 H 0.96996 * 120.00564 * 359.97438 * 17 15 14 45 45 H 0.97001 * 119.99781 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.72372 * 153.86337 * 26 11 10 47 47 H 1.08999 * 110.72074 * 276.96377 * 26 11 10 48 48 H 1.09003 * 109.46655 * 177.80494 * 29 27 9 49 49 H 1.08990 * 109.47287 * 297.80438 * 29 27 9 50 50 H 1.08996 * 109.47198 * 57.81090 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7499 2.5704 1.1813 6 6 4.6894 2.6992 2.2503 7 6 5.3823 4.0338 2.1521 8 8 5.0998 4.7993 1.2548 9 7 6.3160 4.3769 3.0616 10 6 6.7540 3.5467 4.1984 11 6 7.3112 4.5549 5.2341 12 1 6.5053 5.0105 5.8094 13 7 8.2893 3.9118 6.1216 14 6 7.6421 3.4049 7.3390 15 6 8.6744 2.7529 8.2225 16 8 9.8349 2.7139 7.8721 17 7 8.3077 2.2123 9.4014 18 6 9.2469 1.6196 10.2053 19 1 10.2804 1.5856 9.8937 20 6 8.8690 1.0627 11.4209 21 7 7.6115 1.1046 11.8003 22 14 10.1485 0.2545 12.5160 23 1 9.4944 -0.2573 13.7470 24 1 10.7834 -0.8726 11.7868 25 1 11.1852 1.2517 12.8850 26 6 7.9972 5.5993 4.3144 27 6 7.0665 5.6410 3.0841 28 1 7.6585 5.7396 2.1743 29 6 6.0976 6.8191 3.2044 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2356 2.1130 37 1 5.4284 1.9008 2.1827 38 1 4.1662 2.6302 3.2041 39 1 7.5354 2.8549 3.8841 40 1 5.9088 3.0007 4.6172 41 1 9.0421 4.5441 6.3487 42 1 6.8814 2.6727 7.0682 43 1 7.1759 4.2322 7.8741 44 1 7.3795 2.2432 9.6814 45 1 7.3477 0.7155 12.6488 46 1 8.0377 6.5740 4.8007 47 1 8.9970 5.2682 4.0335 48 1 6.6624 7.7497 3.2598 49 1 5.4437 6.8422 2.3328 50 1 5.4967 6.7046 4.1066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571493053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:04 Heat of formation + Delta-G solvation = -116.417554 kcal Electronic energy + Delta-G solvation = -28807.894561 eV Core-core repulsion = 24641.769626 eV Total energy + Delta-G solvation = -4166.124935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41765 -40.13638 -39.36741 -38.40858 -36.22691 -35.89352 -35.55275 -33.28025 -33.18768 -31.04405 -30.70650 -28.43455 -27.79338 -26.86379 -25.73975 -23.98542 -23.22733 -21.67767 -21.07282 -20.74112 -20.15026 -19.85908 -18.43568 -17.69365 -17.62824 -17.55483 -16.88300 -16.69751 -16.51862 -16.31551 -16.18501 -15.78108 -15.37155 -15.11713 -14.99653 -14.63495 -14.57990 -14.34663 -13.97530 -13.91319 -13.77355 -13.55476 -13.44600 -13.33557 -13.06190 -12.94168 -12.79909 -12.55286 -12.40674 -12.19729 -12.12697 -12.05107 -12.01212 -11.97207 -11.62757 -11.47197 -10.85459 -10.73070 -10.30570 -10.27484 -9.98517 -9.77061 -9.37020 -8.44311 -5.92459 1.31294 1.41570 1.43970 1.49385 1.54099 1.63144 2.09456 2.30721 2.70521 2.99479 3.23682 3.33484 3.49829 3.62284 3.76486 3.98812 4.00467 4.09433 4.15842 4.20739 4.23691 4.27145 4.31280 4.36397 4.38507 4.44910 4.47775 4.54480 4.60588 4.65986 4.68650 4.87157 4.88852 4.93740 4.99750 5.02054 5.06930 5.09040 5.25107 5.39204 5.43730 5.72730 5.84202 5.91117 6.04874 6.11725 6.36595 6.42995 6.63116 7.07038 7.15740 7.60306 8.15475 8.72603 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009770 B = 0.002039 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.086079 B =13732.254086 C =16150.038659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C -0.092 4.092 4 C 0.062 3.938 5 O -0.396 6.396 6 C 0.049 3.951 7 C 0.526 3.474 8 O -0.567 6.567 9 N -0.610 5.610 10 C 0.104 3.896 11 C 0.078 3.922 12 H 0.076 0.924 13 N -0.667 5.667 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.122 4.122 27 C 0.136 3.864 28 H 0.070 0.930 29 C -0.157 4.157 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.353 0.647 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.045 0.955 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 3.394 -17.704 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.179 4.179 3 C -0.129 4.129 4 C -0.014 4.014 5 O -0.315 6.315 6 C -0.030 4.030 7 C 0.315 3.685 8 O -0.445 6.445 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.033 4.033 12 H 0.094 0.906 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.160 4.160 27 C 0.033 3.967 28 H 0.088 0.912 29 C -0.215 4.215 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.231 0.769 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.471 3.217 -18.753 22.217 hybrid contribution 0.040 0.173 1.389 1.400 sum -11.430 3.390 -17.365 21.064 Atomic orbital electron populations 1.24086 0.95899 1.02759 0.99673 1.22833 0.96213 0.97746 1.01154 1.20623 0.97721 0.96439 0.98145 1.22666 0.94273 0.85227 0.99257 1.87931 1.54946 1.39312 1.49349 1.22281 0.93539 0.94596 0.92577 1.20374 0.78861 0.88714 0.80529 1.90685 1.64611 1.54025 1.35220 1.48510 1.38697 1.19326 1.27984 1.22512 1.00414 0.93691 0.85242 1.22634 0.94475 0.93102 0.93051 0.90573 1.59917 1.11515 1.42973 1.15623 1.21626 0.94894 1.00030 0.90203 1.20904 0.90167 0.83413 0.82938 1.90503 1.21851 1.63954 1.74615 1.41929 1.10964 1.51127 1.17093 1.19615 0.91977 1.34479 1.00150 0.90291 1.25997 0.98887 0.97918 0.98463 1.69658 1.16848 1.45960 1.23603 0.85027 0.77776 0.78453 0.77336 1.19700 1.19769 1.19773 1.22895 0.98777 1.00372 0.93940 1.21577 0.92402 0.83781 0.98949 0.91160 1.22096 0.99679 0.97851 1.01844 0.88456 0.86966 0.85972 0.91395 0.90648 0.91494 0.91878 0.88123 0.87935 0.90075 0.88891 0.82644 0.87390 0.91227 0.76938 0.91369 0.87937 0.89405 0.89771 0.93596 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 14.32 67.78 0.97 -1.09 16 2 C -0.16 -1.93 9.52 25.65 0.24 -1.69 16 3 C -0.09 -1.38 6.03 29.85 0.18 -1.20 16 4 C 0.06 0.95 5.92 71.98 0.43 1.38 16 5 O -0.40 -8.94 9.88 -129.95 -1.28 -10.22 16 6 C 0.05 0.90 5.42 71.24 0.39 1.29 16 7 C 0.53 12.86 7.71 87.66 0.68 13.53 16 8 O -0.57 -18.70 15.40 16.00 0.25 -18.45 16 9 N -0.61 -12.39 3.08 -788.05 -2.43 -14.82 16 10 C 0.10 1.85 6.39 86.85 0.55 2.40 16 11 C 0.08 1.42 3.38 46.30 0.16 1.58 16 12 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16 13 N -0.67 -17.06 6.04 -488.43 -2.95 -20.01 16 14 C 0.06 1.88 6.03 85.56 0.52 2.39 16 15 C 0.44 19.16 7.82 87.66 0.69 19.85 16 16 O -0.62 -32.33 15.78 -3.05 -0.05 -32.38 16 17 N -0.57 -27.74 5.29 -306.98 -1.62 -29.37 16 18 C -0.33 -18.18 9.68 84.04 0.81 -17.37 16 19 H 0.08 4.61 7.16 -2.92 -0.02 4.59 16 20 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 21 N -0.92 -48.07 13.05 21.66 0.28 -47.78 16 22 Si 0.99 41.72 29.55 68.60 2.03 43.75 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 C -0.12 -1.95 5.89 31.78 0.19 -1.76 16 27 C 0.14 2.57 3.50 45.34 0.16 2.73 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 C -0.16 -2.88 9.05 71.98 0.65 -2.23 16 30 H 0.10 1.06 7.84 -2.91 -0.02 1.03 16 31 H 0.11 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.12 1.17 8.06 -2.91 -0.02 1.14 16 33 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.39 7.85 -2.38 -0.02 1.37 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.32 7.47 -2.39 -0.02 1.30 16 41 H 0.35 9.60 8.14 -89.69 -0.73 8.87 16 42 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 44 H 0.40 18.12 7.90 -92.71 -0.73 17.39 16 45 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 46 H 0.10 1.31 7.83 -2.38 -0.02 1.29 16 47 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.04 1.10 6.76 -2.39 -0.02 1.08 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -72.45 416.04 0.77 -71.68 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.53 Total: 37.99 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.07 Total: 19.62 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -6.72 Total: -111.98 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -1.08 Total: -61.05 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.45 0.77 -71.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571493053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.741 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds