Wall clock time and date at job start Tue Mar 31 2020 23:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49734 * 2 1 4 4 C 1.53043 * 109.49845 * 120.06385 * 2 1 3 5 5 C 1.53047 * 109.53764 * 58.58228 * 4 2 1 6 6 H 1.08999 * 109.49780 * 301.41907 * 5 4 2 7 7 C 1.50703 * 109.52242 * 181.33192 * 5 4 2 8 8 O 1.20832 * 119.99900 * 0.15161 * 7 5 4 9 9 O 1.34223 * 119.99613 * 180.14969 * 7 5 4 10 10 C 1.53195 * 109.30714 * 61.37067 * 5 4 2 11 11 N 1.46927 * 108.77502 * 305.35607 * 10 5 4 12 12 C 1.34766 * 120.63491 * 233.58766 * 11 10 5 13 13 O 1.21588 * 120.00462 * 185.03692 * 12 11 10 14 14 N 1.34776 * 120.00063 * 5.03487 * 12 11 10 15 15 C 1.46501 * 120.00510 * 185.01545 * 14 12 11 16 16 C 1.53032 * 109.46451 * 155.00273 * 15 14 12 17 17 C 1.53190 * 109.34077 * 181.40395 * 16 15 14 18 18 N 1.46925 * 108.77615 * 305.34825 * 17 16 15 19 19 C 1.36938 * 120.63047 * 233.58858 * 18 17 16 20 20 H 1.08003 * 120.00205 * 35.84842 * 19 18 17 21 21 C 1.38811 * 119.99817 * 215.85492 * 19 18 17 22 22 N 1.31620 * 120.00346 * 0.70123 * 21 19 18 23 23 Si 1.86807 * 119.99762 * 180.70650 * 21 19 18 24 24 H 1.48501 * 109.47183 * 59.99674 * 23 21 19 25 25 H 1.48502 * 109.46669 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47022 * 299.99722 * 23 21 19 27 27 C 1.46924 * 118.73733 * 53.60638 * 18 17 16 28 28 C 1.53104 * 109.50670 * 275.05842 * 15 14 12 29 29 C 1.46926 * 118.73540 * 53.86684 * 11 10 5 30 30 H 1.09003 * 109.47473 * 299.93334 * 1 2 3 31 31 H 1.08999 * 109.47136 * 59.93718 * 1 2 3 32 32 H 1.09006 * 109.47149 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.45597 * 298.56787 * 4 2 1 34 34 H 1.08994 * 109.45901 * 178.60868 * 4 2 1 35 35 H 0.96706 * 117.00035 * 180.02562 * 9 7 5 36 36 H 1.09001 * 109.58182 * 185.57606 * 10 5 4 37 37 H 1.08996 * 109.59157 * 65.14720 * 10 5 4 38 38 H 0.96996 * 119.99992 * 5.02335 * 14 12 11 39 39 H 1.09001 * 109.44533 * 35.03314 * 15 14 12 40 40 H 1.09003 * 109.49850 * 61.43634 * 16 15 14 41 41 H 1.08999 * 109.49558 * 301.37325 * 16 15 14 42 42 H 1.08998 * 109.58925 * 65.13954 * 17 16 15 43 43 H 1.09004 * 109.58283 * 185.56184 * 17 16 15 44 44 H 0.96991 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58651 * 66.18553 * 27 18 17 46 46 H 1.08997 * 109.58385 * 186.60229 * 27 18 17 47 47 H 1.09004 * 109.49482 * 58.66774 * 28 15 14 48 48 H 1.09005 * 109.51300 * 298.60060 * 28 15 14 49 49 H 1.09008 * 109.58592 * 65.92113 * 29 11 10 50 50 H 1.08993 * 109.58938 * 186.34752 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5029 -2.1554 1.2667 6 1 0.4132 -2.1351 1.2547 7 6 1.9794 -2.8565 2.5127 8 8 2.6757 -2.2700 3.3072 9 8 1.6302 -4.1325 2.7399 10 6 2.0140 -2.9040 0.0317 11 7 1.6514 -2.1386 -1.1689 12 6 0.9748 -2.7228 -2.1774 13 8 0.7605 -2.1063 -3.2032 14 7 0.5355 -3.9904 -2.0489 15 6 -0.1027 -4.6631 -3.1831 16 6 0.0555 -6.1778 -3.0324 17 6 -0.5821 -6.8768 -4.2372 18 7 -1.9747 -6.4258 -4.3632 19 6 -2.9991 -7.3326 -4.4225 20 1 -2.9484 -8.2433 -3.8440 21 6 -4.1027 -7.0815 -5.2262 22 7 -4.1582 -5.9783 -5.9419 23 14 -5.5091 -8.3093 -5.2918 24 1 -6.0850 -8.4754 -3.9332 25 1 -6.5587 -7.8105 -6.2164 26 1 -5.0017 -9.6176 -5.7777 27 6 -2.2473 -4.9834 -4.4248 28 6 -1.5910 -4.3056 -3.2179 29 6 2.0461 -0.7258 -1.2518 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6987 -0.1951 2.1390 34 1 3.1305 -0.7440 1.2355 35 1 1.9597 -4.5397 3.5528 36 1 1.5554 -3.8919 -0.0125 37 1 3.0979 -3.0042 0.0876 38 1 0.6419 -4.4574 -1.2054 39 1 0.3701 -4.3390 -4.1101 40 1 -0.4386 -6.5060 -2.1179 41 1 1.1148 -6.4299 -2.9842 42 1 -0.0316 -6.6200 -5.1422 43 1 -0.5597 -7.9562 -4.0873 44 1 -4.9292 -5.8030 -6.5038 45 1 -1.8327 -4.5721 -5.3451 46 1 -3.3237 -4.8135 -4.3988 47 1 -1.7036 -3.2247 -3.3020 48 1 -2.0700 -4.6511 -2.3017 49 1 3.1327 -0.6520 -1.2982 50 1 1.6088 -0.2759 -2.1430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589273749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:31 Heat of formation + Delta-G solvation = -100.447910 kcal Electronic energy + Delta-G solvation = -31142.113409 eV Core-core repulsion = 26976.680970 eV Total energy + Delta-G solvation = -4165.432439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24984 -40.17845 -38.35225 -37.10860 -36.49719 -34.53758 -33.71311 -32.45914 -31.90073 -29.94548 -29.38667 -27.26134 -25.93704 -25.10175 -24.65270 -22.22409 -22.14490 -21.56970 -20.24679 -19.56075 -18.95805 -18.45512 -18.20088 -17.00340 -16.74312 -16.60082 -15.90292 -15.30699 -14.97209 -14.64808 -14.61615 -14.29507 -14.27228 -13.91632 -13.70944 -13.53253 -13.42057 -13.34658 -12.95628 -12.59511 -12.42818 -12.28567 -12.04633 -11.91684 -11.65232 -11.45594 -11.31466 -11.15339 -10.99142 -10.90697 -10.87279 -10.83841 -10.76877 -10.32363 -10.18824 -10.08651 -9.92942 -9.76533 -9.54355 -8.91077 -8.53726 -8.35946 -6.52848 -5.76114 -3.29972 1.73286 2.45338 2.73758 3.30733 3.38857 3.44156 3.44766 3.88666 4.06369 4.27041 4.45089 4.49426 4.56375 4.73138 4.87149 4.96087 5.04826 5.22761 5.32759 5.34186 5.42257 5.46027 5.48810 5.52211 5.53533 5.70586 5.74297 5.77044 5.83986 5.87886 6.04212 6.09303 6.14206 6.27135 6.29743 6.42986 6.51554 6.64569 6.71023 6.82064 6.92190 6.99606 7.08746 7.45867 7.48106 7.79329 7.82869 8.04855 8.54458 8.72951 9.26578 9.85389 10.46050 11.31111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002650 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.010133 B =10563.486609 C =11195.628229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.100 4.100 6 H 0.119 0.881 7 C 0.486 3.514 8 O -0.512 6.512 9 O -0.513 6.513 10 C 0.126 3.874 11 N -0.631 5.631 12 C 0.707 3.293 13 O -0.581 6.581 14 N -0.740 5.740 15 C 0.168 3.832 16 C -0.139 4.139 17 C 0.149 3.851 18 N -0.593 5.593 19 C -0.257 4.257 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.174 3.826 28 C -0.147 4.147 29 C 0.130 3.870 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.389 0.611 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.255 0.745 45 H 0.019 0.981 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.066 0.934 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.273 8.924 16.993 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.108 0.892 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.137 0.863 7 C 0.328 3.672 8 O -0.400 6.400 9 O -0.325 6.325 10 C 0.001 3.999 11 N -0.369 5.369 12 C 0.409 3.591 13 O -0.458 6.458 14 N -0.395 5.395 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.022 3.978 18 N -0.316 5.316 19 C -0.387 4.387 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.048 3.952 28 C -0.187 4.187 29 C 0.007 3.993 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.271 0.729 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.224 0.776 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.008 9.747 15.901 23.326 hybrid contribution -0.481 -1.123 1.135 1.668 sum 13.527 8.623 17.036 23.400 Atomic orbital electron populations 1.21857 0.94380 1.02361 1.01993 1.21638 0.96973 0.99711 0.94237 0.89245 1.21469 1.01371 0.91910 0.98751 1.21562 1.04117 0.96197 0.90145 0.86304 1.23337 0.76641 0.79712 0.87547 1.90732 1.35529 1.66375 1.47346 1.84557 1.72161 1.27916 1.47863 1.21421 1.00561 0.94819 0.83058 1.47214 1.60227 1.11786 1.17685 1.15866 0.78198 0.81976 0.83054 1.90934 1.62877 1.63633 1.28326 1.45745 1.63934 1.13239 1.16616 1.20934 0.93655 0.91290 0.87656 1.22354 0.99637 0.94101 1.01819 1.20852 0.86882 0.96795 0.93260 1.44019 1.00054 1.01858 1.85695 1.19082 0.97740 1.01414 1.20492 0.92028 1.25336 0.99957 0.97399 0.96276 1.69916 1.30191 1.24809 1.29719 0.86360 0.81747 0.81076 0.77443 1.20954 1.21591 1.20838 1.20824 1.00791 0.82262 0.91316 1.22609 0.94198 0.99965 1.01963 1.21641 0.99180 0.79537 0.98924 0.92649 0.92049 0.92362 0.90551 0.90654 0.72879 0.89047 0.90770 0.77553 0.90221 0.91991 0.92782 0.96216 0.92398 0.93433 0.96295 0.88917 0.92804 0.93001 0.91614 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.71 37.16 0.32 -0.95 16 2 C -0.11 -0.78 3.21 -90.27 -0.29 -1.07 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.10 -0.70 4.01 -26.68 -0.11 -0.80 16 5 C -0.10 -0.74 2.44 -91.65 -0.22 -0.97 16 6 H 0.12 0.90 6.33 -51.93 -0.33 0.57 16 7 C 0.49 3.88 7.63 36.01 0.27 4.15 16 8 O -0.51 -5.48 16.74 -18.75 -0.31 -5.80 16 9 O -0.51 -3.12 13.35 -39.24 -0.52 -3.64 16 10 C 0.13 1.00 5.64 -3.71 -0.02 0.98 16 11 N -0.63 -6.75 2.40 -178.23 -0.43 -7.18 16 12 C 0.71 10.52 8.26 -86.93 -0.72 9.81 16 13 O -0.58 -11.14 15.44 5.29 0.08 -11.06 16 14 N -0.74 -10.42 4.98 -58.61 -0.29 -10.71 16 15 C 0.17 2.94 2.38 -67.86 -0.16 2.78 16 16 C -0.14 -2.30 5.55 -26.62 -0.15 -2.44 16 17 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 18 N -0.59 -14.82 2.98 -172.33 -0.51 -15.33 16 19 C -0.26 -7.01 9.55 -15.06 -0.14 -7.15 16 20 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 21 C 0.01 0.26 5.23 -17.43 -0.09 0.17 16 22 N -0.90 -26.25 10.86 55.49 0.60 -25.65 16 23 Si 0.90 21.55 29.55 -169.99 -5.02 16.52 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.17 4.27 5.23 -3.72 -0.02 4.25 16 28 C -0.15 -2.96 5.65 -26.58 -0.15 -3.11 16 29 C 0.13 1.22 5.85 -3.49 -0.02 1.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 33 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.41 0.90 9.10 45.56 0.41 1.31 16 36 H 0.09 0.69 5.58 -51.93 -0.29 0.40 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.39 4.42 6.09 -40.82 -0.25 4.17 16 39 H 0.08 1.58 7.65 -51.93 -0.40 1.18 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.09 2.55 6.13 -51.93 -0.32 2.23 16 47 H 0.05 1.11 8.09 -51.93 -0.42 0.69 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 50 H 0.10 1.13 7.03 -51.93 -0.37 0.77 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -34.07 387.15 -9.39 -43.45 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.29 Total: 3.68 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -1.52 Total: 9.88 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.63 Total: -58.87 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.76 Total: -20.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.07 -9.39 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.994 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds