Wall clock time and date at job start Tue Mar 31 2020 23:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49734 * 2 1 4 4 C 1.53043 * 109.49845 * 120.06385 * 2 1 3 5 5 C 1.53047 * 109.53764 * 58.58228 * 4 2 1 6 6 H 1.08999 * 109.49780 * 301.41907 * 5 4 2 7 7 C 1.50703 * 109.52242 * 181.33192 * 5 4 2 8 8 O 1.20832 * 119.99900 * 0.15161 * 7 5 4 9 9 O 1.34223 * 119.99613 * 180.14969 * 7 5 4 10 10 C 1.53195 * 109.30714 * 61.37067 * 5 4 2 11 11 N 1.46927 * 108.77502 * 305.35607 * 10 5 4 12 12 C 1.34766 * 120.63491 * 233.58766 * 11 10 5 13 13 O 1.21588 * 120.00462 * 185.03692 * 12 11 10 14 14 N 1.34776 * 120.00063 * 5.03487 * 12 11 10 15 15 C 1.46501 * 120.00510 * 185.01545 * 14 12 11 16 16 C 1.53032 * 109.46451 * 155.00273 * 15 14 12 17 17 C 1.53190 * 109.34077 * 181.40395 * 16 15 14 18 18 N 1.46925 * 108.77615 * 305.34825 * 17 16 15 19 19 C 1.36938 * 120.63047 * 233.58858 * 18 17 16 20 20 H 1.08003 * 120.00205 * 35.84842 * 19 18 17 21 21 C 1.38811 * 119.99817 * 215.85492 * 19 18 17 22 22 N 1.31620 * 120.00346 * 0.70123 * 21 19 18 23 23 Si 1.86807 * 119.99762 * 180.70650 * 21 19 18 24 24 H 1.48501 * 109.47183 * 59.99674 * 23 21 19 25 25 H 1.48502 * 109.46669 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47022 * 299.99722 * 23 21 19 27 27 C 1.46924 * 118.73733 * 53.60638 * 18 17 16 28 28 C 1.53104 * 109.50670 * 275.05842 * 15 14 12 29 29 C 1.46926 * 118.73540 * 53.86684 * 11 10 5 30 30 H 1.09003 * 109.47473 * 299.93334 * 1 2 3 31 31 H 1.08999 * 109.47136 * 59.93718 * 1 2 3 32 32 H 1.09006 * 109.47149 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.45597 * 298.56787 * 4 2 1 34 34 H 1.08994 * 109.45901 * 178.60868 * 4 2 1 35 35 H 0.96706 * 117.00035 * 180.02562 * 9 7 5 36 36 H 1.09001 * 109.58182 * 185.57606 * 10 5 4 37 37 H 1.08996 * 109.59157 * 65.14720 * 10 5 4 38 38 H 0.96996 * 119.99992 * 5.02335 * 14 12 11 39 39 H 1.09001 * 109.44533 * 35.03314 * 15 14 12 40 40 H 1.09003 * 109.49850 * 61.43634 * 16 15 14 41 41 H 1.08999 * 109.49558 * 301.37325 * 16 15 14 42 42 H 1.08998 * 109.58925 * 65.13954 * 17 16 15 43 43 H 1.09004 * 109.58283 * 185.56184 * 17 16 15 44 44 H 0.96991 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58651 * 66.18553 * 27 18 17 46 46 H 1.08997 * 109.58385 * 186.60229 * 27 18 17 47 47 H 1.09004 * 109.49482 * 58.66774 * 28 15 14 48 48 H 1.09005 * 109.51300 * 298.60060 * 28 15 14 49 49 H 1.09008 * 109.58592 * 65.92113 * 29 11 10 50 50 H 1.08993 * 109.58938 * 186.34752 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5029 -2.1554 1.2667 6 1 0.4132 -2.1351 1.2547 7 6 1.9794 -2.8565 2.5127 8 8 2.6757 -2.2700 3.3072 9 8 1.6302 -4.1325 2.7399 10 6 2.0140 -2.9040 0.0317 11 7 1.6514 -2.1386 -1.1689 12 6 0.9748 -2.7228 -2.1774 13 8 0.7605 -2.1063 -3.2032 14 7 0.5355 -3.9904 -2.0489 15 6 -0.1027 -4.6631 -3.1831 16 6 0.0555 -6.1778 -3.0324 17 6 -0.5821 -6.8768 -4.2372 18 7 -1.9747 -6.4258 -4.3632 19 6 -2.9991 -7.3326 -4.4225 20 1 -2.9484 -8.2433 -3.8440 21 6 -4.1027 -7.0815 -5.2262 22 7 -4.1582 -5.9783 -5.9419 23 14 -5.5091 -8.3093 -5.2918 24 1 -6.0850 -8.4754 -3.9332 25 1 -6.5587 -7.8105 -6.2164 26 1 -5.0017 -9.6176 -5.7777 27 6 -2.2473 -4.9834 -4.4248 28 6 -1.5910 -4.3056 -3.2179 29 6 2.0461 -0.7258 -1.2518 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6987 -0.1951 2.1390 34 1 3.1305 -0.7440 1.2355 35 1 1.9597 -4.5397 3.5528 36 1 1.5554 -3.8919 -0.0125 37 1 3.0979 -3.0042 0.0876 38 1 0.6419 -4.4574 -1.2054 39 1 0.3701 -4.3390 -4.1101 40 1 -0.4386 -6.5060 -2.1179 41 1 1.1148 -6.4299 -2.9842 42 1 -0.0316 -6.6200 -5.1422 43 1 -0.5597 -7.9562 -4.0873 44 1 -4.9292 -5.8030 -6.5038 45 1 -1.8327 -4.5721 -5.3451 46 1 -3.3237 -4.8135 -4.3988 47 1 -1.7036 -3.2247 -3.3020 48 1 -2.0700 -4.6511 -2.3017 49 1 3.1327 -0.6520 -1.2982 50 1 1.6088 -0.2759 -2.1430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589273749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:30 Heat of formation + Delta-G solvation = -123.137296 kcal Electronic energy + Delta-G solvation = -31143.097294 eV Core-core repulsion = 26976.680970 eV Total energy + Delta-G solvation = -4166.416325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02212 -41.08756 -39.49957 -38.45343 -37.09776 -36.04107 -34.79236 -33.63379 -33.11656 -31.65671 -31.07091 -28.02267 -27.15115 -26.16244 -25.75342 -23.84004 -23.66737 -22.38516 -21.35238 -21.06278 -19.79836 -19.34809 -18.98272 -18.61398 -17.67968 -17.52269 -16.94292 -16.75388 -16.23914 -15.89016 -15.50836 -15.36317 -15.27600 -15.10617 -15.00655 -14.75128 -14.62188 -14.48132 -14.14154 -13.99616 -13.88709 -13.20316 -13.13900 -12.87386 -12.75385 -12.65619 -12.55793 -12.52222 -12.30214 -12.08808 -12.02564 -11.97708 -11.86553 -11.80646 -11.57173 -11.54115 -11.52031 -11.36878 -11.05147 -10.54711 -10.11692 -9.51261 -8.55625 -7.84427 -5.42036 1.12316 1.48927 1.51013 1.57814 1.58377 2.08595 2.15986 2.52100 2.90370 3.32930 3.45537 3.64225 3.71886 3.82062 3.90598 3.92037 4.11135 4.14394 4.23992 4.33460 4.39215 4.47071 4.52776 4.62118 4.66722 4.71976 4.72722 4.83396 4.85010 4.91693 4.92433 5.07181 5.10562 5.12219 5.12937 5.18312 5.20689 5.35685 5.37020 5.50643 5.55365 5.62240 5.64000 5.66585 5.77372 5.92533 6.46658 6.97834 6.99076 7.18865 7.59108 7.86008 8.42018 9.20991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002650 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.010133 B =10563.486609 C =11195.628229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.092 4.092 5 C -0.097 4.097 6 H 0.119 0.881 7 C 0.496 3.504 8 O -0.541 6.541 9 O -0.510 6.510 10 C 0.124 3.876 11 N -0.621 5.621 12 C 0.704 3.296 13 O -0.630 6.630 14 N -0.727 5.727 15 C 0.182 3.818 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.611 5.611 19 C -0.266 4.266 20 H 0.071 0.929 21 C -0.049 4.049 22 N -0.938 5.938 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.274 1.274 27 C 0.185 3.815 28 C -0.129 4.129 29 C 0.126 3.874 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.430 0.570 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.407 0.593 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.250 0.750 45 H -0.014 1.014 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 7.831 19.756 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.127 0.873 4 C -0.130 4.130 5 C -0.117 4.117 6 H 0.137 0.863 7 C 0.339 3.661 8 O -0.431 6.431 9 O -0.324 6.324 10 C 0.001 3.999 11 N -0.358 5.358 12 C 0.406 3.594 13 O -0.511 6.511 14 N -0.384 5.384 15 C 0.076 3.924 16 C -0.161 4.161 17 C 0.017 3.983 18 N -0.335 5.335 19 C -0.396 4.396 20 H 0.089 0.911 21 C -0.244 4.244 22 N -0.584 5.584 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.199 1.199 27 C 0.058 3.942 28 C -0.170 4.170 29 C 0.003 3.997 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.246 0.754 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.029 0.971 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.004 0.996 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.637 8.619 18.755 25.895 hybrid contribution -0.926 -0.775 0.306 1.245 sum 14.711 7.844 19.061 25.323 Atomic orbital electron populations 1.21846 0.95401 1.01368 1.01901 1.21578 0.95929 1.00581 0.93373 0.87311 1.21424 1.01605 0.91639 0.98316 1.21508 1.04090 0.96333 0.89773 0.86337 1.23242 0.75817 0.79981 0.87093 1.90734 1.36931 1.67125 1.48326 1.84516 1.71842 1.26970 1.49053 1.21618 1.01738 0.94737 0.81813 1.47177 1.58747 1.12384 1.17447 1.16018 0.78306 0.81836 0.83258 1.90911 1.64716 1.64765 1.30668 1.45327 1.63478 1.13155 1.16414 1.20513 0.91420 0.92419 0.88039 1.22147 1.01605 0.92269 1.00069 1.21044 0.84579 0.97906 0.94788 1.44257 1.01688 1.01515 1.86008 1.19491 0.98372 1.01712 1.20019 0.91116 1.26142 1.02806 0.99074 0.96379 1.70125 1.30721 1.26688 1.30836 0.85291 0.78441 0.78864 0.77491 1.19938 1.22358 1.19921 1.20485 0.98762 0.83061 0.91884 1.22335 0.96245 0.98607 0.99811 1.21791 1.00213 0.78748 0.98944 0.91249 0.93637 0.93783 0.90349 0.90142 0.70810 0.88232 0.89006 0.75442 0.92739 0.90751 0.89048 0.97061 0.91357 0.94130 0.99569 0.92463 0.93968 0.92429 0.89643 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.71 71.98 0.63 -1.77 16 2 C -0.10 -1.23 3.21 -10.57 -0.03 -1.26 16 3 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.09 -1.08 4.01 30.62 0.12 -0.95 16 5 C -0.10 -1.18 2.44 -11.46 -0.03 -1.21 16 6 H 0.12 1.51 6.33 -2.39 -0.02 1.49 16 7 C 0.50 6.49 7.63 71.24 0.54 7.04 16 8 O -0.54 -10.27 16.74 21.95 0.37 -9.90 16 9 O -0.51 -4.53 13.35 -51.35 -0.69 -5.22 16 10 C 0.12 1.60 5.64 86.36 0.49 2.09 16 11 N -0.62 -12.26 2.40 -836.07 -2.01 -14.26 16 12 C 0.70 20.43 8.26 179.06 1.48 21.90 16 13 O -0.63 -24.74 15.44 -3.99 -0.06 -24.80 16 14 N -0.73 -19.20 4.98 -457.60 -2.28 -21.47 16 15 C 0.18 6.20 2.38 45.04 0.11 6.31 16 16 C -0.12 -3.69 5.55 30.67 0.17 -3.52 16 17 C 0.14 5.72 6.52 86.36 0.56 6.28 16 18 N -0.61 -30.86 2.98 -699.12 -2.09 -32.95 16 19 C -0.27 -14.51 9.55 84.03 0.80 -13.70 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.05 -2.73 5.23 84.86 0.44 -2.29 16 22 N -0.94 -56.68 10.86 21.65 0.24 -56.45 16 23 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C 0.18 9.46 5.23 86.36 0.45 9.91 16 28 C -0.13 -5.31 5.65 30.69 0.17 -5.14 16 29 C 0.13 2.19 5.85 86.51 0.51 2.70 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.83 5.97 -2.38 -0.01 0.82 16 33 H 0.08 0.94 8.07 -2.38 -0.02 0.92 16 34 H 0.08 0.91 8.13 -2.39 -0.02 0.89 16 35 H 0.43 0.51 9.10 -74.05 -0.67 -0.16 16 36 H 0.10 1.13 5.58 -2.39 -0.01 1.11 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.41 7.91 6.09 -92.71 -0.56 7.35 16 39 H 0.05 2.18 7.65 -2.39 -0.02 2.16 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.07 2.57 7.93 -2.39 -0.02 2.56 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.06 3.32 6.13 -2.39 -0.01 3.31 16 47 H 0.04 1.81 8.09 -2.38 -0.02 1.79 16 48 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.07 1.71 7.03 -2.39 -0.02 1.69 16 Total: -1.00 -77.00 387.15 1.65 -75.35 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.28 Total: 16.58 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 6.41 Total: 26.39 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.13 Total: -125.14 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.38 Total: -39.92 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.00 1.65 -75.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.789 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds