Wall clock time and date at job start Tue Mar 31 2020 23:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49669 * 2 1 4 4 C 1.53043 * 109.49673 * 239.94307 * 2 1 3 5 5 C 1.53042 * 109.52466 * 301.38826 * 4 2 1 6 6 H 1.09000 * 109.50259 * 58.57895 * 5 4 2 7 7 C 1.50701 * 109.49940 * 178.68021 * 5 4 2 8 8 O 1.20824 * 119.99597 * 359.97438 * 7 5 4 9 9 O 1.34224 * 120.00079 * 179.97438 * 7 5 4 10 10 C 1.53203 * 109.31072 * 298.61251 * 5 4 2 11 11 N 1.46930 * 108.76049 * 54.65608 * 10 5 4 12 12 C 1.34777 * 120.62557 * 126.36128 * 11 10 5 13 13 O 1.21586 * 119.99971 * 174.94266 * 12 11 10 14 14 N 1.34778 * 120.00303 * 354.94393 * 12 11 10 15 15 C 1.46497 * 120.00300 * 185.13925 * 14 12 11 16 16 C 1.53035 * 109.46241 * 275.03072 * 15 14 12 17 17 C 1.53195 * 109.31601 * 178.59835 * 16 15 14 18 18 N 1.46927 * 108.76326 * 54.65557 * 17 16 15 19 19 C 1.36935 * 120.62949 * 126.36326 * 18 17 16 20 20 H 1.08004 * 119.99384 * 208.44845 * 19 18 17 21 21 C 1.38802 * 120.00212 * 28.45304 * 19 18 17 22 22 N 1.31623 * 119.99904 * 18.64994 * 21 19 18 23 23 Si 1.86800 * 120.00325 * 198.64586 * 21 19 18 24 24 H 1.48504 * 109.46889 * 94.98467 * 23 21 19 25 25 H 1.48494 * 109.47730 * 214.98779 * 23 21 19 26 26 H 1.48502 * 109.47038 * 334.99193 * 23 21 19 27 27 C 1.46931 * 118.73565 * 306.38482 * 18 17 16 28 28 C 1.53042 * 109.46381 * 154.97405 * 15 14 12 29 29 C 1.46919 * 118.74052 * 306.38452 * 11 10 5 30 30 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47289 * 300.05807 * 1 2 3 32 32 H 1.08998 * 109.47752 * 60.06107 * 1 2 3 33 33 H 1.09003 * 109.46337 * 61.39655 * 4 2 1 34 34 H 1.08991 * 109.45828 * 181.37224 * 4 2 1 35 35 H 0.96707 * 116.99479 * 179.97438 * 9 7 5 36 36 H 1.09000 * 109.59790 * 294.87147 * 10 5 4 37 37 H 1.08991 * 109.58389 * 174.43683 * 10 5 4 38 38 H 0.97000 * 119.99750 * 5.14652 * 14 12 11 39 39 H 1.09007 * 109.45993 * 34.99900 * 15 14 12 40 40 H 1.08999 * 109.50012 * 298.56527 * 16 15 14 41 41 H 1.09005 * 109.50286 * 58.65916 * 16 15 14 42 42 H 1.09000 * 109.59660 * 294.87199 * 17 16 15 43 43 H 1.09000 * 109.70346 * 174.50654 * 17 16 15 44 44 H 0.97002 * 120.00068 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58500 * 293.82163 * 27 18 17 46 46 H 1.08998 * 109.69849 * 173.46767 * 27 18 17 47 47 H 1.09003 * 109.49314 * 301.33876 * 28 15 14 48 48 H 1.08996 * 109.49384 * 61.40278 * 28 15 14 49 49 H 1.09000 * 109.58454 * 293.81718 * 29 11 10 50 50 H 1.09005 * 109.70359 * 173.46709 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 1.5033 -2.1554 -1.2663 6 1 0.4136 -2.1355 -1.2539 7 6 1.9801 -2.8562 -2.5123 8 8 2.6779 -2.2700 -3.3056 9 8 1.6296 -4.1316 -2.7408 10 6 2.0154 -2.9038 -0.0315 11 7 1.6529 -2.1382 1.1691 12 6 0.9759 -2.7224 2.1775 13 8 0.7620 -2.1061 3.2035 14 7 0.5360 -3.9899 2.0487 15 6 -0.2956 -4.5868 3.0966 16 6 0.6023 -5.1645 4.1930 17 6 -0.2710 -5.7565 5.3037 18 7 -1.1979 -6.7289 4.7085 19 6 -1.2712 -8.0084 5.1907 20 1 -1.5602 -8.8167 4.5353 21 6 -0.9741 -8.2665 6.5218 22 7 -0.9827 -7.2862 7.4000 23 14 -0.5623 -10.0051 7.0668 24 1 0.9116 -10.1866 7.0706 25 1 -1.0928 -10.2340 8.4347 26 1 -1.1782 -10.9771 6.1280 27 6 -2.0442 -6.3023 3.5857 28 6 -1.1509 -5.7039 2.4945 29 6 2.0420 -0.7238 1.2492 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6982 -0.1953 -2.1391 34 1 3.1304 -0.7436 -1.2358 35 1 1.9593 -4.5386 -3.5538 36 1 3.0993 -3.0035 -0.0878 37 1 1.5573 -3.8918 0.0130 38 1 0.7702 -4.5069 1.2621 39 1 -0.9449 -3.8227 3.5243 40 1 1.2344 -5.9460 3.7714 41 1 1.2281 -4.3730 4.6055 42 1 -0.8374 -4.9604 5.7869 43 1 0.3590 -6.2555 6.0399 44 1 -0.7754 -7.4666 8.3303 45 1 -2.7550 -5.5507 3.9289 46 1 -2.5843 -7.1605 3.1859 47 1 -1.7733 -5.2963 1.6978 48 1 -0.5022 -6.4800 2.0885 49 1 3.1281 -0.6458 1.2974 50 1 1.6034 -0.2718 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589273751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:34 Heat of formation + Delta-G solvation = -99.428194 kcal Electronic energy + Delta-G solvation = -31090.612646 eV Core-core repulsion = 26925.224425 eV Total energy + Delta-G solvation = -4165.388221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.27267 -40.19841 -38.39087 -37.14517 -36.51530 -34.56421 -33.73887 -32.48636 -31.90774 -29.99531 -29.41424 -27.29518 -25.95871 -25.11810 -24.66310 -22.25575 -22.20283 -21.58541 -20.28837 -19.56540 -18.99065 -18.46906 -18.20851 -16.99350 -16.78237 -16.57958 -16.00453 -15.30637 -14.95991 -14.68441 -14.63872 -14.31653 -14.26697 -13.91012 -13.68640 -13.64296 -13.46341 -13.36058 -12.97943 -12.62871 -12.43878 -12.32827 -12.08194 -11.94517 -11.67468 -11.45292 -11.34869 -11.18862 -11.09852 -10.97550 -10.87754 -10.84646 -10.73090 -10.36187 -10.19783 -10.07085 -9.97002 -9.73785 -9.51711 -8.93226 -8.56264 -8.36883 -6.66703 -5.77285 -3.19729 1.71565 2.43643 2.71952 3.29036 3.38986 3.46079 3.47515 3.86702 4.04323 4.25195 4.42533 4.51026 4.54920 4.71175 4.84516 4.93898 5.03325 5.20479 5.30786 5.31182 5.38937 5.44587 5.47219 5.48380 5.50189 5.66969 5.71882 5.73416 5.81392 5.85772 5.99681 6.07133 6.10694 6.24984 6.27447 6.39668 6.47381 6.61606 6.67911 6.78733 6.89167 6.96298 7.05671 7.40047 7.44171 7.69182 7.81940 8.03001 8.46723 8.71184 9.22469 9.86090 10.43286 11.31331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002598 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.925760 B =10773.956179 C =11587.855069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.098 4.098 5 C -0.099 4.099 6 H 0.119 0.881 7 C 0.486 3.514 8 O -0.512 6.512 9 O -0.513 6.513 10 C 0.125 3.875 11 N -0.630 5.630 12 C 0.708 3.292 13 O -0.581 6.581 14 N -0.740 5.740 15 C 0.169 3.831 16 C -0.146 4.146 17 C 0.175 3.825 18 N -0.592 5.592 19 C -0.256 4.256 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.138 4.138 29 C 0.130 3.870 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.389 0.611 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.021 0.979 43 H 0.086 0.914 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 12.388 -20.944 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.108 0.892 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.137 0.863 7 C 0.327 3.673 8 O -0.399 6.399 9 O -0.325 6.325 10 C 0.001 3.999 11 N -0.369 5.369 12 C 0.409 3.591 13 O -0.458 6.458 14 N -0.395 5.395 15 C 0.065 3.935 16 C -0.187 4.187 17 C 0.048 3.952 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.178 4.178 29 C 0.007 3.993 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.225 0.775 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.049 13.152 -19.810 24.536 hybrid contribution 0.648 -1.438 -0.777 1.758 sum 6.697 11.714 -20.587 24.615 Atomic orbital electron populations 1.21859 0.94474 1.02274 1.01940 1.21561 0.96939 0.99762 0.94287 0.89197 1.21472 1.01451 0.91911 0.98711 1.21549 1.04030 0.96179 0.90135 0.86349 1.23337 0.76692 0.79710 0.87532 1.90733 1.35440 1.66362 1.47409 1.84554 1.72099 1.27975 1.47893 1.21431 1.00621 0.94819 0.83065 1.47201 1.60564 1.11580 1.17533 1.15865 0.78275 0.81975 0.82957 1.90935 1.62567 1.64411 1.27839 1.45739 1.56076 1.12616 1.25118 1.20915 0.91230 0.94491 0.86848 1.22563 0.98940 0.99238 0.97950 1.20727 0.91096 0.91187 0.92151 1.44109 1.41387 1.09898 1.36111 1.19173 1.43306 0.83898 0.92145 0.91660 1.25057 1.01685 0.97201 0.95598 1.70064 1.51428 1.30996 1.01784 0.86297 0.78280 0.84542 0.77789 1.21506 1.21811 1.20385 1.20824 0.91700 0.96994 0.88276 1.22346 0.99003 0.97203 0.99297 1.21538 0.99349 0.79511 0.98887 0.92398 0.92100 0.92672 0.90551 0.90613 0.72861 0.90741 0.89030 0.77526 0.90169 0.92848 0.92672 0.96107 0.89628 0.93606 0.96213 0.92359 0.92687 0.91915 0.91646 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.70 37.16 0.32 -0.84 16 2 C -0.11 -0.74 3.21 -90.50 -0.29 -1.03 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.10 -0.67 4.01 -26.69 -0.11 -0.78 16 5 C -0.10 -0.70 2.44 -91.64 -0.22 -0.92 16 6 H 0.12 0.82 6.33 -51.93 -0.33 0.49 16 7 C 0.49 3.75 7.63 36.01 0.27 4.03 16 8 O -0.51 -5.39 16.74 -18.75 -0.31 -5.70 16 9 O -0.51 -2.99 13.35 -39.24 -0.52 -3.51 16 10 C 0.13 0.99 5.65 -3.70 -0.02 0.97 16 11 N -0.63 -6.67 2.41 -178.50 -0.43 -7.11 16 12 C 0.71 10.42 8.26 -86.92 -0.72 9.70 16 13 O -0.58 -11.05 15.44 5.29 0.08 -10.97 16 14 N -0.74 -10.29 4.99 -58.64 -0.29 -10.58 16 15 C 0.17 2.91 2.38 -67.89 -0.16 2.75 16 16 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 17 C 0.17 4.26 5.32 -3.71 -0.02 4.24 16 18 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 19 C -0.26 -6.96 9.57 -15.06 -0.14 -7.11 16 20 H 0.07 1.74 7.90 -52.48 -0.41 1.32 16 21 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 22 N -0.90 -26.33 11.33 55.49 0.63 -25.70 16 23 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.04 6.51 -3.71 -0.02 3.01 16 28 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 29 C 0.13 1.20 5.81 -3.72 -0.02 1.18 16 30 H 0.06 0.52 5.97 -51.93 -0.31 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.41 0.82 9.10 45.56 0.41 1.23 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.68 5.56 -51.93 -0.29 0.39 16 38 H 0.39 4.35 6.06 -40.82 -0.25 4.10 16 39 H 0.08 1.56 7.66 -51.93 -0.40 1.16 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 2.33 6.13 -51.93 -0.32 2.01 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 1.11 7.04 -51.93 -0.37 0.75 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -34.33 387.41 -9.36 -43.70 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.29 Total: 2.92 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.51 Total: 9.73 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.61 Total: -58.62 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.76 Total: -20.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.33 -9.36 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.731 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds