Wall clock time and date at job start Tue Mar 31 2020 23:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49669 * 2 1 4 4 C 1.53043 * 109.49673 * 239.94307 * 2 1 3 5 5 C 1.53042 * 109.52466 * 301.38826 * 4 2 1 6 6 H 1.09000 * 109.50259 * 58.57895 * 5 4 2 7 7 C 1.50701 * 109.49940 * 178.68021 * 5 4 2 8 8 O 1.20824 * 119.99597 * 359.97438 * 7 5 4 9 9 O 1.34224 * 120.00079 * 179.97438 * 7 5 4 10 10 C 1.53203 * 109.31072 * 298.61251 * 5 4 2 11 11 N 1.46930 * 108.76049 * 54.65608 * 10 5 4 12 12 C 1.34777 * 120.62557 * 126.36128 * 11 10 5 13 13 O 1.21586 * 119.99971 * 174.94266 * 12 11 10 14 14 N 1.34778 * 120.00303 * 354.94393 * 12 11 10 15 15 C 1.46497 * 120.00300 * 185.13925 * 14 12 11 16 16 C 1.53035 * 109.46241 * 275.03072 * 15 14 12 17 17 C 1.53195 * 109.31601 * 178.59835 * 16 15 14 18 18 N 1.46927 * 108.76326 * 54.65557 * 17 16 15 19 19 C 1.36935 * 120.62949 * 126.36326 * 18 17 16 20 20 H 1.08004 * 119.99384 * 208.44845 * 19 18 17 21 21 C 1.38802 * 120.00212 * 28.45304 * 19 18 17 22 22 N 1.31623 * 119.99904 * 18.64994 * 21 19 18 23 23 Si 1.86800 * 120.00325 * 198.64586 * 21 19 18 24 24 H 1.48504 * 109.46889 * 94.98467 * 23 21 19 25 25 H 1.48494 * 109.47730 * 214.98779 * 23 21 19 26 26 H 1.48502 * 109.47038 * 334.99193 * 23 21 19 27 27 C 1.46931 * 118.73565 * 306.38482 * 18 17 16 28 28 C 1.53042 * 109.46381 * 154.97405 * 15 14 12 29 29 C 1.46919 * 118.74052 * 306.38452 * 11 10 5 30 30 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47289 * 300.05807 * 1 2 3 32 32 H 1.08998 * 109.47752 * 60.06107 * 1 2 3 33 33 H 1.09003 * 109.46337 * 61.39655 * 4 2 1 34 34 H 1.08991 * 109.45828 * 181.37224 * 4 2 1 35 35 H 0.96707 * 116.99479 * 179.97438 * 9 7 5 36 36 H 1.09000 * 109.59790 * 294.87147 * 10 5 4 37 37 H 1.08991 * 109.58389 * 174.43683 * 10 5 4 38 38 H 0.97000 * 119.99750 * 5.14652 * 14 12 11 39 39 H 1.09007 * 109.45993 * 34.99900 * 15 14 12 40 40 H 1.08999 * 109.50012 * 298.56527 * 16 15 14 41 41 H 1.09005 * 109.50286 * 58.65916 * 16 15 14 42 42 H 1.09000 * 109.59660 * 294.87199 * 17 16 15 43 43 H 1.09000 * 109.70346 * 174.50654 * 17 16 15 44 44 H 0.97002 * 120.00068 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58500 * 293.82163 * 27 18 17 46 46 H 1.08998 * 109.69849 * 173.46767 * 27 18 17 47 47 H 1.09003 * 109.49314 * 301.33876 * 28 15 14 48 48 H 1.08996 * 109.49384 * 61.40278 * 28 15 14 49 49 H 1.09000 * 109.58454 * 293.81718 * 29 11 10 50 50 H 1.09005 * 109.70359 * 173.46709 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 1.5033 -2.1554 -1.2663 6 1 0.4136 -2.1355 -1.2539 7 6 1.9801 -2.8562 -2.5123 8 8 2.6779 -2.2700 -3.3056 9 8 1.6296 -4.1316 -2.7408 10 6 2.0154 -2.9038 -0.0315 11 7 1.6529 -2.1382 1.1691 12 6 0.9759 -2.7224 2.1775 13 8 0.7620 -2.1061 3.2035 14 7 0.5360 -3.9899 2.0487 15 6 -0.2956 -4.5868 3.0966 16 6 0.6023 -5.1645 4.1930 17 6 -0.2710 -5.7565 5.3037 18 7 -1.1979 -6.7289 4.7085 19 6 -1.2712 -8.0084 5.1907 20 1 -1.5602 -8.8167 4.5353 21 6 -0.9741 -8.2665 6.5218 22 7 -0.9827 -7.2862 7.4000 23 14 -0.5623 -10.0051 7.0668 24 1 0.9116 -10.1866 7.0706 25 1 -1.0928 -10.2340 8.4347 26 1 -1.1782 -10.9771 6.1280 27 6 -2.0442 -6.3023 3.5857 28 6 -1.1509 -5.7039 2.4945 29 6 2.0420 -0.7238 1.2492 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.6982 -0.1953 -2.1391 34 1 3.1304 -0.7436 -1.2358 35 1 1.9593 -4.5386 -3.5538 36 1 3.0993 -3.0035 -0.0878 37 1 1.5573 -3.8918 0.0130 38 1 0.7702 -4.5069 1.2621 39 1 -0.9449 -3.8227 3.5243 40 1 1.2344 -5.9460 3.7714 41 1 1.2281 -4.3730 4.6055 42 1 -0.8374 -4.9604 5.7869 43 1 0.3590 -6.2555 6.0399 44 1 -0.7754 -7.4666 8.3303 45 1 -2.7550 -5.5507 3.9289 46 1 -2.5843 -7.1605 3.1859 47 1 -1.7733 -5.2963 1.6978 48 1 -0.5022 -6.4800 2.0885 49 1 3.1281 -0.6458 1.2974 50 1 1.6034 -0.2718 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589273751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:33 Heat of formation + Delta-G solvation = -122.396737 kcal Electronic energy + Delta-G solvation = -31091.608637 eV Core-core repulsion = 26925.224425 eV Total energy + Delta-G solvation = -4166.384212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02736 -41.08944 -39.52492 -38.47166 -37.09319 -36.05407 -34.79792 -33.63342 -33.12592 -31.69165 -31.08960 -28.01100 -27.15246 -26.16829 -25.75401 -23.88157 -23.69874 -22.37610 -21.37319 -21.05712 -19.78516 -19.35562 -18.97588 -18.61013 -17.65422 -17.53716 -16.97861 -16.74207 -16.24849 -15.91544 -15.47621 -15.34621 -15.31596 -15.10657 -15.05296 -14.76845 -14.58898 -14.51645 -14.14553 -14.03303 -13.88067 -13.17745 -13.13740 -13.03248 -12.79171 -12.60347 -12.56152 -12.49041 -12.29640 -12.09160 -12.03761 -11.94325 -11.85956 -11.80232 -11.56968 -11.52595 -11.51483 -11.36453 -11.04520 -10.56714 -10.12223 -9.51952 -8.69845 -7.86402 -5.32067 1.12738 1.48352 1.49946 1.57869 1.59422 2.08873 2.15739 2.52970 2.89576 3.29418 3.45665 3.64468 3.68764 3.82499 3.90769 3.91937 4.11246 4.12424 4.24317 4.33660 4.38170 4.47585 4.50402 4.62675 4.66707 4.70062 4.72845 4.82600 4.83524 4.90248 4.93140 5.06062 5.10829 5.11765 5.13706 5.16412 5.21222 5.34515 5.37176 5.46327 5.54390 5.62415 5.63139 5.66272 5.70624 5.92151 6.40058 6.97392 6.99409 7.14757 7.58673 7.86048 8.39238 9.20802 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002598 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.925760 B =10773.956179 C =11587.855069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.108 0.892 4 C -0.093 4.093 5 C -0.094 4.094 6 H 0.124 0.876 7 C 0.495 3.505 8 O -0.542 6.542 9 O -0.510 6.510 10 C 0.123 3.877 11 N -0.620 5.620 12 C 0.705 3.295 13 O -0.629 6.629 14 N -0.727 5.727 15 C 0.182 3.818 16 C -0.130 4.130 17 C 0.185 3.815 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.074 0.926 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.263 1.263 27 C 0.142 3.858 28 C -0.120 4.120 29 C 0.125 3.875 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.429 0.571 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.407 0.593 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.043 0.957 42 H -0.011 1.011 43 H 0.050 0.950 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 11.730 -24.272 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.126 0.874 4 C -0.131 4.131 5 C -0.114 4.114 6 H 0.141 0.859 7 C 0.338 3.662 8 O -0.432 6.432 9 O -0.323 6.323 10 C 0.000 4.000 11 N -0.357 5.357 12 C 0.406 3.594 13 O -0.510 6.510 14 N -0.384 5.384 15 C 0.077 3.923 16 C -0.170 4.170 17 C 0.058 3.942 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.187 1.187 27 C 0.016 3.984 28 C -0.160 4.160 29 C 0.003 3.997 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.292 0.708 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.246 0.754 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.007 0.993 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.645 12.473 -23.248 27.206 hybrid contribution 0.439 -1.196 0.209 1.291 sum 7.084 11.277 -23.039 26.611 Atomic orbital electron populations 1.21842 0.95048 1.01538 1.01977 1.21498 0.96287 1.00471 0.93185 0.87388 1.21429 1.01485 0.91757 0.98408 1.21489 1.04284 0.96141 0.89496 0.85852 1.23271 0.75848 0.79983 0.87105 1.90734 1.36874 1.67143 1.48452 1.84514 1.71765 1.27010 1.49057 1.21619 1.01547 0.94860 0.82023 1.47162 1.59089 1.12170 1.17302 1.16015 0.78367 0.81881 0.83126 1.90913 1.64440 1.65511 1.30155 1.45322 1.55611 1.12621 1.24807 1.20501 0.90716 0.94179 0.86953 1.22304 0.98403 0.98784 0.97508 1.20425 0.90818 0.90016 0.92935 1.44358 1.42428 1.09390 1.37084 1.19572 1.42076 0.85171 0.92295 0.90825 1.25867 1.02312 1.00882 0.95847 1.70231 1.53211 1.33143 1.01763 0.85245 0.77754 0.80379 0.77043 1.21470 1.22525 1.18698 1.21035 0.92013 0.97409 0.87940 1.22134 0.98655 0.96789 0.98400 1.21684 1.00136 0.78781 0.99139 0.93493 0.93536 0.91163 0.90184 0.90482 0.70831 0.89479 0.88147 0.75409 0.92645 0.92180 0.93806 0.99330 0.93133 0.94227 0.97069 0.91335 0.88966 0.90621 0.90161 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.70 71.98 0.63 -1.45 16 2 C -0.10 -1.14 3.21 -10.72 -0.03 -1.18 16 3 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.09 -1.03 4.01 30.62 0.12 -0.91 16 5 C -0.09 -1.06 2.44 -11.46 -0.03 -1.09 16 6 H 0.12 1.33 6.33 -2.39 -0.02 1.31 16 7 C 0.50 6.19 7.63 71.24 0.54 6.74 16 8 O -0.54 -10.10 16.74 21.97 0.37 -9.74 16 9 O -0.51 -4.19 13.35 -51.36 -0.69 -4.88 16 10 C 0.12 1.58 5.65 86.37 0.49 2.06 16 11 N -0.62 -12.12 2.41 -836.91 -2.02 -14.14 16 12 C 0.70 20.16 8.26 179.05 1.48 21.64 16 13 O -0.63 -24.46 15.44 -3.99 -0.06 -24.53 16 14 N -0.73 -18.83 4.99 -457.69 -2.28 -21.11 16 15 C 0.18 6.11 2.38 45.02 0.11 6.22 16 16 C -0.13 -5.25 5.65 30.67 0.17 -5.07 16 17 C 0.18 9.38 5.32 86.36 0.46 9.84 16 18 N -0.61 -30.55 2.99 -699.10 -2.09 -32.64 16 19 C -0.26 -14.23 9.57 84.03 0.80 -13.42 16 20 H 0.07 3.83 7.90 -2.91 -0.02 3.80 16 21 C -0.05 -3.03 4.87 84.86 0.41 -2.62 16 22 N -0.94 -56.97 11.33 21.65 0.25 -56.73 16 23 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 27 C 0.14 5.62 6.51 86.36 0.56 6.19 16 28 C -0.12 -3.59 5.55 30.67 0.17 -3.42 16 29 C 0.13 2.17 5.81 86.36 0.50 2.67 16 30 H 0.05 0.76 5.97 -2.39 -0.01 0.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.13 -2.39 -0.02 0.86 16 35 H 0.43 0.31 9.10 -74.05 -0.67 -0.36 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.11 5.56 -2.39 -0.01 1.10 16 38 H 0.41 7.71 6.06 -92.71 -0.56 7.15 16 39 H 0.06 2.18 7.66 -2.38 -0.02 2.16 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.04 1.85 8.08 -2.38 -0.02 1.83 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.05 2.90 6.13 -2.39 -0.01 2.88 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 47 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.70 7.04 -2.38 -0.02 1.69 16 Total: -1.00 -77.39 387.41 1.62 -75.77 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.27 Total: 14.83 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 6.39 Total: 26.19 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -6.15 Total: -124.62 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.38 Total: -39.14 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -77.39 1.62 -75.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589273751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.627 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds