Wall clock time and date at job start Tue Mar 31 2020 23:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46180 * 2 1 4 4 C 1.53048 * 109.45750 * 240.04304 * 2 1 3 5 5 C 1.53620 * 109.23946 * 178.49146 * 4 2 1 6 6 N 1.46928 * 108.54743 * 54.85947 * 5 4 2 7 7 C 1.34770 * 120.63379 * 126.36337 * 6 5 4 8 8 O 1.21586 * 120.00227 * 174.68035 * 7 6 5 9 9 N 1.34774 * 119.99990 * 354.95277 * 7 6 5 10 10 C 1.46506 * 120.00266 * 184.42842 * 9 7 6 11 11 C 1.53041 * 109.46116 * 275.07126 * 10 9 7 12 12 C 1.53185 * 109.31473 * 178.61123 * 11 10 9 13 13 N 1.46933 * 108.77226 * 54.63231 * 12 11 10 14 14 C 1.36937 * 120.62650 * 126.36897 * 13 12 11 15 15 H 1.07998 * 120.00440 * 216.73908 * 14 13 12 16 16 C 1.38814 * 120.00054 * 36.74156 * 14 13 12 17 17 N 1.31616 * 119.99975 * 11.44297 * 16 14 13 18 18 Si 1.86804 * 120.00050 * 191.43811 * 16 14 13 19 19 H 1.48505 * 109.46752 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47143 * 210.00052 * 18 16 14 21 21 H 1.48493 * 109.47082 * 330.00359 * 18 16 14 22 22 C 1.46919 * 118.74150 * 306.39197 * 13 12 11 23 23 C 1.53039 * 109.45979 * 154.99896 * 10 9 7 24 24 C 1.46932 * 118.73482 * 306.09446 * 6 5 4 25 25 C 1.53042 * 109.46112 * 119.97844 * 2 1 3 26 26 H 1.08999 * 109.49944 * 61.42838 * 25 2 1 27 27 C 1.50697 * 109.52310 * 301.34975 * 25 2 1 28 28 O 1.20823 * 120.00021 * 0.14867 * 27 25 2 29 29 O 1.34231 * 120.00069 * 180.14447 * 27 25 2 30 30 H 1.08999 * 109.46870 * 300.02369 * 1 2 3 31 31 H 1.08999 * 109.46868 * 60.02058 * 1 2 3 32 32 H 1.08995 * 109.47429 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49585 * 298.57212 * 4 2 1 34 34 H 1.08997 * 109.49615 * 58.63320 * 4 2 1 35 35 H 1.09000 * 109.74356 * 295.11805 * 5 4 2 36 36 H 1.09002 * 109.66318 * 174.55060 * 5 4 2 37 37 H 0.96999 * 120.00161 * 4.42989 * 9 7 6 38 38 H 1.08996 * 109.45642 * 35.02977 * 10 9 7 39 39 H 1.09004 * 109.49627 * 298.56931 * 11 10 9 40 40 H 1.09002 * 109.49831 * 58.65551 * 11 10 9 41 41 H 1.08995 * 109.58808 * 294.85183 * 12 11 10 42 42 H 1.08994 * 109.58851 * 174.41872 * 12 11 10 43 43 H 0.97003 * 120.00096 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.58678 * 293.81974 * 22 13 12 45 45 H 1.08997 * 109.70404 * 173.46463 * 22 13 12 46 46 H 1.08997 * 109.50304 * 301.33958 * 23 10 9 47 47 H 1.09002 * 109.49497 * 61.43629 * 23 10 9 48 48 H 1.09001 * 109.58352 * 173.64642 * 24 6 5 49 49 H 1.08995 * 109.58433 * 293.93070 * 24 6 5 50 50 H 0.96695 * 117.00004 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2503 5 6 3.5755 -0.6847 -1.2644 6 7 4.0679 -1.2490 -0.0003 7 6 4.9620 -2.2573 -0.0005 8 8 5.4348 -2.6509 1.0482 9 7 5.3363 -2.8259 -1.1637 10 6 6.2329 -3.9845 -1.1578 11 6 7.6849 -3.5052 -1.0923 12 6 8.6178 -4.7195 -1.0512 13 7 8.3191 -5.5845 -2.2007 14 6 9.3123 -5.9683 -3.0618 15 1 9.1070 -6.0560 -4.1184 16 6 10.5831 -6.2447 -2.5765 17 7 10.7821 -6.3592 -1.2805 18 14 12.0108 -6.4544 -3.7628 19 1 12.6570 -5.1380 -3.9972 20 1 13.0019 -7.3961 -3.1830 21 1 11.5084 -6.9956 -5.0511 22 6 6.9344 -6.0294 -2.4091 23 6 6.0202 -4.8004 -2.4350 24 6 3.5714 -0.6889 1.2641 25 6 2.0399 -0.7210 1.2499 26 1 1.6978 -1.7559 1.2380 27 6 1.5109 -0.0306 2.4806 28 8 0.7966 0.9376 2.3702 29 8 1.8333 -0.4913 3.6995 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6976 -1.7554 -1.2387 34 1 1.6567 -0.2207 -2.1399 35 1 3.9189 0.3451 -1.3632 36 1 3.9486 -1.2780 -2.0992 37 1 5.0120 -2.4680 -2.0049 38 1 6.0165 -4.6066 -0.2893 39 1 7.9094 -2.9034 -1.9730 40 1 7.8296 -2.9046 -0.1943 41 1 8.4569 -5.2729 -0.1261 42 1 9.6541 -4.3860 -1.1044 43 1 11.6703 -6.5520 -0.9413 44 1 6.6362 -6.6895 -1.5946 45 1 6.8581 -6.5615 -3.3573 46 1 4.9803 -5.1217 -2.4926 47 1 6.2605 -4.1864 -3.3030 48 1 3.9417 -1.2850 2.0981 49 1 3.9164 0.3397 1.3685 50 1 1.4698 -0.0157 4.4588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603417109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:00 Heat of formation + Delta-G solvation = -100.023889 kcal Electronic energy + Delta-G solvation = -30680.927052 eV Core-core repulsion = 26515.512999 eV Total energy + Delta-G solvation = -4165.414052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25705 -40.16853 -38.24624 -37.18575 -36.45437 -34.49995 -34.01231 -32.31563 -31.62522 -29.99448 -29.49970 -28.48757 -25.48187 -24.61598 -23.69233 -22.46615 -22.18763 -21.85497 -20.45760 -19.75805 -19.33026 -18.45671 -18.08966 -16.92459 -16.74025 -16.50945 -15.82423 -15.44807 -14.95056 -14.87401 -14.47168 -14.44992 -14.01334 -13.82865 -13.73091 -13.61226 -13.48855 -13.12749 -12.93468 -12.62450 -12.47437 -12.27728 -12.24052 -11.98288 -11.77967 -11.46221 -11.38423 -11.28486 -11.07438 -10.90568 -10.89102 -10.77078 -10.52668 -10.35684 -10.18618 -10.10708 -9.96919 -9.77401 -9.51935 -8.94500 -8.55592 -8.39688 -6.53616 -5.77489 -3.30604 1.75596 2.45548 2.77711 3.29374 3.37731 3.44287 3.45660 3.88846 4.08517 4.31021 4.39171 4.49335 4.53134 4.75585 4.92902 4.99817 5.06011 5.20892 5.27060 5.34472 5.38629 5.39899 5.42883 5.48466 5.53689 5.57016 5.66348 5.68232 5.85754 5.88367 5.92742 6.11241 6.21401 6.26025 6.27422 6.39222 6.47252 6.61170 6.70024 6.79492 6.89402 6.98377 7.05885 7.38838 7.51855 7.67532 7.82218 8.03373 8.52415 8.70979 9.24027 9.83915 10.46307 11.30560 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002215 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.987464 B =12640.618307 C =13160.268856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 H 0.082 0.918 4 C -0.129 4.129 5 C 0.108 3.892 6 N -0.634 5.634 7 C 0.707 3.293 8 O -0.582 6.582 9 N -0.738 5.738 10 C 0.169 3.831 11 C -0.147 4.147 12 C 0.178 3.822 13 N -0.591 5.591 14 C -0.261 4.261 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.898 5.898 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.149 3.851 23 C -0.138 4.138 24 C 0.143 3.857 25 C -0.093 4.093 26 H 0.114 0.886 27 C 0.489 3.511 28 O -0.509 6.509 29 O -0.511 6.511 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.389 0.611 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.393 14.288 2.708 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.167 4.167 5 C -0.015 4.015 6 N -0.372 5.372 7 C 0.408 3.592 8 O -0.459 6.459 9 N -0.394 5.394 10 C 0.065 3.935 11 C -0.187 4.187 12 C 0.052 3.948 13 N -0.314 5.314 14 C -0.391 4.391 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.541 5.541 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.022 3.978 23 C -0.178 4.178 24 C 0.019 3.981 25 C -0.113 4.113 26 H 0.132 0.868 27 C 0.331 3.669 28 O -0.397 6.397 29 O -0.322 6.322 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.225 0.775 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.127 0.873 49 H 0.087 0.913 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -20.880 13.937 3.197 25.307 hybrid contribution 0.303 0.468 -0.484 0.738 sum -20.577 14.405 2.714 25.265 Atomic orbital electron populations 1.22123 0.94157 1.01954 1.03732 1.20995 0.96732 0.99578 0.91935 0.90010 1.22097 0.95026 1.01772 0.97842 1.21772 0.94125 0.99454 0.86159 1.47211 1.46296 1.37333 1.06391 1.15876 0.79257 0.79226 0.84819 1.90939 1.58444 1.65689 1.30842 1.45715 1.52497 1.34641 1.06519 1.20918 0.88953 0.84619 0.99017 1.22576 0.94871 1.00764 1.00529 1.20662 0.97230 0.87504 0.89390 1.43991 1.02618 1.54641 1.30119 1.19084 0.89802 1.41315 0.88865 0.92104 1.25316 0.99276 0.98632 0.95703 1.69998 1.21487 1.51192 1.11385 0.86306 0.82414 0.77591 0.80473 1.21368 1.21667 1.20340 1.20847 0.85779 0.92150 0.99012 1.22352 0.99504 0.99450 0.96531 1.21224 0.89299 0.99847 0.87764 1.21561 0.98048 1.01821 0.89888 0.86811 1.23268 0.77217 0.81758 0.84673 1.90656 1.35399 1.26629 1.87030 1.84592 1.71148 1.59698 1.16809 0.90032 0.92370 0.93083 0.90903 0.89878 0.91046 0.89907 0.77502 0.90136 0.92882 0.92710 0.95920 0.90437 0.93523 0.96213 0.92353 0.92734 0.92002 0.87343 0.91342 0.73042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.86 37.16 0.33 -0.82 16 2 C -0.07 -0.52 1.87 -90.57 -0.17 -0.69 16 3 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 4 C -0.13 -0.78 5.38 -26.38 -0.14 -0.93 16 5 C 0.11 0.80 6.46 -3.49 -0.02 0.78 16 6 N -0.63 -6.86 2.97 -178.23 -0.53 -7.39 16 7 C 0.71 10.59 8.26 -86.93 -0.72 9.87 16 8 O -0.58 -11.27 15.45 5.29 0.08 -11.19 16 9 N -0.74 -10.30 4.99 -58.64 -0.29 -10.59 16 10 C 0.17 2.92 2.38 -67.89 -0.16 2.76 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.18 4.35 5.23 -3.71 -0.02 4.33 16 13 N -0.59 -14.73 2.95 -172.33 -0.51 -15.24 16 14 C -0.26 -7.11 9.51 -15.06 -0.14 -7.25 16 15 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 16 C 0.01 0.30 5.00 -17.43 -0.09 0.21 16 17 N -0.90 -26.33 11.52 55.49 0.64 -25.69 16 18 Si 0.90 21.59 29.57 -169.99 -5.03 16.57 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 23 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 24 C 0.14 1.41 5.63 -3.71 -0.02 1.39 16 25 C -0.09 -0.75 2.33 -91.65 -0.21 -0.97 16 26 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 27 C 0.49 4.16 7.34 36.00 0.26 4.43 16 28 O -0.51 -5.30 14.33 -18.75 -0.27 -5.57 16 29 O -0.51 -3.62 13.35 -39.26 -0.52 -4.15 16 30 H 0.08 0.72 5.40 -51.93 -0.28 0.44 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.55 5.56 -51.93 -0.29 0.26 16 37 H 0.39 4.27 6.06 -40.82 -0.25 4.02 16 38 H 0.08 1.58 7.65 -51.93 -0.40 1.19 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.13 8.10 -51.93 -0.42 0.70 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 2.10 6.56 -51.93 -0.34 1.76 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.11 1.30 7.04 -51.93 -0.37 0.93 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.41 1.14 9.10 45.56 0.41 1.56 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -34.30 387.80 -9.39 -43.69 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.38 Total: 3.06 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.43 Total: 10.66 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.69 Total: -58.91 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.71 Total: -20.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.30 -9.39 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.335 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds