Wall clock time and date at job start Tue Mar 31 2020 23:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46180 * 2 1 4 4 C 1.53048 * 109.45750 * 240.04304 * 2 1 3 5 5 C 1.53620 * 109.23946 * 178.49146 * 4 2 1 6 6 N 1.46928 * 108.54743 * 54.85947 * 5 4 2 7 7 C 1.34770 * 120.63379 * 126.36337 * 6 5 4 8 8 O 1.21586 * 120.00227 * 174.68035 * 7 6 5 9 9 N 1.34774 * 119.99990 * 354.95277 * 7 6 5 10 10 C 1.46506 * 120.00266 * 184.42842 * 9 7 6 11 11 C 1.53041 * 109.46116 * 275.07126 * 10 9 7 12 12 C 1.53185 * 109.31473 * 178.61123 * 11 10 9 13 13 N 1.46933 * 108.77226 * 54.63231 * 12 11 10 14 14 C 1.36937 * 120.62650 * 126.36897 * 13 12 11 15 15 H 1.07998 * 120.00440 * 216.73908 * 14 13 12 16 16 C 1.38814 * 120.00054 * 36.74156 * 14 13 12 17 17 N 1.31616 * 119.99975 * 11.44297 * 16 14 13 18 18 Si 1.86804 * 120.00050 * 191.43811 * 16 14 13 19 19 H 1.48505 * 109.46752 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47143 * 210.00052 * 18 16 14 21 21 H 1.48493 * 109.47082 * 330.00359 * 18 16 14 22 22 C 1.46919 * 118.74150 * 306.39197 * 13 12 11 23 23 C 1.53039 * 109.45979 * 154.99896 * 10 9 7 24 24 C 1.46932 * 118.73482 * 306.09446 * 6 5 4 25 25 C 1.53042 * 109.46112 * 119.97844 * 2 1 3 26 26 H 1.08999 * 109.49944 * 61.42838 * 25 2 1 27 27 C 1.50697 * 109.52310 * 301.34975 * 25 2 1 28 28 O 1.20823 * 120.00021 * 0.14867 * 27 25 2 29 29 O 1.34231 * 120.00069 * 180.14447 * 27 25 2 30 30 H 1.08999 * 109.46870 * 300.02369 * 1 2 3 31 31 H 1.08999 * 109.46868 * 60.02058 * 1 2 3 32 32 H 1.08995 * 109.47429 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49585 * 298.57212 * 4 2 1 34 34 H 1.08997 * 109.49615 * 58.63320 * 4 2 1 35 35 H 1.09000 * 109.74356 * 295.11805 * 5 4 2 36 36 H 1.09002 * 109.66318 * 174.55060 * 5 4 2 37 37 H 0.96999 * 120.00161 * 4.42989 * 9 7 6 38 38 H 1.08996 * 109.45642 * 35.02977 * 10 9 7 39 39 H 1.09004 * 109.49627 * 298.56931 * 11 10 9 40 40 H 1.09002 * 109.49831 * 58.65551 * 11 10 9 41 41 H 1.08995 * 109.58808 * 294.85183 * 12 11 10 42 42 H 1.08994 * 109.58851 * 174.41872 * 12 11 10 43 43 H 0.97003 * 120.00096 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.58678 * 293.81974 * 22 13 12 45 45 H 1.08997 * 109.70404 * 173.46463 * 22 13 12 46 46 H 1.08997 * 109.50304 * 301.33958 * 23 10 9 47 47 H 1.09002 * 109.49497 * 61.43629 * 23 10 9 48 48 H 1.09001 * 109.58352 * 173.64642 * 24 6 5 49 49 H 1.08995 * 109.58433 * 293.93070 * 24 6 5 50 50 H 0.96695 * 117.00004 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2503 5 6 3.5755 -0.6847 -1.2644 6 7 4.0679 -1.2490 -0.0003 7 6 4.9620 -2.2573 -0.0005 8 8 5.4348 -2.6509 1.0482 9 7 5.3363 -2.8259 -1.1637 10 6 6.2329 -3.9845 -1.1578 11 6 7.6849 -3.5052 -1.0923 12 6 8.6178 -4.7195 -1.0512 13 7 8.3191 -5.5845 -2.2007 14 6 9.3123 -5.9683 -3.0618 15 1 9.1070 -6.0560 -4.1184 16 6 10.5831 -6.2447 -2.5765 17 7 10.7821 -6.3592 -1.2805 18 14 12.0108 -6.4544 -3.7628 19 1 12.6570 -5.1380 -3.9972 20 1 13.0019 -7.3961 -3.1830 21 1 11.5084 -6.9956 -5.0511 22 6 6.9344 -6.0294 -2.4091 23 6 6.0202 -4.8004 -2.4350 24 6 3.5714 -0.6889 1.2641 25 6 2.0399 -0.7210 1.2499 26 1 1.6978 -1.7559 1.2380 27 6 1.5109 -0.0306 2.4806 28 8 0.7966 0.9376 2.3702 29 8 1.8333 -0.4913 3.6995 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.6976 -1.7554 -1.2387 34 1 1.6567 -0.2207 -2.1399 35 1 3.9189 0.3451 -1.3632 36 1 3.9486 -1.2780 -2.0992 37 1 5.0120 -2.4680 -2.0049 38 1 6.0165 -4.6066 -0.2893 39 1 7.9094 -2.9034 -1.9730 40 1 7.8296 -2.9046 -0.1943 41 1 8.4569 -5.2729 -0.1261 42 1 9.6541 -4.3860 -1.1044 43 1 11.6703 -6.5520 -0.9413 44 1 6.6362 -6.6895 -1.5946 45 1 6.8581 -6.5615 -3.3573 46 1 4.9803 -5.1217 -2.4926 47 1 6.2605 -4.1864 -3.3030 48 1 3.9417 -1.2850 2.0981 49 1 3.9164 0.3397 1.3685 50 1 1.4698 -0.0157 4.4588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603417109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:59 Heat of formation + Delta-G solvation = -123.396765 kcal Electronic energy + Delta-G solvation = -30681.940576 eV Core-core repulsion = 26515.512999 eV Total energy + Delta-G solvation = -4166.427576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02227 -41.16573 -39.39689 -38.43276 -37.16705 -36.03051 -34.95153 -33.82961 -32.58288 -31.67715 -31.09721 -29.25416 -27.00560 -25.72282 -24.55994 -23.85795 -23.42283 -23.07568 -21.28594 -21.14410 -20.46468 -19.33799 -19.00591 -18.55459 -17.59920 -17.57502 -16.85554 -16.68190 -16.41135 -15.89482 -15.53704 -15.37032 -15.33907 -15.16989 -14.84989 -14.73417 -14.60608 -14.42779 -14.10349 -13.96001 -13.77249 -13.15867 -13.07879 -12.97977 -12.85598 -12.66432 -12.61492 -12.55829 -12.42127 -12.13198 -12.05304 -11.93839 -11.90528 -11.83455 -11.53367 -11.51615 -11.40785 -11.23704 -10.99224 -10.57779 -10.13638 -9.54145 -8.57319 -7.86188 -5.43350 1.06107 1.48303 1.49016 1.56664 1.58627 2.08364 2.17354 2.51568 2.91940 3.30653 3.47681 3.63224 3.70185 3.79856 3.90973 3.95689 4.10119 4.12892 4.35196 4.38882 4.42264 4.48010 4.51047 4.60651 4.68523 4.70594 4.73510 4.79562 4.84724 4.87429 4.94812 5.06639 5.07931 5.11848 5.13917 5.18407 5.34107 5.35529 5.40968 5.44022 5.48878 5.62158 5.66900 5.68215 5.70696 5.91998 6.44779 6.97029 6.98770 7.16755 7.57969 7.84018 8.41929 9.19977 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002215 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.987464 B =12640.618307 C =13160.268856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 H 0.081 0.919 4 C -0.120 4.120 5 C 0.102 3.898 6 N -0.625 5.625 7 C 0.702 3.298 8 O -0.633 6.633 9 N -0.723 5.723 10 C 0.181 3.819 11 C -0.130 4.130 12 C 0.189 3.811 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.070 0.930 16 C -0.048 4.048 17 N -0.937 5.937 18 Si 0.970 3.030 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.263 1.263 22 C 0.142 3.858 23 C -0.120 4.120 24 C 0.143 3.857 25 C -0.087 4.087 26 H 0.113 0.887 27 C 0.493 3.507 28 O -0.528 6.528 29 O -0.515 6.515 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.409 0.591 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.043 0.957 41 H -0.011 1.011 42 H 0.042 0.958 43 H 0.250 0.750 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.493 15.566 0.147 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.020 4.020 6 N -0.362 5.362 7 C 0.404 3.596 8 O -0.514 6.514 9 N -0.380 5.380 10 C 0.076 3.924 11 C -0.170 4.170 12 C 0.062 3.938 13 N -0.332 5.332 14 C -0.396 4.396 15 H 0.087 0.913 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.187 1.187 22 C 0.016 3.984 23 C -0.159 4.159 24 C 0.019 3.981 25 C -0.107 4.107 26 H 0.131 0.869 27 C 0.336 3.664 28 O -0.418 6.418 29 O -0.329 6.329 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.007 0.993 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -23.061 15.263 0.595 27.661 hybrid contribution 0.887 0.092 0.397 0.977 sum -22.173 15.355 0.992 26.989 Atomic orbital electron populations 1.22055 0.93997 1.02053 1.03404 1.21001 0.96757 0.99468 0.91721 0.90107 1.22062 0.93745 1.01886 0.98156 1.22100 0.95135 1.00281 0.84513 1.47212 1.44931 1.35894 1.08148 1.16051 0.79632 0.79810 0.84122 1.90916 1.60388 1.67435 1.32663 1.45277 1.51738 1.33694 1.07328 1.20503 0.87645 0.85469 0.98791 1.22312 0.96034 0.98424 1.00248 1.20355 0.96427 0.88803 0.88209 1.44237 1.04155 1.55168 1.29617 1.19480 0.90535 1.39999 0.89633 0.91259 1.26134 1.02015 0.99071 0.97147 1.70176 1.21583 1.53029 1.13383 0.85242 0.78946 0.77235 0.78840 1.21155 1.22376 1.18690 1.21041 0.84160 0.94177 0.98993 1.22132 1.00426 0.97299 0.96044 1.21212 0.90533 0.99652 0.86684 1.21516 0.96517 1.02057 0.90617 0.86872 1.23287 0.76745 0.81315 0.85095 1.90658 1.36323 1.27448 1.87372 1.84566 1.71095 1.59985 1.17252 0.91878 0.91157 0.92755 0.91010 0.87382 0.89500 0.88622 0.75193 0.92770 0.92044 0.93860 0.99252 0.93961 0.94142 0.97270 0.91391 0.88990 0.90541 0.89887 0.90335 0.70979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.86 71.98 0.64 -1.24 16 2 C -0.07 -0.82 1.87 -10.76 -0.02 -0.84 16 3 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 4 C -0.12 -1.01 5.38 30.82 0.17 -0.85 16 5 C 0.10 1.14 6.46 86.51 0.56 1.69 16 6 N -0.62 -12.40 2.97 -836.07 -2.48 -14.88 16 7 C 0.70 20.34 8.26 179.06 1.48 21.82 16 8 O -0.63 -25.02 15.45 -3.99 -0.06 -25.08 16 9 N -0.72 -18.60 4.99 -457.69 -2.28 -20.88 16 10 C 0.18 6.09 2.38 45.02 0.11 6.20 16 11 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 12 C 0.19 9.58 5.23 86.36 0.45 10.03 16 13 N -0.61 -30.59 2.95 -699.13 -2.06 -32.65 16 14 C -0.27 -14.51 9.51 84.03 0.80 -13.71 16 15 H 0.07 3.61 7.85 -2.91 -0.02 3.58 16 16 C -0.05 -2.68 5.00 84.86 0.42 -2.26 16 17 N -0.94 -57.00 11.52 21.65 0.25 -56.75 16 18 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 C 0.14 5.68 6.51 86.36 0.56 6.24 16 23 C -0.12 -3.56 5.55 30.67 0.17 -3.39 16 24 C 0.14 2.71 5.63 86.36 0.49 3.19 16 25 C -0.09 -1.29 2.33 -11.46 -0.03 -1.32 16 26 H 0.11 1.71 8.14 -2.39 -0.02 1.70 16 27 C 0.49 7.96 7.34 71.23 0.52 8.49 16 28 O -0.53 -10.51 14.33 21.97 0.31 -10.19 16 29 O -0.52 -6.99 13.35 -51.42 -0.69 -7.68 16 30 H 0.06 1.02 5.40 -2.39 -0.01 1.01 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.84 5.56 -2.39 -0.01 0.83 16 37 H 0.41 7.38 6.06 -92.71 -0.56 6.82 16 38 H 0.05 2.15 7.65 -2.39 -0.02 2.13 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.04 2.41 6.56 -2.39 -0.02 2.39 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.04 7.04 -2.39 -0.02 2.02 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.43 2.05 9.10 -74.06 -0.67 1.37 16 Total: -1.00 -77.77 387.80 1.23 -76.54 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.28 Total: 15.75 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 6.49 Total: 29.01 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.58 Total: -125.16 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.43 Total: -42.95 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -77.77 1.23 -76.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.860 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds