Wall clock time and date at job start Tue Mar 31 2020 23:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49776 * 2 1 4 4 C 1.53185 * 109.49910 * 239.92836 * 2 1 3 5 5 N 1.46928 * 108.77678 * 185.38271 * 4 2 1 6 6 C 1.34776 * 120.63281 * 233.58812 * 5 4 2 7 7 O 1.21591 * 119.99729 * 354.91465 * 6 5 4 8 8 N 1.34771 * 120.00245 * 174.91433 * 6 5 4 9 9 C 1.46504 * 120.00173 * 185.13593 * 8 6 5 10 10 C 1.53039 * 109.46312 * 275.03330 * 9 8 6 11 11 C 1.53189 * 109.30870 * 178.60224 * 10 9 8 12 12 N 1.46928 * 108.77206 * 54.65419 * 11 10 9 13 13 C 1.36929 * 120.62914 * 126.35820 * 12 11 10 14 14 H 1.08007 * 119.99751 * 208.44920 * 13 12 11 15 15 C 1.38810 * 120.00376 * 28.45613 * 13 12 11 16 16 N 1.31613 * 120.00337 * 18.64810 * 15 13 12 17 17 Si 1.86804 * 120.00035 * 198.65497 * 15 13 12 18 18 H 1.48501 * 109.47256 * 94.98169 * 17 15 13 19 19 H 1.48494 * 109.47026 * 214.98608 * 17 15 13 20 20 H 1.48505 * 109.47035 * 334.98421 * 17 15 13 21 21 C 1.46928 * 118.73463 * 306.38676 * 12 11 10 22 22 C 1.53044 * 109.45666 * 154.97426 * 9 8 6 23 23 C 1.46934 * 118.73852 * 53.60717 * 5 4 2 24 24 C 1.53192 * 108.77473 * 306.39237 * 23 5 4 25 25 C 1.53039 * 109.31173 * 54.63398 * 24 23 5 26 26 H 1.09006 * 109.46203 * 58.65737 * 25 24 23 27 27 C 1.50696 * 109.45917 * 178.61182 * 25 24 23 28 28 O 1.20828 * 120.00276 * 120.07170 * 27 25 24 29 29 O 1.34228 * 120.00330 * 300.07086 * 27 25 24 30 30 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47006 * 300.00769 * 1 2 3 32 32 H 1.08998 * 109.46883 * 60.00252 * 1 2 3 33 33 H 1.08999 * 109.58951 * 305.16827 * 4 2 1 34 34 H 1.09004 * 109.58714 * 65.45548 * 4 2 1 35 35 H 0.97006 * 119.99999 * 5.14773 * 8 6 5 36 36 H 1.09003 * 109.45650 * 35.00673 * 9 8 6 37 37 H 1.08997 * 109.49371 * 298.56340 * 10 9 8 38 38 H 1.08990 * 109.49574 * 58.65995 * 10 9 8 39 39 H 1.08998 * 109.59733 * 294.86209 * 11 10 9 40 40 H 1.09008 * 109.70135 * 174.50802 * 11 10 9 41 41 H 0.96995 * 120.00568 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.58181 * 293.81451 * 21 12 11 43 43 H 1.08999 * 109.70043 * 173.46529 * 21 12 11 44 44 H 1.08996 * 109.50028 * 301.33808 * 22 9 8 45 45 H 1.08994 * 109.49591 * 61.41142 * 22 9 8 46 46 H 1.08992 * 109.58409 * 66.18021 * 23 5 4 47 47 H 1.08998 * 109.58683 * 186.46146 * 23 5 4 48 48 H 1.08998 * 109.49373 * 174.58525 * 24 23 5 49 49 H 1.09001 * 109.49905 * 294.65203 * 24 23 5 50 50 H 0.96703 * 117.00241 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2496 5 7 3.5047 -0.8282 -1.1700 6 6 4.2808 -0.3852 -2.1789 7 8 3.7706 0.0214 -3.2049 8 7 5.6224 -0.3928 -2.0505 9 6 6.4620 0.1918 -3.0991 10 6 6.7069 -0.8480 -4.1950 11 6 7.5559 -0.2224 -5.3061 12 7 8.7818 0.3277 -4.7117 13 6 10.0123 -0.0299 -5.1941 14 1 10.8711 -0.0265 -4.5390 15 6 10.1563 -0.3967 -6.5251 16 7 9.2347 -0.0625 -7.4033 17 14 11.6580 -1.3650 -7.0700 18 1 11.3377 -2.8151 -7.0729 19 1 12.0501 -0.9419 -8.4383 20 1 12.7800 -1.1079 -6.1317 21 6 8.6620 1.2683 -3.5893 22 6 7.8005 0.6261 -2.4975 23 6 4.1060 -1.4255 0.0303 24 6 3.5715 -0.6940 1.2656 25 6 2.0415 -0.7228 1.2483 26 1 1.6978 -1.7572 1.2354 27 6 1.5124 -0.0337 2.4796 28 8 0.7996 0.9358 2.3703 29 8 1.8330 -0.4969 3.6980 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6057 -1.7216 -1.2980 34 1 1.7612 -0.1591 -2.1391 35 1 6.0321 -0.7855 -1.2637 36 1 5.9578 1.0584 -3.5269 37 1 7.2333 -1.7041 -3.7730 38 1 5.7521 -1.1742 -4.6068 39 1 6.9939 0.5766 -5.7897 40 1 7.8162 -0.9831 -6.0422 41 1 9.3350 -0.3191 -8.3333 42 1 8.1903 2.1889 -3.9329 43 1 9.6514 1.4917 -3.1900 44 1 7.6239 1.3491 -1.7012 45 1 8.3161 -0.2439 -2.0913 46 1 3.8387 -2.4807 0.0863 47 1 5.1903 -1.3252 -0.0157 48 1 3.9345 -1.1886 2.1666 49 1 3.9165 0.3399 1.2539 50 1 1.4694 -0.0220 4.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:46 Heat of formation + Delta-G solvation = -122.481769 kcal Electronic energy + Delta-G solvation = -30636.828290 eV Core-core repulsion = 26470.440390 eV Total energy + Delta-G solvation = -4166.387899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96735 -41.16248 -39.41963 -38.37602 -37.11490 -36.05697 -34.89037 -33.67636 -33.05633 -31.71145 -31.13026 -28.20620 -27.58223 -26.40285 -23.96995 -23.84942 -23.46916 -23.09913 -21.31062 -21.15443 -20.43526 -19.25450 -18.96424 -18.56650 -17.72094 -17.49413 -16.81975 -16.75473 -16.29153 -15.95132 -15.71449 -15.43712 -15.34924 -15.02942 -14.79849 -14.66620 -14.64483 -14.31695 -14.11019 -13.88636 -13.55573 -13.19762 -13.16473 -13.05872 -12.95054 -12.80827 -12.60908 -12.58439 -12.37789 -12.10322 -12.02720 -11.98358 -11.89051 -11.79296 -11.52864 -11.51543 -11.41294 -11.27590 -11.02502 -10.57337 -10.12342 -9.48846 -8.70878 -7.86801 -5.32762 1.21190 1.48340 1.49736 1.59395 1.61451 2.06577 2.21472 2.52662 2.92676 3.28978 3.46066 3.61323 3.67817 3.89179 3.89389 3.93746 4.11250 4.24382 4.29545 4.34634 4.39262 4.49245 4.55157 4.59094 4.65382 4.68063 4.69303 4.80977 4.81656 4.86243 4.92662 5.04949 5.09497 5.10135 5.12688 5.15930 5.27245 5.29733 5.33058 5.45299 5.56265 5.62115 5.65528 5.69739 5.74417 5.94846 6.39380 7.00867 7.03220 7.13967 7.59960 7.85082 8.38667 9.20507 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.002182 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.518420 B =12830.268646 C =13242.255304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 H 0.056 0.944 4 C 0.136 3.864 5 N -0.629 5.629 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.725 5.725 9 C 0.181 3.819 10 C -0.128 4.128 11 C 0.184 3.816 12 N -0.609 5.609 13 C -0.261 4.261 14 H 0.075 0.925 15 C -0.055 4.055 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.299 1.299 20 H -0.262 1.262 21 C 0.141 3.859 22 C -0.120 4.120 23 C 0.108 3.892 24 C -0.119 4.119 25 C -0.072 4.072 26 H 0.139 0.861 27 C 0.488 3.512 28 O -0.544 6.544 29 O -0.509 6.509 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.043 0.957 39 H -0.013 1.013 40 H 0.052 0.948 41 H 0.249 0.751 42 H 0.009 0.991 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.118 0.882 49 H 0.061 0.939 50 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -5.767 26.506 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 H 0.075 0.925 4 C 0.013 3.987 5 N -0.366 5.366 6 C 0.401 3.599 7 O -0.518 6.518 8 N -0.382 5.382 9 C 0.075 3.925 10 C -0.168 4.168 11 C 0.057 3.943 12 N -0.332 5.332 13 C -0.391 4.391 14 H 0.092 0.908 15 C -0.250 4.250 16 N -0.584 5.584 17 Si 0.797 3.203 18 H -0.214 1.214 19 H -0.226 1.226 20 H -0.187 1.187 21 C 0.015 3.985 22 C -0.159 4.159 23 C -0.014 4.014 24 C -0.157 4.157 25 C -0.091 4.091 26 H 0.156 0.844 27 C 0.332 3.668 28 O -0.434 6.434 29 O -0.322 6.322 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.005 0.995 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.136 0.864 49 H 0.080 0.920 50 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -15.303 -5.424 25.285 30.049 hybrid contribution 0.371 0.181 -0.387 0.566 sum -14.932 -5.243 24.898 29.502 Atomic orbital electron populations 1.22010 0.93233 1.03047 1.03145 1.21280 0.97097 0.98967 0.92809 0.92517 1.21539 0.77844 1.01552 0.97728 1.47368 1.06511 1.64460 1.18278 1.16121 0.82093 0.78396 0.83278 1.90905 1.74162 1.56152 1.30597 1.45272 1.03760 1.64405 1.24779 1.20498 0.90428 0.94451 0.87088 1.22286 0.98367 0.98774 0.97417 1.20439 0.85646 0.95225 0.93003 1.44356 1.02159 1.49605 1.37103 1.19574 0.87813 1.39382 0.92303 0.90760 1.25892 1.00777 1.02505 0.95844 1.70228 1.37898 1.48497 1.01804 0.85228 0.79652 0.78423 0.77019 1.21369 1.22565 1.18664 1.21040 0.98462 0.90945 0.88008 1.22128 0.93574 1.01858 0.98349 1.21936 0.98836 0.98411 0.82215 1.21911 0.91664 1.02247 0.99871 1.21139 0.97776 1.02176 0.88015 0.84378 1.23607 0.76367 0.81341 0.85482 1.90680 1.37014 1.28222 1.87513 1.84490 1.71164 1.59708 1.16878 0.90898 0.91034 0.92756 0.89138 0.91174 0.75211 0.93075 0.91938 0.93865 0.99484 0.93003 0.94212 0.97278 0.91245 0.89146 0.90365 0.88155 0.88614 0.86423 0.92029 0.71207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.86 71.98 0.64 -1.72 16 2 C -0.08 -1.29 2.06 -10.72 -0.02 -1.31 16 3 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 4 C 0.14 2.52 5.70 86.36 0.49 3.01 16 5 N -0.63 -12.52 2.97 -836.91 -2.49 -15.01 16 6 C 0.70 20.85 8.26 179.06 1.48 22.33 16 7 O -0.64 -25.95 15.44 -4.00 -0.06 -26.01 16 8 N -0.73 -19.15 4.99 -457.67 -2.28 -21.43 16 9 C 0.18 6.22 2.38 45.02 0.11 6.32 16 10 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 11 C 0.18 9.41 5.32 86.36 0.46 9.87 16 12 N -0.61 -30.77 2.99 -699.08 -2.09 -32.86 16 13 C -0.26 -14.25 9.57 84.03 0.80 -13.45 16 14 H 0.07 3.86 7.90 -2.91 -0.02 3.84 16 15 C -0.05 -3.11 4.87 84.86 0.41 -2.69 16 16 N -0.94 -57.32 11.33 21.65 0.25 -57.07 16 17 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 C 0.14 5.68 6.51 86.36 0.56 6.25 16 22 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 23 C 0.11 1.09 6.43 86.36 0.56 1.65 16 24 C -0.12 -0.98 5.30 30.67 0.16 -0.82 16 25 C -0.07 -0.73 2.14 -11.51 -0.02 -0.75 16 26 H 0.14 0.73 8.14 -2.38 -0.02 0.71 16 27 C 0.49 6.15 7.33 71.23 0.52 6.67 16 28 O -0.54 -10.85 14.33 21.96 0.31 -10.53 16 29 O -0.51 -3.59 13.30 -51.40 -0.68 -4.27 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.30 5.41 -2.39 -0.01 1.28 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.76 7.04 -2.39 -0.02 1.75 16 35 H 0.41 7.53 6.06 -92.70 -0.56 6.97 16 36 H 0.05 2.09 7.66 -2.39 -0.02 2.07 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.05 2.98 6.13 -2.38 -0.01 2.97 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.10 0.79 5.56 -2.39 -0.01 0.77 16 48 H 0.12 0.43 8.08 -2.39 -0.02 0.41 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.43 0.01 9.10 -74.06 -0.67 -0.66 16 Total: -1.00 -80.82 387.15 1.20 -79.62 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.28 Total: 13.68 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 6.49 Total: 26.85 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -6.62 Total: -126.38 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.43 Total: -40.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -80.82 1.20 -79.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.864 kcal (2) G-P(sol) polarization free energy of solvation -80.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds