Wall clock time and date at job start Tue Mar 31 2020 23:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52893 * 2 1 4 4 C 1.53189 * 109.49570 * 120.08727 * 2 1 3 5 5 N 1.46924 * 108.89726 * 65.38757 * 4 2 1 6 6 C 1.34777 * 120.62874 * 233.51651 * 5 4 2 7 7 O 1.21583 * 120.00177 * 354.92466 * 6 5 4 8 8 N 1.34781 * 119.99927 * 174.92196 * 6 5 4 9 9 C 1.46506 * 119.99849 * 184.71300 * 8 6 5 10 10 C 1.53041 * 109.45501 * 275.06942 * 9 8 6 11 11 C 1.53198 * 109.30656 * 178.61560 * 10 9 8 12 12 N 1.46920 * 108.77581 * 54.63541 * 11 10 9 13 13 C 1.36945 * 120.63270 * 126.36838 * 12 11 10 14 14 H 1.07992 * 120.00141 * 216.72263 * 13 12 11 15 15 C 1.38816 * 119.99652 * 36.71959 * 13 12 11 16 16 N 1.31618 * 120.00113 * 11.46464 * 15 13 12 17 17 Si 1.86796 * 119.99860 * 191.45831 * 15 13 12 18 18 H 1.48507 * 109.47008 * 60.00191 * 17 15 13 19 19 H 1.48497 * 109.47160 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47293 * 300.00403 * 17 15 13 21 21 C 1.46929 * 118.74111 * 306.38724 * 12 11 10 22 22 C 1.53036 * 109.45960 * 155.00265 * 9 8 6 23 23 C 1.46927 * 118.74115 * 53.53179 * 5 4 2 24 24 C 1.53188 * 108.77592 * 306.39805 * 23 5 4 25 25 C 1.53046 * 109.31497 * 54.63222 * 24 23 5 26 26 H 1.09001 * 109.45315 * 58.64221 * 25 24 23 27 27 C 1.50700 * 109.45970 * 178.61330 * 25 24 23 28 28 O 1.20830 * 119.99714 * 119.99886 * 27 25 24 29 29 O 1.34222 * 120.00215 * 300.00085 * 27 25 24 30 30 H 1.08999 * 109.46794 * 299.91601 * 1 2 3 31 31 H 1.09001 * 109.46991 * 59.91414 * 1 2 3 32 32 H 1.08992 * 109.47592 * 179.91620 * 1 2 3 33 33 H 1.08997 * 109.58842 * 305.52540 * 4 2 1 34 34 H 1.09005 * 109.58526 * 185.23837 * 4 2 1 35 35 H 0.96998 * 119.99901 * 4.71324 * 8 6 5 36 36 H 1.08994 * 109.46026 * 35.02893 * 9 8 6 37 37 H 1.08998 * 109.50033 * 298.56298 * 10 9 8 38 38 H 1.09002 * 109.50010 * 58.66759 * 10 9 8 39 39 H 1.09000 * 109.58965 * 294.84461 * 11 10 9 40 40 H 1.09001 * 109.58594 * 174.42253 * 11 10 9 41 41 H 0.97001 * 120.00192 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.58582 * 293.82192 * 21 12 11 43 43 H 1.09003 * 109.58561 * 173.39445 * 21 12 11 44 44 H 1.09004 * 109.49496 * 301.33819 * 22 9 8 45 45 H 1.09002 * 109.49625 * 61.43060 * 22 9 8 46 46 H 1.08995 * 109.58475 * 66.18490 * 23 5 4 47 47 H 1.08999 * 109.58705 * 186.61112 * 23 5 4 48 48 H 1.08998 * 109.49981 * 174.58871 * 24 23 5 49 49 H 1.09007 * 109.49567 * 294.64894 * 24 23 5 50 50 H 0.96700 * 117.00492 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6543 -2.1391 1.1712 6 6 0.9798 -2.7234 2.1812 7 8 0.7663 -2.1064 3.2069 8 7 0.5418 -3.9917 2.0542 9 6 -0.2796 -4.5920 3.1084 10 6 0.6291 -5.1683 4.1967 11 6 -0.2335 -5.7643 5.3137 12 7 -1.1626 -6.7384 4.7250 13 6 -1.2286 -8.0188 5.2063 14 1 -1.3892 -8.8432 4.5275 15 6 -1.0888 -8.2569 6.5667 16 7 -1.1195 -7.2528 7.4172 17 14 -0.8575 -10.0024 7.1904 18 1 0.3746 -10.5810 6.5965 19 1 -0.7341 -9.9870 8.6702 20 1 -2.0293 -10.8269 6.8004 21 6 -2.0195 -6.3128 3.6099 22 6 -1.1369 -5.7107 2.5120 23 6 2.0170 -2.9054 -0.0288 24 6 1.5032 -2.1594 -1.2641 25 6 2.0382 -0.7256 -1.2484 26 1 3.1280 -0.7448 -1.2363 27 6 1.5625 0.0013 -2.4799 28 8 0.8836 0.9948 -2.3706 29 8 1.8931 -0.4550 -3.6982 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6007 -0.2733 2.1388 34 1 3.1273 -0.6444 1.2992 35 1 0.7704 -4.5070 1.2649 36 1 -0.9273 -3.8302 3.5422 37 1 1.2598 -5.9476 3.7690 38 1 1.2559 -4.3754 4.6049 39 1 -0.7979 -4.9703 5.8027 40 1 0.4056 -6.2631 6.0423 41 1 -1.0214 -7.4192 8.3678 42 1 -2.7295 -5.5636 3.9599 43 1 -2.5586 -7.1736 3.2142 44 1 -1.7669 -5.3039 1.7210 45 1 -0.4894 -6.4849 2.1002 46 1 3.1010 -3.0036 -0.0858 47 1 1.5604 -3.8941 0.0172 48 1 1.8483 -2.6666 -2.1651 49 1 0.4134 -2.1418 -1.2513 50 1 1.5644 0.0445 -4.4582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603442863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:50 Heat of formation + Delta-G solvation = -97.904117 kcal Electronic energy + Delta-G solvation = -30885.320558 eV Core-core repulsion = 26719.998426 eV Total energy + Delta-G solvation = -4165.322132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33655 -40.19541 -38.29956 -37.11357 -36.51020 -34.49628 -33.68944 -32.24181 -31.81103 -29.97191 -29.41337 -27.77797 -26.46912 -24.75344 -23.46434 -22.68827 -22.17253 -21.87898 -20.27909 -19.57038 -18.89149 -18.47552 -18.20624 -16.95484 -16.71457 -16.18734 -16.08125 -15.70927 -15.01425 -14.86512 -14.52433 -14.25559 -14.01891 -13.88877 -13.68446 -13.56196 -13.44444 -13.19271 -12.94694 -12.55349 -12.38130 -12.26052 -12.19442 -11.93082 -11.86134 -11.42055 -11.37245 -11.08125 -10.99934 -10.95500 -10.87197 -10.73869 -10.59773 -10.35378 -10.20619 -10.09050 -9.93716 -9.75911 -9.50832 -8.87932 -8.52390 -8.37128 -6.52516 -5.76793 -3.29745 1.76752 2.54598 2.67743 3.35806 3.38785 3.44344 3.45087 3.89713 4.06592 4.20728 4.44084 4.49978 4.61886 4.81949 4.86774 4.94717 5.07938 5.23727 5.25987 5.34685 5.36844 5.43179 5.48013 5.49378 5.57228 5.68410 5.70341 5.82871 5.86195 5.87633 6.03687 6.12628 6.24312 6.28108 6.33815 6.42817 6.48948 6.63766 6.71001 6.81706 6.91971 6.99599 7.08933 7.39676 7.47185 7.68322 7.82420 8.07863 8.53158 8.76159 9.24765 9.84712 10.47201 11.31309 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.002214 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.621988 B =12643.550149 C =12919.716735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.136 3.864 5 N -0.634 5.634 6 C 0.707 3.293 7 O -0.583 6.583 8 N -0.740 5.740 9 C 0.169 3.831 10 C -0.146 4.146 11 C 0.178 3.822 12 N -0.591 5.591 13 C -0.261 4.261 14 H 0.061 0.939 15 C 0.011 3.989 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.149 3.851 22 C -0.138 4.138 23 C 0.115 3.885 24 C -0.130 4.130 25 C -0.073 4.073 26 H 0.111 0.889 27 C 0.482 3.518 28 O -0.507 6.507 29 O -0.517 6.517 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.388 0.612 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 12.933 -22.560 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 H 0.108 0.892 4 C 0.012 3.988 5 N -0.373 5.373 6 C 0.408 3.592 7 O -0.460 6.460 8 N -0.396 5.396 9 C 0.065 3.935 10 C -0.187 4.187 11 C 0.052 3.948 12 N -0.314 5.314 13 C -0.391 4.391 14 H 0.078 0.922 15 C -0.189 4.189 16 N -0.541 5.541 17 Si 0.732 3.268 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.022 3.978 22 C -0.178 4.178 23 C -0.009 4.009 24 C -0.168 4.168 25 C -0.093 4.093 26 H 0.129 0.871 27 C 0.325 3.675 28 O -0.395 6.395 29 O -0.329 6.329 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.224 0.776 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.306 13.417 -21.189 26.419 hybrid contribution 0.137 -0.761 -0.660 1.017 sum 8.443 12.656 -21.849 26.624 Atomic orbital electron populations 1.22028 0.93828 1.02251 1.03178 1.21444 0.97927 0.99374 0.92235 0.89153 1.21468 0.99206 0.79764 0.98351 1.47262 1.60606 1.11287 1.18105 1.15882 0.78319 0.81939 0.83021 1.90928 1.62647 1.64369 1.28103 1.45715 1.56679 1.12599 1.24578 1.20895 0.91388 0.94420 0.86759 1.22571 0.98860 0.99194 0.98068 1.20663 0.90955 0.91284 0.91889 1.43986 1.40690 1.09589 1.37095 1.19030 1.46718 0.83498 0.89883 0.92186 1.25313 1.00132 0.97079 0.96389 1.69988 1.52426 1.29895 1.01758 0.86387 0.78258 0.84540 0.77581 1.20928 1.21611 1.20777 1.20853 0.91686 0.96941 0.88314 1.22349 0.98967 0.97144 0.99374 1.21569 1.00463 0.94942 0.83921 1.21997 1.02457 0.93025 0.99315 1.21093 1.02709 0.95975 0.89482 0.87115 1.23530 0.76638 0.82690 0.84690 1.90696 1.35792 1.25945 1.87047 1.84537 1.72892 1.58512 1.16960 0.92280 0.90852 0.92611 0.88050 0.91630 0.77618 0.90207 0.92906 0.92730 0.95950 0.90452 0.93470 0.96218 0.92369 0.92782 0.92019 0.90868 0.89726 0.89290 0.90237 0.73190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.40 37.16 0.31 -1.27 16 2 C -0.09 -0.74 2.37 -90.48 -0.21 -0.95 16 3 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 4 C 0.14 1.28 5.81 -3.71 -0.02 1.26 16 5 N -0.63 -6.71 2.42 -178.50 -0.43 -7.14 16 6 C 0.71 10.60 8.26 -86.91 -0.72 9.88 16 7 O -0.58 -11.37 15.45 5.29 0.08 -11.29 16 8 N -0.74 -10.40 4.99 -58.63 -0.29 -10.69 16 9 C 0.17 2.96 2.38 -67.89 -0.16 2.80 16 10 C -0.15 -2.94 5.65 -26.61 -0.15 -3.10 16 11 C 0.18 4.37 5.23 -3.71 -0.02 4.35 16 12 N -0.59 -14.81 2.95 -172.32 -0.51 -15.32 16 13 C -0.26 -7.15 9.51 -15.05 -0.14 -7.29 16 14 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 15 C 0.01 0.31 5.00 -17.43 -0.09 0.22 16 16 N -0.90 -26.41 11.52 55.49 0.64 -25.77 16 17 Si 0.90 21.64 29.57 -169.99 -5.03 16.61 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 22 C -0.14 -2.29 5.55 -26.61 -0.15 -2.43 16 23 C 0.11 0.80 6.43 -3.71 -0.02 0.77 16 24 C -0.13 -0.77 4.96 -26.61 -0.13 -0.90 16 25 C -0.07 -0.47 2.36 -91.71 -0.22 -0.69 16 26 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.48 3.60 7.34 36.01 0.26 3.87 16 28 O -0.51 -5.32 14.50 -18.75 -0.27 -5.60 16 29 O -0.52 -2.69 13.30 -39.24 -0.52 -3.21 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.80 5.63 -51.93 -0.29 0.50 16 32 H 0.05 0.60 5.97 -51.93 -0.31 0.29 16 33 H 0.10 1.20 7.03 -51.93 -0.37 0.83 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.39 4.28 6.06 -40.82 -0.25 4.03 16 36 H 0.08 1.59 7.65 -51.93 -0.40 1.20 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 2.10 6.56 -51.93 -0.34 1.76 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.54 5.56 -51.93 -0.29 0.25 16 48 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 49 H 0.08 0.58 6.34 -51.93 -0.33 0.25 16 50 H 0.41 0.62 9.10 45.56 0.41 1.04 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -34.87 383.33 -9.22 -44.09 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.18 Total: 2.96 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -1.48 Total: 9.59 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.59 Total: -58.92 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.71 Total: -20.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.87 -9.22 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.811 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds