Wall clock time and date at job start Tue Mar 31 2020 23:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52893 * 2 1 4 4 C 1.53189 * 109.49570 * 120.08727 * 2 1 3 5 5 N 1.46924 * 108.89726 * 65.38757 * 4 2 1 6 6 C 1.34777 * 120.62874 * 233.51651 * 5 4 2 7 7 O 1.21583 * 120.00177 * 354.92466 * 6 5 4 8 8 N 1.34781 * 119.99927 * 174.92196 * 6 5 4 9 9 C 1.46506 * 119.99849 * 184.71300 * 8 6 5 10 10 C 1.53041 * 109.45501 * 275.06942 * 9 8 6 11 11 C 1.53198 * 109.30656 * 178.61560 * 10 9 8 12 12 N 1.46920 * 108.77581 * 54.63541 * 11 10 9 13 13 C 1.36945 * 120.63270 * 126.36838 * 12 11 10 14 14 H 1.07992 * 120.00141 * 216.72263 * 13 12 11 15 15 C 1.38816 * 119.99652 * 36.71959 * 13 12 11 16 16 N 1.31618 * 120.00113 * 11.46464 * 15 13 12 17 17 Si 1.86796 * 119.99860 * 191.45831 * 15 13 12 18 18 H 1.48507 * 109.47008 * 60.00191 * 17 15 13 19 19 H 1.48497 * 109.47160 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47293 * 300.00403 * 17 15 13 21 21 C 1.46929 * 118.74111 * 306.38724 * 12 11 10 22 22 C 1.53036 * 109.45960 * 155.00265 * 9 8 6 23 23 C 1.46927 * 118.74115 * 53.53179 * 5 4 2 24 24 C 1.53188 * 108.77592 * 306.39805 * 23 5 4 25 25 C 1.53046 * 109.31497 * 54.63222 * 24 23 5 26 26 H 1.09001 * 109.45315 * 58.64221 * 25 24 23 27 27 C 1.50700 * 109.45970 * 178.61330 * 25 24 23 28 28 O 1.20830 * 119.99714 * 119.99886 * 27 25 24 29 29 O 1.34222 * 120.00215 * 300.00085 * 27 25 24 30 30 H 1.08999 * 109.46794 * 299.91601 * 1 2 3 31 31 H 1.09001 * 109.46991 * 59.91414 * 1 2 3 32 32 H 1.08992 * 109.47592 * 179.91620 * 1 2 3 33 33 H 1.08997 * 109.58842 * 305.52540 * 4 2 1 34 34 H 1.09005 * 109.58526 * 185.23837 * 4 2 1 35 35 H 0.96998 * 119.99901 * 4.71324 * 8 6 5 36 36 H 1.08994 * 109.46026 * 35.02893 * 9 8 6 37 37 H 1.08998 * 109.50033 * 298.56298 * 10 9 8 38 38 H 1.09002 * 109.50010 * 58.66759 * 10 9 8 39 39 H 1.09000 * 109.58965 * 294.84461 * 11 10 9 40 40 H 1.09001 * 109.58594 * 174.42253 * 11 10 9 41 41 H 0.97001 * 120.00192 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.58582 * 293.82192 * 21 12 11 43 43 H 1.09003 * 109.58561 * 173.39445 * 21 12 11 44 44 H 1.09004 * 109.49496 * 301.33819 * 22 9 8 45 45 H 1.09002 * 109.49625 * 61.43060 * 22 9 8 46 46 H 1.08995 * 109.58475 * 66.18490 * 23 5 4 47 47 H 1.08999 * 109.58705 * 186.61112 * 23 5 4 48 48 H 1.08998 * 109.49981 * 174.58871 * 24 23 5 49 49 H 1.09007 * 109.49567 * 294.64894 * 24 23 5 50 50 H 0.96700 * 117.00492 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 1.6543 -2.1391 1.1712 6 6 0.9798 -2.7234 2.1812 7 8 0.7663 -2.1064 3.2069 8 7 0.5418 -3.9917 2.0542 9 6 -0.2796 -4.5920 3.1084 10 6 0.6291 -5.1683 4.1967 11 6 -0.2335 -5.7643 5.3137 12 7 -1.1626 -6.7384 4.7250 13 6 -1.2286 -8.0188 5.2063 14 1 -1.3892 -8.8432 4.5275 15 6 -1.0888 -8.2569 6.5667 16 7 -1.1195 -7.2528 7.4172 17 14 -0.8575 -10.0024 7.1904 18 1 0.3746 -10.5810 6.5965 19 1 -0.7341 -9.9870 8.6702 20 1 -2.0293 -10.8269 6.8004 21 6 -2.0195 -6.3128 3.6099 22 6 -1.1369 -5.7107 2.5120 23 6 2.0170 -2.9054 -0.0288 24 6 1.5032 -2.1594 -1.2641 25 6 2.0382 -0.7256 -1.2484 26 1 3.1280 -0.7448 -1.2363 27 6 1.5625 0.0013 -2.4799 28 8 0.8836 0.9948 -2.3706 29 8 1.8931 -0.4550 -3.6982 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6007 -0.2733 2.1388 34 1 3.1273 -0.6444 1.2992 35 1 0.7704 -4.5070 1.2649 36 1 -0.9273 -3.8302 3.5422 37 1 1.2598 -5.9476 3.7690 38 1 1.2559 -4.3754 4.6049 39 1 -0.7979 -4.9703 5.8027 40 1 0.4056 -6.2631 6.0423 41 1 -1.0214 -7.4192 8.3678 42 1 -2.7295 -5.5636 3.9599 43 1 -2.5586 -7.1736 3.2142 44 1 -1.7669 -5.3039 1.7210 45 1 -0.4894 -6.4849 2.1002 46 1 3.1010 -3.0036 -0.0858 47 1 1.5604 -3.8941 0.0172 48 1 1.8483 -2.6666 -2.1651 49 1 0.4134 -2.1418 -1.2513 50 1 1.5644 0.0445 -4.4582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:49 Heat of formation + Delta-G solvation = -121.891326 kcal Electronic energy + Delta-G solvation = -30886.360721 eV Core-core repulsion = 26719.998426 eV Total energy + Delta-G solvation = -4166.362296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03846 -41.12713 -39.44965 -38.40538 -37.07891 -36.01966 -34.74584 -33.65231 -32.75519 -31.68825 -31.09733 -28.46235 -27.56375 -26.44478 -24.08790 -23.89838 -23.78208 -23.01799 -21.32446 -21.12458 -19.75868 -19.27566 -18.97616 -18.57995 -17.56807 -17.33583 -16.81494 -16.73877 -16.51577 -15.99706 -15.61906 -15.41746 -15.34863 -15.14759 -14.85120 -14.69195 -14.48994 -14.44772 -14.10581 -13.89665 -13.79411 -13.16869 -12.99723 -12.98261 -12.86167 -12.72218 -12.61538 -12.57736 -12.42880 -12.12911 -12.04815 -12.01926 -11.87814 -11.61241 -11.56760 -11.53410 -11.38049 -11.29129 -11.01440 -10.57008 -10.10099 -9.44750 -8.57592 -7.86425 -5.43641 1.23309 1.48122 1.50449 1.57420 1.64468 2.09577 2.24619 2.51616 2.95328 3.30456 3.47854 3.63170 3.69694 3.90128 3.95032 3.95259 4.12154 4.17761 4.33975 4.36242 4.37893 4.50265 4.56718 4.61527 4.68609 4.70364 4.71496 4.83108 4.85079 4.88537 4.89373 5.05824 5.08943 5.10891 5.13035 5.16111 5.17680 5.34351 5.35036 5.43320 5.59610 5.64230 5.66795 5.67705 5.72424 5.97495 6.44269 7.03848 7.04420 7.16321 7.63498 7.83449 8.41651 9.19741 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.002214 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.621988 B =12643.550149 C =12919.716735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.094 0.906 4 C 0.135 3.865 5 N -0.625 5.625 6 C 0.701 3.299 7 O -0.637 6.637 8 N -0.726 5.726 9 C 0.182 3.818 10 C -0.128 4.128 11 C 0.188 3.812 12 N -0.608 5.608 13 C -0.268 4.268 14 H 0.070 0.930 15 C -0.048 4.048 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.274 1.274 19 H -0.297 1.297 20 H -0.271 1.271 21 C 0.142 3.858 22 C -0.120 4.120 23 C 0.109 3.891 24 C -0.122 4.122 25 C -0.071 4.071 26 H 0.140 0.860 27 C 0.488 3.512 28 O -0.545 6.545 29 O -0.510 6.510 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.043 0.957 39 H -0.012 1.012 40 H 0.043 0.957 41 H 0.250 0.750 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.115 0.885 49 H 0.064 0.936 50 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 11.662 -26.280 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.113 0.887 4 C 0.012 3.988 5 N -0.362 5.362 6 C 0.403 3.597 7 O -0.518 6.518 8 N -0.383 5.383 9 C 0.076 3.924 10 C -0.169 4.169 11 C 0.062 3.938 12 N -0.331 5.331 13 C -0.398 4.398 14 H 0.087 0.913 15 C -0.244 4.244 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.224 1.224 20 H -0.197 1.197 21 C 0.016 3.984 22 C -0.159 4.159 23 C -0.013 4.013 24 C -0.160 4.160 25 C -0.090 4.090 26 H 0.158 0.842 27 C 0.332 3.668 28 O -0.435 6.435 29 O -0.323 6.323 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.006 0.994 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.133 0.867 49 H 0.083 0.917 50 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.965 12.133 -25.041 29.556 hybrid contribution -0.385 -0.291 0.407 0.632 sum 9.579 11.841 -24.634 28.962 Atomic orbital electron populations 1.21955 0.95653 1.01283 1.01866 1.21333 0.96233 0.99844 0.92827 0.88735 1.21534 1.00481 0.79075 0.97747 1.47291 1.59014 1.11798 1.18113 1.16087 0.78477 0.81883 0.83287 1.90903 1.64650 1.65556 1.30674 1.45277 1.56165 1.12598 1.24287 1.20466 0.90878 0.93998 0.87018 1.22299 0.98325 0.98786 0.97460 1.20362 0.90642 0.90077 0.92741 1.44232 1.41751 1.09096 1.38065 1.19442 1.45453 0.84745 0.90201 0.91274 1.26148 1.00534 1.00945 0.96744 1.70173 1.54269 1.32100 1.01620 0.85304 0.78624 0.79901 0.76339 1.19959 1.22382 1.19679 1.21041 0.91950 0.97249 0.88120 1.22128 0.98659 0.96776 0.98340 1.21917 1.02281 0.94840 0.82290 1.21955 1.01563 0.92664 0.99807 1.21103 1.04283 0.95690 0.87928 0.84242 1.23635 0.75709 0.81989 0.85490 1.90699 1.37556 1.27690 1.87601 1.84489 1.72460 1.58444 1.16912 0.94186 0.91488 0.93362 0.91154 0.88990 0.75277 0.93146 0.91937 0.93849 0.99412 0.93862 0.94119 0.97447 0.91395 0.89257 0.90427 0.88148 0.88784 0.86653 0.91698 0.71254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.40 71.98 0.60 -2.45 16 2 C -0.08 -1.23 2.37 -10.70 -0.03 -1.26 16 3 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 4 C 0.13 2.38 5.81 86.36 0.50 2.88 16 5 N -0.62 -12.01 2.42 -836.93 -2.03 -14.03 16 6 C 0.70 20.53 8.26 179.05 1.48 22.00 16 7 O -0.64 -25.63 15.45 -3.98 -0.06 -25.69 16 8 N -0.73 -19.05 4.99 -457.68 -2.28 -21.33 16 9 C 0.18 6.26 2.38 45.02 0.11 6.36 16 10 C -0.13 -5.22 5.65 30.67 0.17 -5.05 16 11 C 0.19 9.65 5.23 86.37 0.45 10.11 16 12 N -0.61 -30.89 2.95 -699.09 -2.06 -32.95 16 13 C -0.27 -14.71 9.51 84.03 0.80 -13.91 16 14 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 15 C -0.05 -2.70 5.00 84.86 0.42 -2.27 16 16 N -0.94 -57.25 11.52 21.65 0.25 -57.00 16 17 Si 0.97 44.89 29.57 68.60 2.03 46.92 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 C 0.14 5.80 6.52 86.36 0.56 6.36 16 22 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 23 C 0.11 1.06 6.43 86.36 0.56 1.62 16 24 C -0.12 -0.97 4.96 30.67 0.15 -0.82 16 25 C -0.07 -0.67 2.36 -11.50 -0.03 -0.70 16 26 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 27 C 0.49 5.99 7.34 71.24 0.52 6.51 16 28 O -0.54 -10.73 14.50 21.95 0.32 -10.41 16 29 O -0.51 -3.54 13.30 -51.34 -0.68 -4.22 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.46 5.63 -2.39 -0.01 1.45 16 32 H 0.05 1.03 5.97 -2.39 -0.01 1.01 16 33 H 0.07 1.72 7.03 -2.39 -0.02 1.71 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.41 7.50 6.06 -92.71 -0.56 6.94 16 36 H 0.05 2.07 7.65 -2.39 -0.02 2.05 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H 0.04 2.47 6.56 -2.39 -0.02 2.46 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 44 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.09 0.76 5.56 -2.39 -0.01 0.75 16 48 H 0.12 0.42 8.08 -2.39 -0.02 0.40 16 49 H 0.06 0.75 6.34 -2.38 -0.02 0.74 16 50 H 0.43 0.01 9.10 -74.06 -0.67 -0.66 16 Total: -1.00 -80.70 383.33 1.66 -79.03 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -0.27 Total: 13.79 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.45 Total: 25.89 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.12 Total: -125.32 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.43 Total: -40.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -80.70 1.66 -79.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.858 kcal (2) G-P(sol) polarization free energy of solvation -80.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds