Wall clock time and date at job start Tue Mar 31 2020 23:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47770 * 2 1 4 4 C 1.53095 * 109.47349 * 239.97727 * 2 1 3 5 5 C 1.53186 * 109.15838 * 182.40792 * 4 2 1 6 6 H 1.09002 * 109.54064 * 176.94083 * 5 4 2 7 7 C 1.50701 * 109.54232 * 297.11261 * 5 4 2 8 8 O 1.21285 * 120.00205 * 359.82528 * 7 5 4 9 9 N 1.34775 * 119.99659 * 179.81957 * 7 5 4 10 10 C 1.46505 * 119.99975 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99788 * 127.15932 * 11 10 9 13 13 C 1.50694 * 120.00327 * 7.55710 * 12 11 10 14 14 N 1.46902 * 109.47029 * 127.00752 * 13 12 11 15 15 C 1.46902 * 110.99711 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46740 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00606 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99723 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99793 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99858 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00301 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99750 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47171 * 90.00263 * 23 21 19 25 25 H 1.48496 * 109.46967 * 210.00306 * 23 21 19 26 26 H 1.48494 * 109.47076 * 329.99931 * 23 21 19 27 27 C 1.53175 * 109.10667 * 57.02669 * 5 4 2 28 28 C 1.53281 * 109.06367 * 303.05396 * 27 5 4 29 29 O 1.42899 * 109.45869 * 57.56303 * 28 27 5 30 30 H 1.09001 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46673 * 300.02094 * 1 2 3 32 32 H 1.09002 * 109.47508 * 60.01648 * 1 2 3 33 33 H 1.09001 * 109.52346 * 62.50917 * 4 2 1 34 34 H 1.08994 * 109.57624 * 302.34290 * 4 2 1 35 35 H 0.97001 * 120.00413 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.46678 * 60.00460 * 10 9 7 37 37 H 1.08994 * 109.47048 * 300.00654 * 10 9 7 38 38 H 1.07997 * 120.00206 * 307.15610 * 11 10 9 39 39 H 1.07999 * 119.99664 * 187.55646 * 12 11 10 40 40 H 1.09002 * 109.47093 * 247.00999 * 13 12 11 41 41 H 1.09003 * 109.46867 * 7.01194 * 13 12 11 42 42 H 1.00891 * 111.00010 * 303.95439 * 14 13 12 43 43 H 1.08993 * 109.47396 * 300.00195 * 15 14 13 44 44 H 1.09004 * 109.47111 * 60.00543 * 15 14 13 45 45 H 0.96995 * 120.00259 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99930 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.52453 * 62.88071 * 27 5 4 48 48 H 1.09006 * 109.51933 * 183.06728 * 27 5 4 49 49 H 1.08996 * 109.46185 * 297.55868 * 28 27 5 50 50 H 1.09001 * 109.46425 * 177.55703 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7222 -1.2497 5 6 3.5710 -0.7708 -1.2124 6 1 3.9391 -1.3311 -2.0719 7 6 4.1211 0.6317 -1.2519 8 8 3.3649 1.5783 -1.3079 9 7 5.4533 0.8340 -1.2248 10 6 5.9881 2.1974 -1.2627 11 6 7.4936 2.1478 -1.2222 12 6 8.1945 2.7765 -2.1331 13 6 7.5067 3.6863 -3.1180 14 7 8.1534 5.0051 -3.1006 15 6 7.5081 5.9204 -4.0513 16 6 8.1967 7.2601 -4.0049 17 8 9.1331 7.4351 -3.2542 18 7 7.7725 8.2636 -4.7985 19 6 8.3993 9.4822 -4.7567 20 1 9.2331 9.6380 -4.0882 21 6 7.9617 10.5169 -5.5744 22 7 6.9468 10.3275 -6.3874 23 14 8.8161 12.1772 -5.5179 24 1 9.9243 12.1974 -6.5060 25 1 7.8405 13.2473 -5.8464 26 1 9.3626 12.4066 -4.1564 27 6 4.0194 -1.4609 0.0795 28 6 3.4308 -0.7095 1.2788 29 8 2.0066 -0.6744 1.1663 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5136 -0.8901 33 1 1.7147 -0.1841 -2.1399 34 1 1.6442 -1.7373 -1.2723 35 1 6.0581 0.0769 -1.1803 36 1 5.6193 2.7563 -0.4025 37 1 5.6656 2.6888 -2.1806 38 1 7.9949 1.5940 -0.4422 39 1 9.2652 2.6427 -2.1781 40 1 7.5786 3.2594 -4.1184 41 1 6.4573 3.7925 -2.8429 42 1 8.1569 5.3938 -2.1696 43 1 7.5805 5.5090 -5.0580 44 1 6.4586 6.0423 -3.7831 45 1 7.0239 8.1236 -5.3991 46 1 6.6416 11.0497 -6.9585 47 1 3.6630 -2.4910 0.0849 48 1 5.1078 -1.4508 0.1391 49 1 3.8193 0.3087 1.2957 50 1 3.7100 -1.2205 2.2003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669107246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:55 Heat of formation + Delta-G solvation = -104.824941 kcal Electronic energy + Delta-G solvation = -28698.809935 eV Core-core repulsion = 24533.187693 eV Total energy + Delta-G solvation = -4165.622242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06773 -38.79614 -38.33025 -37.07299 -35.14962 -34.24789 -33.88057 -33.19617 -32.58981 -31.20523 -28.39484 -28.06102 -26.55486 -24.92168 -24.46552 -23.17537 -23.08357 -21.82182 -20.27569 -19.40808 -18.69080 -17.87170 -17.12768 -17.01516 -16.64815 -16.48653 -16.01528 -15.78349 -15.47775 -15.12472 -14.66066 -14.52411 -14.46512 -14.30817 -14.14205 -13.71483 -13.54850 -13.31880 -13.18518 -12.95207 -12.76674 -12.59261 -12.39983 -12.28576 -12.22794 -11.80493 -11.64505 -11.50510 -11.47331 -11.19079 -11.09536 -10.97523 -10.84769 -10.39031 -10.21759 -10.20973 -9.67730 -9.60698 -9.50828 -9.17838 -8.46684 -8.07061 -7.95802 -6.41272 -3.82209 1.72252 2.25598 2.95796 3.18417 3.26972 3.32925 3.43736 3.90746 4.08939 4.12353 4.19440 4.27899 4.36311 4.48997 4.53740 4.67352 4.79294 4.80860 4.97207 5.01711 5.04886 5.13551 5.15193 5.23276 5.25116 5.30900 5.33931 5.37448 5.47840 5.51458 5.55472 5.59576 5.61787 5.69106 5.80675 5.83376 5.89741 5.96453 6.05804 6.25275 6.31148 6.47336 6.92395 7.11012 7.15839 7.55628 7.62128 7.85534 8.06463 8.61419 9.18055 9.54417 10.05715 10.76443 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001621 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.029549 B =17269.165798 C =18252.563649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.113 4.113 6 H 0.103 0.897 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.724 5.724 10 C 0.137 3.863 11 C -0.193 4.193 12 C -0.107 4.107 13 C 0.069 3.931 14 N -0.664 5.664 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.147 4.147 28 C 0.060 3.940 29 O -0.381 6.381 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.351 0.649 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.048 0.952 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 -28.027 10.772 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.134 4.134 6 H 0.121 0.879 7 C 0.299 3.701 8 O -0.410 6.410 9 N -0.375 5.375 10 C 0.015 3.985 11 C -0.212 4.212 12 C -0.126 4.126 13 C -0.060 4.060 14 N -0.296 5.296 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.185 4.185 28 C -0.017 4.017 29 O -0.301 6.301 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.170 0.830 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.226 0.774 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.753 -27.305 10.788 30.636 hybrid contribution -0.217 0.648 -0.251 0.728 sum -8.970 -26.657 10.538 30.035 Atomic orbital electron populations 1.21740 0.93154 1.02471 1.02601 1.22394 0.95089 0.96879 0.84005 0.89778 1.22017 0.92583 1.01951 1.00069 1.21446 0.97905 0.93670 1.00386 0.87944 1.20647 0.82157 0.91427 0.75823 1.90693 1.57436 1.43969 1.48862 1.46029 1.06842 1.09222 1.75436 1.20553 0.91338 0.83367 1.03273 1.22755 0.94259 1.04445 0.99753 1.22974 1.00722 0.94937 0.93985 1.21271 0.95421 0.90070 0.99191 1.60036 1.55443 1.01635 1.12521 1.21693 0.95843 0.93054 0.97690 1.19779 0.87189 0.85421 0.85004 1.90519 1.30784 1.82881 1.42588 1.41863 1.31273 1.10496 1.36352 1.19708 1.14272 0.87095 1.21855 0.87898 1.25273 0.96611 1.00080 0.96020 1.69612 1.25809 1.34146 1.24708 0.85844 0.78649 0.80878 0.78838 1.20384 1.20934 1.19425 1.22239 1.01327 1.00850 0.94037 1.22561 0.81747 0.99494 0.97942 1.87910 1.20294 1.78202 1.43648 0.92170 0.91922 0.90970 0.89997 0.90454 0.76553 0.90944 0.89865 0.86371 0.85838 0.90127 0.94022 0.82961 0.89509 0.93744 0.77432 0.91858 0.89673 0.90371 0.93335 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.56 37.16 0.36 -0.76 16 2 C 0.07 0.68 2.98 -26.68 -0.08 0.60 16 3 H 0.08 0.98 5.81 -51.93 -0.30 0.68 16 4 C -0.13 -0.97 4.56 -26.59 -0.12 -1.09 16 5 C -0.11 -0.73 3.04 -91.58 -0.28 -1.00 16 6 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 7 C 0.51 4.70 5.82 -10.99 -0.06 4.64 16 8 O -0.53 -7.00 13.85 5.55 0.08 -6.92 16 9 N -0.72 -5.30 5.43 -61.47 -0.33 -5.64 16 10 C 0.14 1.24 5.76 -5.19 -0.03 1.21 16 11 C -0.19 -1.55 9.63 -36.03 -0.35 -1.90 16 12 C -0.11 -1.05 9.77 -36.03 -0.35 -1.40 16 13 C 0.07 0.83 5.77 -4.98 -0.03 0.80 16 14 N -0.66 -10.72 6.11 -116.34 -0.71 -11.43 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 17 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 18 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 23 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.15 -0.74 5.58 -26.50 -0.15 -0.88 16 28 C 0.06 0.43 6.62 37.30 0.25 0.68 16 29 O -0.38 -3.70 10.41 -35.23 -0.37 -4.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.40 1.83 7.86 -40.82 -0.32 1.51 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.88 5.30 -51.93 -0.28 0.61 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.49 5.30 -51.93 -0.27 0.21 16 42 H 0.35 5.90 8.42 -39.30 -0.33 5.57 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.24 7.51 -51.93 -0.39 -0.15 16 49 H 0.05 0.41 7.38 -51.93 -0.38 0.02 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -33.99 403.67 -8.75 -42.74 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.02 Total: 13.41 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.20 Total: 4.11 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.38 Total: -55.62 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.20 Total: -26.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.99 -8.75 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.088 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds