Wall clock time and date at job start Tue Mar 31 2020 23:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47770 * 2 1 4 4 C 1.53095 * 109.47349 * 239.97727 * 2 1 3 5 5 C 1.53186 * 109.15838 * 182.40792 * 4 2 1 6 6 H 1.09002 * 109.54064 * 176.94083 * 5 4 2 7 7 C 1.50701 * 109.54232 * 297.11261 * 5 4 2 8 8 O 1.21285 * 120.00205 * 359.82528 * 7 5 4 9 9 N 1.34775 * 119.99659 * 179.81957 * 7 5 4 10 10 C 1.46505 * 119.99975 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.31002 * 119.99788 * 127.15932 * 11 10 9 13 13 C 1.50694 * 120.00327 * 7.55710 * 12 11 10 14 14 N 1.46902 * 109.47029 * 127.00752 * 13 12 11 15 15 C 1.46902 * 110.99711 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46740 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00606 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99723 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99793 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99858 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00301 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99750 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47171 * 90.00263 * 23 21 19 25 25 H 1.48496 * 109.46967 * 210.00306 * 23 21 19 26 26 H 1.48494 * 109.47076 * 329.99931 * 23 21 19 27 27 C 1.53175 * 109.10667 * 57.02669 * 5 4 2 28 28 C 1.53281 * 109.06367 * 303.05396 * 27 5 4 29 29 O 1.42899 * 109.45869 * 57.56303 * 28 27 5 30 30 H 1.09001 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46673 * 300.02094 * 1 2 3 32 32 H 1.09002 * 109.47508 * 60.01648 * 1 2 3 33 33 H 1.09001 * 109.52346 * 62.50917 * 4 2 1 34 34 H 1.08994 * 109.57624 * 302.34290 * 4 2 1 35 35 H 0.97001 * 120.00413 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.46678 * 60.00460 * 10 9 7 37 37 H 1.08994 * 109.47048 * 300.00654 * 10 9 7 38 38 H 1.07997 * 120.00206 * 307.15610 * 11 10 9 39 39 H 1.07999 * 119.99664 * 187.55646 * 12 11 10 40 40 H 1.09002 * 109.47093 * 247.00999 * 13 12 11 41 41 H 1.09003 * 109.46867 * 7.01194 * 13 12 11 42 42 H 1.00891 * 111.00010 * 303.95439 * 14 13 12 43 43 H 1.08993 * 109.47396 * 300.00195 * 15 14 13 44 44 H 1.09004 * 109.47111 * 60.00543 * 15 14 13 45 45 H 0.96995 * 120.00259 * 0.02562 * 18 16 15 46 46 H 0.96997 * 119.99930 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.52453 * 62.88071 * 27 5 4 48 48 H 1.09006 * 109.51933 * 183.06728 * 27 5 4 49 49 H 1.08996 * 109.46185 * 297.55868 * 28 27 5 50 50 H 1.09001 * 109.46425 * 177.55703 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7222 -1.2497 5 6 3.5710 -0.7708 -1.2124 6 1 3.9391 -1.3311 -2.0719 7 6 4.1211 0.6317 -1.2519 8 8 3.3649 1.5783 -1.3079 9 7 5.4533 0.8340 -1.2248 10 6 5.9881 2.1974 -1.2627 11 6 7.4936 2.1478 -1.2222 12 6 8.1945 2.7765 -2.1331 13 6 7.5067 3.6863 -3.1180 14 7 8.1534 5.0051 -3.1006 15 6 7.5081 5.9204 -4.0513 16 6 8.1967 7.2601 -4.0049 17 8 9.1331 7.4351 -3.2542 18 7 7.7725 8.2636 -4.7985 19 6 8.3993 9.4822 -4.7567 20 1 9.2331 9.6380 -4.0882 21 6 7.9617 10.5169 -5.5744 22 7 6.9468 10.3275 -6.3874 23 14 8.8161 12.1772 -5.5179 24 1 9.9243 12.1974 -6.5060 25 1 7.8405 13.2473 -5.8464 26 1 9.3626 12.4066 -4.1564 27 6 4.0194 -1.4609 0.0795 28 6 3.4308 -0.7095 1.2788 29 8 2.0066 -0.6744 1.1663 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5136 -0.8901 33 1 1.7147 -0.1841 -2.1399 34 1 1.6442 -1.7373 -1.2723 35 1 6.0581 0.0769 -1.1803 36 1 5.6193 2.7563 -0.4025 37 1 5.6656 2.6888 -2.1806 38 1 7.9949 1.5940 -0.4422 39 1 9.2652 2.6427 -2.1781 40 1 7.5786 3.2594 -4.1184 41 1 6.4573 3.7925 -2.8429 42 1 8.1569 5.3938 -2.1696 43 1 7.5805 5.5090 -5.0580 44 1 6.4586 6.0423 -3.7831 45 1 7.0239 8.1236 -5.3991 46 1 6.6416 11.0497 -6.9585 47 1 3.6630 -2.4910 0.0849 48 1 5.1078 -1.4508 0.1391 49 1 3.8193 0.3087 1.2957 50 1 3.7100 -1.2205 2.2003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669107246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:54 Heat of formation + Delta-G solvation = -131.539129 kcal Electronic energy + Delta-G solvation = -28699.968349 eV Core-core repulsion = 24533.187693 eV Total energy + Delta-G solvation = -4166.780656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72123 -40.20922 -39.44959 -38.07662 -36.29218 -35.78874 -34.85915 -33.96230 -33.41749 -33.21107 -29.39911 -28.85523 -27.63979 -26.43687 -25.17494 -24.49509 -23.66228 -22.49325 -21.21879 -20.92258 -19.98905 -19.47627 -18.15088 -17.72021 -17.42443 -17.28910 -17.09488 -16.73696 -16.64060 -16.41828 -16.06079 -15.85524 -15.35828 -15.23977 -14.98743 -14.91643 -14.79703 -14.61950 -14.04004 -13.76795 -13.56743 -13.50604 -13.34778 -13.30270 -13.18209 -12.94610 -12.89258 -12.81385 -12.69836 -12.43556 -12.12978 -12.06419 -11.87213 -11.71826 -11.52738 -11.51377 -10.88020 -10.40756 -10.39165 -10.26966 -10.04185 -9.92396 -9.34277 -8.48455 -5.97695 0.98791 1.37172 1.40915 1.54019 1.57472 2.01901 2.27393 2.31965 2.84249 2.97852 3.18449 3.51738 3.55192 3.69633 3.77333 3.79130 3.95224 4.03630 4.12101 4.15355 4.27059 4.28014 4.39916 4.41595 4.48828 4.51472 4.52511 4.66420 4.68165 4.70691 4.74333 4.79547 4.84813 4.94951 4.99880 5.03836 5.08495 5.20826 5.26109 5.38273 5.39209 5.56234 5.70343 5.85161 6.05783 6.29518 6.35317 6.52478 6.57351 7.10021 7.22422 7.53108 8.08032 8.68937 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001621 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.029549 B =17269.165798 C =18252.563649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.053 0.947 4 C -0.127 4.127 5 C -0.109 4.109 6 H 0.131 0.869 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.709 5.709 10 C 0.137 3.863 11 C -0.163 4.163 12 C -0.124 4.124 13 C 0.072 3.928 14 N -0.677 5.677 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.138 4.138 28 C 0.050 3.950 29 O -0.398 6.398 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.345 0.655 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.029 0.971 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -30.245 10.718 33.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.071 0.929 4 C -0.165 4.165 5 C -0.130 4.130 6 H 0.149 0.851 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.362 5.362 10 C 0.014 3.986 11 C -0.182 4.182 12 C -0.143 4.143 13 C -0.056 4.056 14 N -0.309 5.309 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.176 4.176 28 C -0.026 4.026 29 O -0.318 6.318 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.047 0.953 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.385 -29.578 10.721 32.559 hybrid contribution -0.364 1.287 -0.164 1.347 sum -8.748 -28.292 10.557 31.439 Atomic orbital electron populations 1.21746 0.92491 1.03122 1.02499 1.22345 0.95775 0.95569 0.84993 0.92936 1.21996 0.93650 1.02370 0.98489 1.21515 0.96971 0.92090 1.02410 0.85122 1.21229 0.82230 0.92178 0.74767 1.90684 1.58621 1.45666 1.51000 1.45877 1.06704 1.09116 1.74504 1.20420 0.92125 0.84178 1.01880 1.22838 0.93270 1.03081 0.99058 1.22839 1.00928 0.95930 0.94646 1.21310 0.95592 0.88277 1.00432 1.60053 1.56321 1.02767 1.11729 1.21552 0.95944 0.89978 0.99414 1.20834 0.86475 0.86960 0.83280 1.90484 1.32590 1.83982 1.43855 1.41940 1.31508 1.10482 1.37053 1.19688 1.14922 0.88961 1.22925 0.90220 1.26085 0.97053 1.03134 0.95120 1.69674 1.26315 1.35370 1.24754 0.84896 0.77943 0.76639 0.78664 1.19524 1.19522 1.19735 1.22242 1.02754 1.00838 0.91741 1.22771 0.80692 0.99091 1.00086 1.87881 1.21869 1.78052 1.43983 0.91041 0.92618 0.90548 0.91035 0.88674 0.74539 0.92312 0.91496 0.83670 0.85456 0.89582 0.93677 0.83697 0.87607 0.91920 0.76977 0.91253 0.88068 0.87826 0.95282 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.56 71.98 0.69 -1.54 16 2 C 0.07 1.32 2.98 30.63 0.09 1.41 16 3 H 0.05 1.32 5.81 -2.39 -0.01 1.31 16 4 C -0.13 -1.77 4.56 30.69 0.14 -1.63 16 5 C -0.11 -1.16 3.04 -11.42 -0.03 -1.19 16 6 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 7 C 0.51 8.84 5.82 87.66 0.51 9.35 16 8 O -0.58 -15.70 13.85 -3.05 -0.04 -15.75 16 9 N -0.71 -9.08 5.43 -466.78 -2.53 -11.62 16 10 C 0.14 2.34 5.76 85.63 0.49 2.83 16 11 C -0.16 -2.25 9.63 25.64 0.25 -2.00 16 12 C -0.12 -2.22 9.77 25.64 0.25 -1.97 16 13 C 0.07 1.64 5.77 85.55 0.49 2.13 16 14 N -0.68 -21.53 6.11 -521.98 -3.19 -24.72 16 15 C 0.06 2.24 6.17 85.56 0.53 2.77 16 16 C 0.44 21.28 7.82 87.66 0.69 21.96 16 17 O -0.62 -35.10 15.78 -3.05 -0.05 -35.15 16 18 N -0.57 -30.03 5.29 -306.99 -1.62 -31.65 16 19 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 23 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C -0.14 -0.97 5.58 30.75 0.17 -0.80 16 28 C 0.05 0.66 6.62 72.08 0.48 1.14 16 29 O -0.40 -7.55 10.41 -148.98 -1.55 -9.10 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 2.43 7.86 -92.71 -0.73 1.70 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.39 5.30 -2.39 -0.01 1.38 16 38 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.02 5.30 -2.39 -0.01 1.01 16 42 H 0.34 11.62 8.42 -89.70 -0.76 10.87 16 43 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 46 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.10 0.21 7.51 -2.38 -0.02 0.20 16 49 H 0.03 0.49 7.38 -2.39 -0.02 0.47 16 50 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.27 403.67 -1.90 -78.17 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -1.24 Total: 40.84 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.02 Total: 13.60 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -7.07 Total: -118.05 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -1.64 Total: -60.00 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.27 -1.90 -78.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.369 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds