Wall clock time and date at job start Tue Mar 31 2020 23:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.48086 * 2 1 4 4 C 1.53088 * 109.48180 * 239.97347 * 2 1 3 5 5 C 1.53174 * 109.16468 * 182.40551 * 4 2 1 6 6 H 1.08996 * 109.55008 * 297.02933 * 5 4 2 7 7 C 1.50698 * 109.54406 * 176.84580 * 5 4 2 8 8 O 1.21287 * 120.00408 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00152 * 180.02562 * 7 5 4 10 10 C 1.46502 * 120.00436 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.31006 * 119.99866 * 127.18853 * 11 10 9 13 13 C 1.50698 * 119.99776 * 7.32039 * 12 11 10 14 14 N 1.46898 * 109.46981 * 127.00485 * 13 12 11 15 15 C 1.46900 * 110.99916 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47105 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00294 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99956 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00286 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99648 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47235 * 89.99864 * 23 21 19 25 25 H 1.48498 * 109.47047 * 209.99906 * 23 21 19 26 26 H 1.48501 * 109.46922 * 329.99897 * 23 21 19 27 27 C 1.53186 * 109.03226 * 56.98434 * 5 4 2 28 28 C 1.53092 * 109.16113 * 303.01369 * 27 5 4 29 29 O 1.42903 * 109.47921 * 120.03044 * 2 1 3 30 30 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47207 * 300.02593 * 1 2 3 32 32 H 1.08997 * 109.47173 * 60.02381 * 1 2 3 33 33 H 1.09000 * 109.52068 * 62.50351 * 4 2 1 34 34 H 1.08995 * 109.52441 * 302.31682 * 4 2 1 35 35 H 0.97006 * 120.00313 * 0.02562 * 9 7 5 36 36 H 1.09006 * 109.46362 * 60.00286 * 10 9 7 37 37 H 1.08996 * 109.47048 * 300.00560 * 10 9 7 38 38 H 1.08007 * 120.00293 * 306.90949 * 11 10 9 39 39 H 1.07998 * 119.99487 * 187.31717 * 12 11 10 40 40 H 1.09000 * 109.46768 * 247.00037 * 13 12 11 41 41 H 1.08998 * 109.47094 * 6.99613 * 13 12 11 42 42 H 1.00894 * 111.00177 * 56.03790 * 14 13 12 43 43 H 1.09003 * 109.46569 * 299.99295 * 15 14 13 44 44 H 1.08998 * 109.47676 * 59.99454 * 15 14 13 45 45 H 0.96996 * 120.00331 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00348 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.52285 * 62.92567 * 27 5 4 48 48 H 1.09001 * 109.51763 * 183.11676 * 27 5 4 49 49 H 1.08993 * 109.48458 * 297.63028 * 28 27 5 50 50 H 1.09005 * 109.47636 * 177.59053 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2495 5 6 3.5710 -0.7707 -1.2122 6 1 3.9690 0.2435 -1.2423 7 6 4.0799 -1.5474 -2.3991 8 8 3.2970 -2.0165 -3.1979 9 7 5.4051 -1.7209 -2.5731 10 6 5.8998 -2.4765 -3.7266 11 6 7.4055 -2.5241 -3.6876 12 6 8.0267 -3.6749 -3.7659 13 6 7.2495 -4.9321 -4.0600 14 7 7.8567 -5.6271 -5.2028 15 6 7.1233 -6.8600 -5.5194 16 6 7.7736 -7.5436 -6.6945 17 8 8.7519 -7.0524 -7.2166 18 7 7.2685 -8.7013 -7.1646 19 6 7.8603 -9.3235 -8.2334 20 1 8.7315 -8.8861 -8.6983 21 6 7.3394 -10.5168 -8.7184 22 7 6.2797 -11.0493 -8.1524 23 14 8.1462 -11.3649 -10.1742 24 1 9.1858 -12.3058 -9.6851 25 1 7.1198 -12.1162 -10.9406 26 1 8.7744 -10.3470 -11.0542 27 6 4.0176 -1.4601 0.0809 28 6 3.4307 -0.7093 1.2791 29 8 2.0065 -0.6742 1.1664 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.7148 -0.1842 -2.1398 34 1 1.6443 -1.7373 -1.2710 35 1 6.0314 -1.3461 -1.9341 36 1 5.5750 -1.9895 -4.6462 37 1 5.5035 -3.4913 -3.6933 38 1 7.9728 -1.6092 -3.5996 39 1 9.0956 -3.7225 -3.6198 40 1 7.2687 -5.5838 -3.1864 41 1 6.2176 -4.6741 -4.2980 42 1 8.8322 -5.8199 -5.0320 43 1 7.1414 -7.5252 -4.6561 44 1 6.0907 -6.6150 -5.7678 45 1 6.4864 -9.0943 -6.7469 46 1 5.9158 -11.8821 -8.4912 47 1 3.6613 -2.4902 0.0863 48 1 5.1058 -1.4497 0.1421 49 1 3.8192 0.3089 1.2959 50 1 3.7099 -1.2204 2.2005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669107249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:58 Heat of formation + Delta-G solvation = -108.718774 kcal Electronic energy + Delta-G solvation = -28249.249639 eV Core-core repulsion = 24083.458548 eV Total energy + Delta-G solvation = -4165.791091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74180 -39.13979 -38.34158 -37.05294 -35.10077 -34.22700 -33.87316 -33.28029 -32.66472 -31.19916 -28.51562 -28.04785 -26.58515 -24.95667 -24.44401 -23.16211 -23.13623 -21.26980 -20.40458 -19.52143 -18.86369 -17.87148 -17.34269 -16.87510 -16.65471 -16.39414 -15.99639 -15.64673 -15.47183 -15.15902 -15.01365 -14.60272 -14.56024 -14.34255 -13.84211 -13.77131 -13.64907 -13.50718 -13.06178 -12.92259 -12.78150 -12.67488 -12.43470 -12.35653 -11.86137 -11.83121 -11.61135 -11.54231 -11.48675 -11.26182 -11.03277 -10.93234 -10.85000 -10.38340 -10.32788 -10.20893 -9.90621 -9.57227 -9.50045 -9.16450 -8.45993 -8.04975 -7.94964 -6.40531 -3.81506 1.77993 2.32856 2.98986 3.18814 3.27452 3.30869 3.33688 3.91649 4.09153 4.13659 4.18900 4.25603 4.41554 4.42019 4.55520 4.65474 4.70436 4.80417 4.88205 4.95303 4.97011 5.09906 5.13196 5.16836 5.21349 5.26363 5.30977 5.32605 5.43973 5.49455 5.53629 5.60254 5.60880 5.70757 5.74927 5.80513 5.86283 5.98152 6.08896 6.26403 6.33329 6.56373 6.77409 7.16225 7.17822 7.56279 7.62766 7.92032 8.07234 8.62210 9.18789 9.55241 10.06582 10.77193 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.001518 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.045775 B =18439.969386 C =19294.022046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.131 4.131 5 C -0.109 4.109 6 H 0.097 0.903 7 C 0.515 3.485 8 O -0.534 6.534 9 N -0.725 5.725 10 C 0.139 3.861 11 C -0.184 4.184 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.148 4.148 28 C 0.064 3.936 29 O -0.379 6.379 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 23.586 21.902 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.169 4.169 5 C -0.130 4.130 6 H 0.115 0.885 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.377 5.377 10 C 0.017 3.983 11 C -0.203 4.203 12 C -0.129 4.129 13 C -0.059 4.059 14 N -0.295 5.295 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.186 4.186 28 C -0.013 4.013 29 O -0.298 6.298 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.169 0.831 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.070 0.930 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.111 23.663 20.548 32.136 hybrid contribution 0.841 -1.027 0.270 1.355 sum -6.269 22.636 20.818 31.387 Atomic orbital electron populations 1.21761 0.92716 1.03287 1.02507 1.22142 0.95456 0.94790 0.84753 0.92388 1.22076 0.92804 1.03395 0.98588 1.21393 0.97994 1.00185 0.93457 0.88454 1.20553 0.82165 0.80410 0.86759 1.90744 1.55578 1.49196 1.45445 1.46022 1.07019 1.56504 1.28135 1.20525 0.91662 0.97305 0.88837 1.22657 0.94692 0.98052 1.04940 1.22853 1.00124 0.93949 0.95982 1.21290 0.98976 0.93368 0.92313 1.60086 1.06968 1.24242 1.38242 1.21696 0.98877 0.90535 0.97181 1.19774 0.87218 0.83183 0.87196 1.90520 1.28548 1.66023 1.61688 1.41860 1.28531 1.19884 1.29703 1.19713 1.12029 1.03834 1.07399 0.87901 1.25268 0.96326 0.97031 0.99317 1.69611 1.22338 1.20462 1.41860 0.85847 0.78498 0.79170 0.80703 1.20435 1.20914 1.19396 1.22223 1.01435 1.01238 0.93726 1.22543 0.81231 0.99484 0.98001 1.87963 1.20748 1.78023 1.43116 0.91565 0.91780 0.90882 0.90062 0.89919 0.76664 0.90665 0.89951 0.86449 0.86538 0.94484 0.89661 0.83108 0.93786 0.89490 0.77431 0.91859 0.90170 0.90249 0.92967 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.50 16 2 C 0.09 0.57 3.26 -26.69 -0.09 0.48 16 3 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.13 -1.00 4.02 -26.60 -0.11 -1.11 16 5 C -0.11 -0.72 2.61 -91.59 -0.24 -0.96 16 6 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 7 C 0.52 5.02 7.16 -10.99 -0.08 4.94 16 8 O -0.53 -7.64 15.97 5.55 0.09 -7.55 16 9 N -0.72 -5.66 5.46 -61.47 -0.34 -5.99 16 10 C 0.14 1.36 5.76 -5.19 -0.03 1.33 16 11 C -0.18 -1.59 9.63 -36.03 -0.35 -1.94 16 12 C -0.11 -1.10 9.77 -36.03 -0.35 -1.46 16 13 C 0.07 0.85 5.78 -4.98 -0.03 0.82 16 14 N -0.66 -10.83 6.11 -116.34 -0.71 -11.54 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.61 7.82 -10.99 -0.09 10.52 16 17 O -0.58 -16.09 15.78 5.55 0.09 -16.00 16 18 N -0.56 -14.53 5.29 -10.97 -0.06 -14.59 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 23 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.15 -0.79 5.30 -26.59 -0.14 -0.93 16 28 C 0.06 0.33 6.84 37.21 0.25 0.59 16 29 O -0.38 -3.00 10.41 -35.23 -0.37 -3.36 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 35 H 0.40 1.92 7.98 -40.82 -0.33 1.59 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.93 5.29 -51.93 -0.27 0.66 16 38 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 1.07 5.28 -51.93 -0.27 0.79 16 42 H 0.35 5.76 8.42 -39.29 -0.33 5.43 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.26 7.70 -51.93 -0.40 -0.13 16 49 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -34.84 409.81 -8.77 -43.61 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.20 Total: 12.59 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.16 Total: 4.52 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.38 Total: -56.22 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.19 Total: -26.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.84 -8.77 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.108 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds