Wall clock time and date at job start Tue Mar 31 2020 23:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.48086 * 2 1 4 4 C 1.53088 * 109.48180 * 239.97347 * 2 1 3 5 5 C 1.53174 * 109.16468 * 182.40551 * 4 2 1 6 6 H 1.08996 * 109.55008 * 297.02933 * 5 4 2 7 7 C 1.50698 * 109.54406 * 176.84580 * 5 4 2 8 8 O 1.21287 * 120.00408 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00152 * 180.02562 * 7 5 4 10 10 C 1.46502 * 120.00436 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.31006 * 119.99866 * 127.18853 * 11 10 9 13 13 C 1.50698 * 119.99776 * 7.32039 * 12 11 10 14 14 N 1.46898 * 109.46981 * 127.00485 * 13 12 11 15 15 C 1.46900 * 110.99916 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47105 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00294 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99956 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00286 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99648 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00334 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47235 * 89.99864 * 23 21 19 25 25 H 1.48498 * 109.47047 * 209.99906 * 23 21 19 26 26 H 1.48501 * 109.46922 * 329.99897 * 23 21 19 27 27 C 1.53186 * 109.03226 * 56.98434 * 5 4 2 28 28 C 1.53092 * 109.16113 * 303.01369 * 27 5 4 29 29 O 1.42903 * 109.47921 * 120.03044 * 2 1 3 30 30 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47207 * 300.02593 * 1 2 3 32 32 H 1.08997 * 109.47173 * 60.02381 * 1 2 3 33 33 H 1.09000 * 109.52068 * 62.50351 * 4 2 1 34 34 H 1.08995 * 109.52441 * 302.31682 * 4 2 1 35 35 H 0.97006 * 120.00313 * 0.02562 * 9 7 5 36 36 H 1.09006 * 109.46362 * 60.00286 * 10 9 7 37 37 H 1.08996 * 109.47048 * 300.00560 * 10 9 7 38 38 H 1.08007 * 120.00293 * 306.90949 * 11 10 9 39 39 H 1.07998 * 119.99487 * 187.31717 * 12 11 10 40 40 H 1.09000 * 109.46768 * 247.00037 * 13 12 11 41 41 H 1.08998 * 109.47094 * 6.99613 * 13 12 11 42 42 H 1.00894 * 111.00177 * 56.03790 * 14 13 12 43 43 H 1.09003 * 109.46569 * 299.99295 * 15 14 13 44 44 H 1.08998 * 109.47676 * 59.99454 * 15 14 13 45 45 H 0.96996 * 120.00331 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00348 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.52285 * 62.92567 * 27 5 4 48 48 H 1.09001 * 109.51763 * 183.11676 * 27 5 4 49 49 H 1.08993 * 109.48458 * 297.63028 * 28 27 5 50 50 H 1.09005 * 109.47636 * 177.59053 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2495 5 6 3.5710 -0.7707 -1.2122 6 1 3.9690 0.2435 -1.2423 7 6 4.0799 -1.5474 -2.3991 8 8 3.2970 -2.0165 -3.1979 9 7 5.4051 -1.7209 -2.5731 10 6 5.8998 -2.4765 -3.7266 11 6 7.4055 -2.5241 -3.6876 12 6 8.0267 -3.6749 -3.7659 13 6 7.2495 -4.9321 -4.0600 14 7 7.8567 -5.6271 -5.2028 15 6 7.1233 -6.8600 -5.5194 16 6 7.7736 -7.5436 -6.6945 17 8 8.7519 -7.0524 -7.2166 18 7 7.2685 -8.7013 -7.1646 19 6 7.8603 -9.3235 -8.2334 20 1 8.7315 -8.8861 -8.6983 21 6 7.3394 -10.5168 -8.7184 22 7 6.2797 -11.0493 -8.1524 23 14 8.1462 -11.3649 -10.1742 24 1 9.1858 -12.3058 -9.6851 25 1 7.1198 -12.1162 -10.9406 26 1 8.7744 -10.3470 -11.0542 27 6 4.0176 -1.4601 0.0809 28 6 3.4307 -0.7093 1.2791 29 8 2.0065 -0.6742 1.1664 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.7148 -0.1842 -2.1398 34 1 1.6443 -1.7373 -1.2710 35 1 6.0314 -1.3461 -1.9341 36 1 5.5750 -1.9895 -4.6462 37 1 5.5035 -3.4913 -3.6933 38 1 7.9728 -1.6092 -3.5996 39 1 9.0956 -3.7225 -3.6198 40 1 7.2687 -5.5838 -3.1864 41 1 6.2176 -4.6741 -4.2980 42 1 8.8322 -5.8199 -5.0320 43 1 7.1414 -7.5252 -4.6561 44 1 6.0907 -6.6150 -5.7678 45 1 6.4864 -9.0943 -6.7469 46 1 5.9158 -11.8821 -8.4912 47 1 3.6613 -2.4902 0.0863 48 1 5.1058 -1.4497 0.1421 49 1 3.8192 0.3089 1.2959 50 1 3.7099 -1.2204 2.2005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669107249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:58 Heat of formation + Delta-G solvation = -136.143470 kcal Electronic energy + Delta-G solvation = -28250.438863 eV Core-core repulsion = 24083.458548 eV Total energy + Delta-G solvation = -4166.980315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40607 -40.20714 -39.75287 -38.08531 -36.30038 -35.78057 -34.83863 -33.91270 -33.49120 -33.23194 -29.45003 -28.86413 -27.65214 -26.46990 -25.18246 -24.49928 -23.63079 -21.87568 -21.23053 -21.03826 -20.06290 -19.69127 -18.17943 -17.80899 -17.35807 -17.22126 -17.05572 -16.86432 -16.46803 -16.28296 -16.04013 -15.89179 -15.55718 -15.32841 -15.16364 -15.03045 -14.54635 -14.35724 -14.30925 -13.91858 -13.55342 -13.53552 -13.40806 -13.22809 -13.16311 -12.97538 -12.81640 -12.75416 -12.43590 -12.39336 -12.12982 -12.09791 -11.77219 -11.66884 -11.52514 -11.45181 -11.01629 -10.52900 -10.38879 -10.29894 -10.04402 -9.98572 -9.29980 -8.48359 -5.97751 1.01802 1.37261 1.41078 1.54363 1.57598 2.01957 2.27128 2.30870 2.87742 2.99112 3.18562 3.55076 3.58181 3.64533 3.73136 3.77022 3.94299 4.04099 4.21011 4.21315 4.22117 4.28654 4.41311 4.44205 4.46775 4.47329 4.51736 4.53290 4.67177 4.71625 4.76057 4.77587 4.83115 4.95568 4.99919 5.05183 5.09984 5.25286 5.31013 5.36830 5.39068 5.55729 5.78158 5.86245 6.05549 6.33504 6.37189 6.53279 6.57339 7.10019 7.22610 7.53118 8.07986 8.69048 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.001518 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.045775 B =18439.969386 C =19294.022046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.078 0.922 4 C -0.130 4.130 5 C -0.102 4.102 6 H 0.128 0.872 7 C 0.511 3.489 8 O -0.588 6.588 9 N -0.708 5.708 10 C 0.138 3.862 11 C -0.161 4.161 12 C -0.126 4.126 13 C 0.071 3.929 14 N -0.678 5.678 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.996 3.004 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.143 4.143 28 C 0.060 3.940 29 O -0.403 6.403 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.418 0.582 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.347 0.653 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.056 0.944 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 25.060 23.366 34.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.123 4.123 6 H 0.146 0.854 7 C 0.299 3.701 8 O -0.468 6.468 9 N -0.361 5.361 10 C 0.015 3.985 11 C -0.180 4.180 12 C -0.145 4.145 13 C -0.057 4.057 14 N -0.311 5.311 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.181 4.181 28 C -0.017 4.017 29 O -0.323 6.323 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.166 0.834 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.231 25.154 22.070 34.038 hybrid contribution 0.545 -1.430 -0.147 1.537 sum -5.686 23.724 21.922 32.798 Atomic orbital electron populations 1.21794 0.92699 1.02614 1.03322 1.22184 0.95639 0.95348 0.83748 0.90384 1.22031 0.93852 1.01733 0.99166 1.21420 0.97073 1.01303 0.92494 0.85376 1.21168 0.82206 0.79820 0.86934 1.90724 1.56977 1.51516 1.47537 1.45857 1.06874 1.55580 1.27758 1.20404 0.92657 0.96461 0.89008 1.22762 0.93714 0.98663 1.02909 1.22830 1.00698 0.93230 0.97723 1.21315 0.98819 0.94284 0.91257 1.60076 1.06912 1.23357 1.40735 1.21540 0.98744 0.91393 0.95211 1.20816 0.86458 0.82350 0.87887 1.90483 1.30321 1.66823 1.63249 1.41938 1.28786 1.20624 1.29622 1.19701 1.12518 1.05216 1.09165 0.90193 1.26082 0.96659 0.96980 1.01592 1.69675 1.22875 1.20812 1.42778 0.84892 0.77927 0.77960 0.77328 1.19432 1.19563 1.19766 1.22218 1.03046 0.99769 0.93055 1.22747 0.79926 1.00851 0.98142 1.87940 1.22510 1.78423 1.43418 0.93007 0.91175 0.89839 0.90634 0.92930 0.74470 0.92218 0.91688 0.83645 0.85204 0.93283 0.90159 0.83363 0.91362 0.88325 0.77001 0.91255 0.92481 0.87522 0.90737 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 71.98 0.69 -1.00 16 2 C 0.09 1.07 3.26 30.62 0.10 1.17 16 3 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 4 C -0.13 -1.98 4.02 30.68 0.12 -1.86 16 5 C -0.10 -1.18 2.61 -11.42 -0.03 -1.21 16 6 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 7 C 0.51 9.65 7.16 87.66 0.63 10.27 16 8 O -0.59 -17.45 15.97 -3.05 -0.05 -17.49 16 9 N -0.71 -9.81 5.46 -466.79 -2.55 -12.36 16 10 C 0.14 2.56 5.76 85.63 0.49 3.06 16 11 C -0.16 -2.39 9.63 25.64 0.25 -2.15 16 12 C -0.13 -2.27 9.77 25.64 0.25 -2.02 16 13 C 0.07 1.66 5.78 85.56 0.49 2.15 16 14 N -0.68 -21.72 6.11 -522.00 -3.19 -24.92 16 15 C 0.06 2.26 6.17 85.56 0.53 2.79 16 16 C 0.44 21.38 7.82 87.66 0.69 22.07 16 17 O -0.62 -35.13 15.78 -3.06 -0.05 -35.18 16 18 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 19 C -0.34 -19.49 9.68 84.04 0.81 -18.67 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 23 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C -0.14 -1.24 5.30 30.69 0.16 -1.08 16 28 C 0.06 0.47 6.84 72.01 0.49 0.96 16 29 O -0.40 -5.88 10.41 -148.98 -1.55 -7.43 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 35 H 0.42 2.65 7.98 -92.70 -0.74 1.91 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.47 5.29 -2.39 -0.01 1.45 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.97 5.28 -2.39 -0.01 1.95 16 42 H 0.35 11.29 8.42 -89.70 -0.76 10.53 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.40 19.86 7.90 -92.71 -0.73 19.12 16 46 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.11 0.33 7.70 -2.39 -0.02 0.31 16 49 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -78.11 409.81 -1.82 -79.93 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -1.26 Total: 39.73 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.14 Total: 14.23 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -7.08 Total: -119.30 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -1.65 Total: -60.11 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.11 -1.82 -79.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.215 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds