Wall clock time and date at job start Tue Mar 31 2020 23:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47718 * 2 1 4 4 C 1.53092 * 109.48253 * 239.97724 * 2 1 3 5 5 C 1.53174 * 109.16268 * 182.40637 * 4 2 1 6 6 H 1.09006 * 109.54359 * 297.02349 * 5 4 2 7 7 C 1.50705 * 109.54428 * 176.84869 * 5 4 2 8 8 O 1.21285 * 119.99771 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00124 * 180.02562 * 7 5 4 10 10 C 1.46498 * 119.99723 * 179.97438 * 9 7 5 11 11 C 1.50710 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.30993 * 120.00228 * 124.99572 * 11 10 9 13 13 C 1.50697 * 120.00196 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46943 * 125.00091 * 13 12 11 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 O 1.21297 * 120.00124 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.07990 * 119.99768 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99812 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99864 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99403 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47078 * 60.00286 * 23 21 19 25 25 H 1.48505 * 109.46585 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47705 * 299.99905 * 23 21 19 27 27 C 1.53177 * 109.03916 * 56.98177 * 5 4 2 28 28 C 1.53096 * 109.16163 * 303.01842 * 27 5 4 29 29 O 1.42900 * 109.41483 * 57.60714 * 28 27 5 30 30 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47042 * 300.02147 * 1 2 3 32 32 H 1.08997 * 109.46727 * 60.02542 * 1 2 3 33 33 H 1.08996 * 109.52092 * 62.49952 * 4 2 1 34 34 H 1.08998 * 109.52300 * 302.31007 * 4 2 1 35 35 H 0.96995 * 120.00125 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47643 * 59.99893 * 10 9 7 37 37 H 1.08997 * 109.47122 * 299.99160 * 10 9 7 38 38 H 1.08005 * 119.99476 * 304.99505 * 11 10 9 39 39 H 1.08001 * 119.99872 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.46763 * 5.00533 * 13 12 11 41 41 H 1.08995 * 109.47483 * 245.00190 * 13 12 11 42 42 H 1.00901 * 111.00067 * 303.95401 * 14 13 12 43 43 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 44 44 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 45 45 H 0.97009 * 119.99629 * 359.97438 * 18 16 15 46 46 H 0.97004 * 119.99642 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.52178 * 62.91957 * 27 5 4 48 48 H 1.08995 * 109.52282 * 183.11311 * 27 5 4 49 49 H 1.09005 * 109.48013 * 297.62868 * 28 27 5 50 50 H 1.09001 * 109.48100 * 177.59294 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7707 -1.2122 6 1 3.9690 0.2438 -1.2424 7 6 4.0801 -1.5472 -2.3992 8 8 3.2971 -2.0169 -3.1975 9 7 5.4053 -1.7207 -2.5731 10 6 5.8999 -2.4761 -3.7268 11 6 7.4058 -2.5227 -3.6884 12 6 8.0265 -3.6757 -3.7235 13 6 9.5323 -3.7224 -3.6858 14 7 9.9679 -4.5814 -2.5766 15 6 11.4338 -4.6502 -2.5084 16 6 11.8421 -5.5386 -1.3616 17 8 10.9953 -6.0632 -0.6695 18 7 13.1482 -5.7502 -1.1050 19 6 13.5197 -6.5588 -0.0621 20 1 12.7658 -7.0259 0.5541 21 6 14.8663 -6.7765 0.2027 22 7 15.7836 -6.2077 -0.5468 23 14 15.3723 -7.8777 1.6242 24 1 14.8230 -9.2413 1.4139 25 1 16.8542 -7.9458 1.6942 26 1 14.8423 -7.3211 2.8947 27 6 4.0177 -1.4600 0.0808 28 6 3.4308 -0.7093 1.2790 29 8 2.0067 -0.6743 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.7149 -0.1841 -2.1398 34 1 1.6445 -1.7373 -1.2711 35 1 6.0315 -1.3454 -1.9345 36 1 5.5752 -1.9892 -4.6463 37 1 5.5037 -3.4910 -3.6935 38 1 7.9732 -1.6054 -3.6321 39 1 7.4591 -4.5929 -3.7803 40 1 9.9234 -2.7153 -3.5407 41 1 9.9070 -4.1257 -4.6265 42 1 9.5799 -4.2652 -1.7004 43 1 11.8220 -5.0597 -3.4409 44 1 11.8377 -3.6495 -2.3549 45 1 13.8254 -5.3309 -1.6588 46 1 16.7236 -6.3594 -0.3617 47 1 3.6614 -2.4900 0.0862 48 1 5.1059 -1.4496 0.1419 49 1 3.8193 0.3090 1.2958 50 1 3.7101 -1.2204 2.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669107251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:02 Heat of formation + Delta-G solvation = -117.625987 kcal Electronic energy + Delta-G solvation = -27998.167929 eV Core-core repulsion = 23831.990592 eV Total energy + Delta-G solvation = -4166.177337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73027 -39.10076 -38.36260 -36.83184 -35.30683 -34.21264 -33.91956 -33.26371 -32.67168 -31.23790 -28.77221 -28.25715 -26.43310 -25.07253 -24.05136 -23.14386 -22.57493 -21.26422 -20.56911 -19.77805 -19.19514 -17.92066 -17.58227 -16.82269 -16.57419 -16.38469 -15.95339 -15.71253 -15.48506 -15.06085 -14.82267 -14.63810 -14.48282 -14.27323 -13.97140 -13.77326 -13.62166 -13.45428 -13.10117 -13.02496 -12.78797 -12.68800 -12.32947 -12.22638 -11.92531 -11.81048 -11.62804 -11.57925 -11.50101 -11.28785 -11.17542 -11.03263 -10.89696 -10.45993 -10.33330 -10.23737 -9.90150 -9.58242 -9.52463 -9.24526 -8.51752 -8.12723 -7.98849 -6.44095 -3.85074 1.75050 2.29916 2.98126 3.18548 3.24434 3.28892 3.35039 3.87727 4.08320 4.12076 4.20328 4.28063 4.29812 4.45364 4.61631 4.69198 4.72278 4.79521 4.91866 4.98059 5.00252 5.04456 5.17729 5.20271 5.22952 5.24941 5.32250 5.34184 5.39368 5.48637 5.53850 5.56884 5.63334 5.63762 5.75254 5.75895 5.86009 5.92695 6.03997 6.21881 6.37732 6.47085 6.81794 7.12394 7.15535 7.52777 7.58986 7.88196 8.03480 8.58517 9.15251 9.51349 10.02770 10.73488 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001546 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.407718 B =18109.187064 C =19670.973696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.129 4.129 5 C -0.109 4.109 6 H 0.098 0.902 7 C 0.518 3.482 8 O -0.539 6.539 9 N -0.725 5.725 10 C 0.153 3.847 11 C -0.193 4.193 12 C -0.107 4.107 13 C 0.082 3.918 14 N -0.665 5.665 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.149 4.149 28 C 0.064 3.936 29 O -0.379 6.379 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.032 0.968 41 H 0.083 0.917 42 H 0.350 0.650 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.053 0.947 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.495 17.331 -3.851 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.167 4.167 5 C -0.131 4.131 6 H 0.116 0.884 7 C 0.304 3.696 8 O -0.415 6.415 9 N -0.377 5.377 10 C 0.030 3.970 11 C -0.212 4.212 12 C -0.127 4.127 13 C -0.047 4.047 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.187 4.187 28 C -0.013 4.013 29 O -0.298 6.298 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.170 0.830 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.585 15.944 -4.191 28.776 hybrid contribution 1.760 0.881 0.627 2.065 sum -21.826 16.826 -3.564 27.788 Atomic orbital electron populations 1.21757 0.92779 1.03222 1.02470 1.22138 0.95406 0.94834 0.84830 0.92392 1.22066 0.92827 1.03296 0.98553 1.21401 0.97944 1.00221 0.93517 0.88424 1.20566 0.82111 0.80237 0.86677 1.90712 1.55646 1.49517 1.45668 1.46038 1.07108 1.56369 1.28179 1.20312 0.91099 0.96881 0.88738 1.22809 0.94700 0.98503 1.05206 1.23011 0.96127 0.97944 0.95573 1.21081 0.91967 0.95196 0.96433 1.60041 1.08219 1.53929 1.07603 1.21689 0.88352 0.98488 0.99691 1.19787 0.83522 0.86617 0.87574 1.90527 1.50416 1.53841 1.51979 1.41854 1.05171 1.43514 1.29381 1.19666 0.92086 1.23818 1.07512 0.87950 1.25263 0.95411 0.98252 0.98935 1.69604 1.01281 1.44019 1.39378 0.85909 0.77156 0.80237 0.80865 1.19854 1.20960 1.19924 1.22228 1.01680 1.01212 0.93583 1.22559 0.81034 0.99555 0.98133 1.87964 1.20885 1.77974 1.43005 0.91609 0.91751 0.90966 0.90190 0.89992 0.76358 0.90860 0.90926 0.86781 0.86228 0.94963 0.89908 0.83031 0.89488 0.93829 0.77448 0.91801 0.90132 0.90052 0.92914 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.57 37.16 0.36 -0.51 16 2 C 0.09 0.59 3.26 -26.68 -0.09 0.50 16 3 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.13 -1.00 4.02 -26.59 -0.11 -1.10 16 5 C -0.11 -0.77 2.61 -91.59 -0.24 -1.01 16 6 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 7 C 0.52 5.01 7.16 -10.98 -0.08 4.93 16 8 O -0.54 -7.33 15.97 5.55 0.09 -7.24 16 9 N -0.73 -5.76 5.46 -61.47 -0.34 -6.10 16 10 C 0.15 1.34 6.11 -5.19 -0.03 1.30 16 11 C -0.19 -1.58 9.24 -36.02 -0.33 -1.92 16 12 C -0.11 -1.06 9.38 -36.03 -0.34 -1.40 16 13 C 0.08 0.93 6.12 -4.98 -0.03 0.90 16 14 N -0.67 -10.36 6.11 -116.34 -0.71 -11.07 16 15 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 16 C 0.44 10.26 7.82 -10.99 -0.09 10.18 16 17 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 18 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.15 -0.96 5.30 -26.59 -0.14 -1.10 16 28 C 0.06 0.40 6.84 37.21 0.25 0.66 16 29 O -0.38 -3.25 10.41 -35.23 -0.37 -3.62 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 35 H 0.40 2.31 7.98 -40.82 -0.33 1.98 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 38 H 0.11 0.82 7.84 -52.48 -0.41 0.41 16 39 H 0.12 1.26 7.84 -52.49 -0.41 0.85 16 40 H 0.03 0.33 7.79 -51.93 -0.40 -0.07 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.35 5.63 8.42 -39.29 -0.33 5.30 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 49 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 414.31 15.07 6.24 6.24 Total: -1.00 -33.79 414.31 -8.92 -42.71 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.43 Total: 12.34 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.13 Total: 4.29 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.38 Total: -54.91 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.19 Total: -26.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.79 -8.92 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.915 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds