Wall clock time and date at job start Tue Mar 31 2020 23:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47718 * 2 1 4 4 C 1.53092 * 109.48253 * 239.97724 * 2 1 3 5 5 C 1.53174 * 109.16268 * 182.40637 * 4 2 1 6 6 H 1.09006 * 109.54359 * 297.02349 * 5 4 2 7 7 C 1.50705 * 109.54428 * 176.84869 * 5 4 2 8 8 O 1.21285 * 119.99771 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00124 * 180.02562 * 7 5 4 10 10 C 1.46498 * 119.99723 * 179.97438 * 9 7 5 11 11 C 1.50710 * 109.47015 * 179.97438 * 10 9 7 12 12 C 1.30993 * 120.00228 * 124.99572 * 11 10 9 13 13 C 1.50697 * 120.00196 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46943 * 125.00091 * 13 12 11 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 O 1.21297 * 120.00124 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00290 * 180.02562 * 18 16 15 20 20 H 1.07990 * 119.99768 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99812 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99864 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99403 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47078 * 60.00286 * 23 21 19 25 25 H 1.48505 * 109.46585 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47705 * 299.99905 * 23 21 19 27 27 C 1.53177 * 109.03916 * 56.98177 * 5 4 2 28 28 C 1.53096 * 109.16163 * 303.01842 * 27 5 4 29 29 O 1.42900 * 109.41483 * 57.60714 * 28 27 5 30 30 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47042 * 300.02147 * 1 2 3 32 32 H 1.08997 * 109.46727 * 60.02542 * 1 2 3 33 33 H 1.08996 * 109.52092 * 62.49952 * 4 2 1 34 34 H 1.08998 * 109.52300 * 302.31007 * 4 2 1 35 35 H 0.96995 * 120.00125 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47643 * 59.99893 * 10 9 7 37 37 H 1.08997 * 109.47122 * 299.99160 * 10 9 7 38 38 H 1.08005 * 119.99476 * 304.99505 * 11 10 9 39 39 H 1.08001 * 119.99872 * 0.02562 * 12 11 10 40 40 H 1.09004 * 109.46763 * 5.00533 * 13 12 11 41 41 H 1.08995 * 109.47483 * 245.00190 * 13 12 11 42 42 H 1.00901 * 111.00067 * 303.95401 * 14 13 12 43 43 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 44 44 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 45 45 H 0.97009 * 119.99629 * 359.97438 * 18 16 15 46 46 H 0.97004 * 119.99642 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.52178 * 62.91957 * 27 5 4 48 48 H 1.08995 * 109.52282 * 183.11311 * 27 5 4 49 49 H 1.09005 * 109.48013 * 297.62868 * 28 27 5 50 50 H 1.09001 * 109.48100 * 177.59294 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5711 -0.7707 -1.2122 6 1 3.9690 0.2438 -1.2424 7 6 4.0801 -1.5472 -2.3992 8 8 3.2971 -2.0169 -3.1975 9 7 5.4053 -1.7207 -2.5731 10 6 5.8999 -2.4761 -3.7268 11 6 7.4058 -2.5227 -3.6884 12 6 8.0265 -3.6757 -3.7235 13 6 9.5323 -3.7224 -3.6858 14 7 9.9679 -4.5814 -2.5766 15 6 11.4338 -4.6502 -2.5084 16 6 11.8421 -5.5386 -1.3616 17 8 10.9953 -6.0632 -0.6695 18 7 13.1482 -5.7502 -1.1050 19 6 13.5197 -6.5588 -0.0621 20 1 12.7658 -7.0259 0.5541 21 6 14.8663 -6.7765 0.2027 22 7 15.7836 -6.2077 -0.5468 23 14 15.3723 -7.8777 1.6242 24 1 14.8230 -9.2413 1.4139 25 1 16.8542 -7.9458 1.6942 26 1 14.8423 -7.3211 2.8947 27 6 4.0177 -1.4600 0.0808 28 6 3.4308 -0.7093 1.2790 29 8 2.0067 -0.6743 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8897 32 1 -0.3633 0.5134 -0.8902 33 1 1.7149 -0.1841 -2.1398 34 1 1.6445 -1.7373 -1.2711 35 1 6.0315 -1.3454 -1.9345 36 1 5.5752 -1.9892 -4.6463 37 1 5.5037 -3.4910 -3.6935 38 1 7.9732 -1.6054 -3.6321 39 1 7.4591 -4.5929 -3.7803 40 1 9.9234 -2.7153 -3.5407 41 1 9.9070 -4.1257 -4.6265 42 1 9.5799 -4.2652 -1.7004 43 1 11.8220 -5.0597 -3.4409 44 1 11.8377 -3.6495 -2.3549 45 1 13.8254 -5.3309 -1.6588 46 1 16.7236 -6.3594 -0.3617 47 1 3.6614 -2.4900 0.0862 48 1 5.1059 -1.4496 0.1419 49 1 3.8193 0.3090 1.2958 50 1 3.7101 -1.2204 2.2004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669107251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:01 Heat of formation + Delta-G solvation = -143.679830 kcal Electronic energy + Delta-G solvation = -27999.297708 eV Core-core repulsion = 23831.990592 eV Total energy + Delta-G solvation = -4167.307116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41034 -40.16037 -39.74808 -37.81871 -36.37536 -35.82248 -34.85475 -33.90961 -33.50404 -33.20850 -29.78894 -28.86651 -27.71367 -26.24495 -25.22711 -23.81315 -23.44317 -21.90819 -21.31052 -21.07837 -20.36609 -19.88486 -18.29187 -17.91399 -17.38271 -17.19872 -17.02859 -16.71060 -16.47756 -16.26372 -15.98182 -15.65142 -15.56145 -15.21050 -15.18273 -14.97970 -14.69537 -14.33205 -14.17601 -13.92641 -13.57014 -13.51249 -13.38014 -13.18435 -13.07851 -12.90796 -12.83399 -12.69109 -12.43195 -12.40632 -12.14621 -12.12025 -12.05380 -11.74031 -11.50253 -11.47406 -11.03771 -10.54320 -10.37870 -10.28038 -10.01661 -9.99958 -9.33836 -8.46548 -5.95388 1.00197 1.40192 1.42496 1.53183 1.54732 2.05421 2.29233 2.30621 2.85959 2.99888 3.20869 3.53934 3.54121 3.63399 3.74194 3.77855 3.92611 4.08137 4.18848 4.20092 4.31726 4.35752 4.43316 4.44748 4.46861 4.51299 4.52838 4.59351 4.67335 4.70994 4.75362 4.79237 4.82166 4.84968 4.98803 5.03521 5.07540 5.23535 5.29929 5.34819 5.40900 5.62946 5.69565 5.89005 6.10122 6.31691 6.41433 6.48973 6.60288 7.12643 7.17711 7.56322 8.11772 8.70447 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001546 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.407718 B =18109.187064 C =19670.973696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.127 4.127 5 C -0.103 4.103 6 H 0.128 0.872 7 C 0.514 3.486 8 O -0.585 6.585 9 N -0.714 5.714 10 C 0.152 3.848 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.087 3.913 14 N -0.684 5.684 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.145 4.145 28 C 0.060 3.940 29 O -0.403 6.403 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.416 0.584 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.345 0.655 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.611 19.392 -3.806 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.165 4.165 5 C -0.124 4.124 6 H 0.146 0.854 7 C 0.302 3.698 8 O -0.465 6.465 9 N -0.366 5.366 10 C 0.029 3.971 11 C -0.182 4.182 12 C -0.145 4.145 13 C -0.040 4.040 14 N -0.317 5.317 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.183 4.183 28 C -0.016 4.016 29 O -0.323 6.323 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.164 0.836 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.092 0.908 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.667 18.035 -4.158 29.263 hybrid contribution 1.413 0.265 0.568 1.546 sum -21.254 18.300 -3.591 28.275 Atomic orbital electron populations 1.21790 0.92477 1.02659 1.03379 1.22231 0.95794 0.95364 0.83796 0.90461 1.22018 0.93511 1.01793 0.99193 1.21424 0.97347 1.01282 0.92366 0.85443 1.21070 0.82160 0.79755 0.86817 1.90694 1.56822 1.51502 1.47468 1.45946 1.06962 1.55616 1.28057 1.20252 0.91569 0.96148 0.89176 1.22823 0.94069 0.98705 1.02637 1.22832 0.95516 0.98147 0.97976 1.21104 0.92557 0.95472 0.94915 1.60024 1.07079 1.56011 1.08544 1.21543 0.89701 0.98223 0.97227 1.20923 0.82427 0.86088 0.88238 1.90494 1.51358 1.55472 1.53843 1.41922 1.06112 1.43684 1.29201 1.19641 0.92359 1.25681 1.08982 0.90363 1.26018 0.94880 0.99105 1.01078 1.69661 1.01638 1.44415 1.40246 0.84999 0.77358 0.78222 0.77820 1.19872 1.19444 1.19652 1.22207 1.02794 0.99828 0.93452 1.22711 0.80058 1.00777 0.98066 1.87940 1.22267 1.78452 1.43604 0.92934 0.91311 0.89567 0.90187 0.92815 0.74727 0.90785 0.92661 0.84576 0.87550 0.92855 0.89419 0.83617 0.87735 0.91129 0.76903 0.91271 0.92529 0.88119 0.90770 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.57 71.98 0.69 -0.98 16 2 C 0.09 1.09 3.26 30.63 0.10 1.19 16 3 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 4 C -0.13 -1.93 4.02 30.68 0.12 -1.81 16 5 C -0.10 -1.30 2.61 -11.42 -0.03 -1.33 16 6 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 7 C 0.51 9.64 7.16 87.66 0.63 10.26 16 8 O -0.58 -16.31 15.97 -3.05 -0.05 -16.36 16 9 N -0.71 -10.25 5.46 -466.78 -2.55 -12.80 16 10 C 0.15 2.50 6.11 85.64 0.52 3.02 16 11 C -0.16 -2.30 9.24 25.66 0.24 -2.06 16 12 C -0.13 -2.29 9.38 25.65 0.24 -2.05 16 13 C 0.09 1.77 6.12 85.56 0.52 2.29 16 14 N -0.68 -20.32 6.11 -521.98 -3.19 -23.51 16 15 C 0.07 2.12 6.17 85.55 0.53 2.65 16 16 C 0.44 20.36 7.82 87.66 0.69 21.05 16 17 O -0.63 -34.40 15.78 -3.08 -0.05 -34.45 16 18 N -0.57 -28.91 5.29 -306.99 -1.62 -30.54 16 19 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 20 H 0.08 4.71 7.16 -2.92 -0.02 4.69 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 22 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 23 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 C -0.14 -1.69 5.30 30.69 0.16 -1.52 16 28 C 0.06 0.66 6.84 72.01 0.49 1.15 16 29 O -0.40 -6.59 10.41 -148.98 -1.55 -8.14 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 35 H 0.42 3.65 7.98 -92.71 -0.74 2.91 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.12 7.79 -2.39 -0.02 1.11 16 38 H 0.14 1.40 7.84 -2.91 -0.02 1.37 16 39 H 0.11 2.23 7.84 -2.91 -0.02 2.21 16 40 H 0.05 0.88 7.79 -2.39 -0.02 0.86 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.35 10.77 8.42 -89.69 -0.76 10.01 16 43 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.40 18.92 7.90 -92.70 -0.73 18.19 16 46 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.10 0.76 7.70 -2.39 -0.02 0.74 16 49 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -75.02 414.31 -1.79 -76.81 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.27 Total: 39.54 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.18 Total: 13.56 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -7.08 Total: -115.46 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.65 Total: -58.95 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -75.02 -1.79 -76.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669107251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.871 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds