Wall clock time and date at job start Tue Mar 31 2020 23:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 5 5 C 1.53180 * 109.16075 * 177.59094 * 4 2 1 6 6 H 1.09005 * 109.54069 * 183.15152 * 5 4 2 7 7 C 1.50695 * 109.54802 * 62.88494 * 5 4 2 8 8 O 1.21285 * 119.99436 * 0.44451 * 7 5 4 9 9 N 1.34769 * 120.00236 * 180.44127 * 7 5 4 10 10 C 1.46501 * 120.00310 * 0.02562 * 9 7 5 11 11 C 1.46498 * 120.00003 * 180.02562 * 9 7 5 12 12 C 1.53943 * 113.73484 * 216.72672 * 11 9 7 13 13 N 1.47958 * 86.18090 * 221.92112 * 12 11 9 14 14 C 1.46902 * 110.99801 * 137.58305 * 13 12 11 15 15 C 1.50705 * 109.46875 * 90.63991 * 14 13 12 16 16 O 1.21288 * 120.00180 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99820 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99874 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00434 * 359.97438 * 18 17 15 20 20 C 1.38959 * 119.99881 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99647 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46814 * 90.00294 * 22 20 18 24 24 H 1.48494 * 109.46943 * 210.00249 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00142 * 22 20 18 26 26 C 1.47961 * 90.76505 * 24.68928 * 13 12 11 27 27 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 28 28 C 1.53092 * 109.16344 * 56.98567 * 27 5 4 29 29 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 30 30 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 32 32 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 33 33 H 1.08996 * 109.52270 * 57.68339 * 4 2 1 34 34 H 1.08995 * 109.57012 * 297.52187 * 4 2 1 35 35 H 1.08995 * 109.47227 * 89.99170 * 10 9 7 36 36 H 1.08997 * 109.47161 * 210.00108 * 10 9 7 37 37 H 1.09008 * 109.46480 * 329.99460 * 10 9 7 38 38 H 1.09003 * 112.94164 * 348.43579 * 11 9 7 39 39 H 1.08996 * 113.75740 * 336.24296 * 12 11 9 40 40 H 1.09003 * 113.75380 * 107.59961 * 12 11 9 41 41 H 1.08995 * 109.46975 * 210.63971 * 14 13 12 42 42 H 1.08996 * 109.46901 * 330.63935 * 14 13 12 43 43 H 0.97000 * 119.99752 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99364 * 179.97438 * 21 20 18 45 45 H 1.08994 * 113.76070 * 220.99344 * 26 13 12 46 46 H 1.08998 * 113.75825 * 89.62690 * 26 13 12 47 47 H 1.09004 * 109.52714 * 297.07587 * 27 5 4 48 48 H 1.08998 * 109.52443 * 176.88852 * 27 5 4 49 49 H 1.08997 * 109.48111 * 182.40965 * 28 27 5 50 50 H 1.08999 * 109.49220 * 62.37875 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7710 1.2122 6 1 3.9391 -1.3328 2.0707 7 6 4.1212 0.6314 1.2518 8 8 3.3652 1.5778 1.3129 9 7 5.4532 0.8339 1.2194 10 6 6.3664 -0.3092 1.1450 11 6 5.9880 2.1973 1.2585 12 6 7.2395 2.3972 0.3846 13 7 7.7777 3.1918 1.5108 14 6 9.1930 2.8774 1.7478 15 6 10.0569 3.8070 0.9350 16 8 9.5441 4.6483 0.2276 17 7 11.3994 3.7029 0.9935 18 6 12.1853 4.5489 0.2545 19 1 11.7288 5.2985 -0.3748 20 6 13.5695 4.4419 0.3152 21 7 14.1250 3.5294 1.0806 22 14 14.6404 5.5942 -0.6922 23 1 14.9477 6.8083 0.1056 24 1 15.9055 4.9054 -1.0528 25 1 13.9191 5.9847 -1.9301 26 6 6.9070 2.4680 2.4634 27 6 4.0176 -1.4602 -0.0808 28 6 3.4308 -0.7094 -1.2790 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 1.6442 -1.7375 1.2709 34 1 1.7149 -0.1853 2.1404 35 1 6.5615 -0.5511 0.1003 36 1 7.3039 -0.0582 1.6411 37 1 5.9131 -1.1690 1.6386 38 1 5.2219 2.9586 1.1113 39 1 7.7922 1.4777 0.1921 40 1 7.0565 2.9815 -0.5172 41 1 9.4205 3.0024 2.8064 42 1 9.3905 1.8469 1.4529 43 1 11.8094 3.0299 1.5590 44 1 15.0911 3.4545 1.1226 45 1 6.4585 3.1089 3.2224 46 1 7.3625 1.5692 2.8790 47 1 3.6613 -2.4903 -0.0864 48 1 5.1058 -1.4500 -0.1421 49 1 3.7100 -1.2204 -2.2004 50 1 3.8193 0.3088 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671179977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:32 Heat of formation + Delta-G solvation = -70.463778 kcal Electronic energy + Delta-G solvation = -30432.203421 eV Core-core repulsion = 26268.071191 eV Total energy + Delta-G solvation = -4164.132230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36267 -40.03012 -38.38359 -37.65826 -35.49833 -33.99561 -33.79283 -32.91831 -31.28645 -30.01148 -28.30025 -27.36458 -26.20474 -25.89458 -24.88242 -23.64521 -22.73083 -21.64043 -19.68778 -19.41805 -18.97341 -17.93283 -17.30226 -16.65825 -16.47838 -16.42894 -16.12398 -15.98282 -15.28903 -14.96871 -14.73558 -14.51802 -14.28095 -13.96377 -13.86377 -13.77533 -13.17324 -13.14802 -12.90319 -12.82825 -12.75017 -12.62025 -12.58966 -12.29298 -12.14630 -11.91346 -11.68901 -11.52881 -11.38777 -11.12048 -11.07803 -10.99308 -10.71981 -10.70502 -10.40343 -10.22529 -10.01535 -9.51280 -9.50575 -8.89129 -8.80921 -8.21939 -7.97271 -6.42885 -3.83495 2.29801 2.61581 3.17043 3.25614 3.31569 3.53120 3.86926 3.91221 4.07262 4.20104 4.23488 4.36118 4.44710 4.55724 4.59895 4.66475 4.80755 4.91636 4.92968 5.02629 5.09702 5.12924 5.16158 5.22953 5.26664 5.27738 5.31763 5.36223 5.41116 5.46111 5.56202 5.59070 5.61533 5.62798 5.69048 5.69412 5.82994 5.89809 5.96529 6.04168 6.18759 6.27982 6.49562 7.02084 7.02956 7.12140 7.54278 7.87801 8.04959 8.60979 9.17551 9.53260 10.05735 10.74973 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.002005 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.928122 B =13958.302359 C =14041.690061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.084 0.916 4 C -0.127 4.127 5 C -0.111 4.111 6 H 0.101 0.899 7 C 0.519 3.481 8 O -0.533 6.533 9 N -0.604 5.604 10 C 0.069 3.931 11 C 0.116 3.884 12 C 0.003 3.997 13 N -0.443 5.443 14 C 0.013 3.987 15 C 0.446 3.554 16 O -0.574 6.574 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.013 4.013 27 C -0.160 4.160 28 C 0.060 3.940 29 O -0.382 6.382 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.567 -15.975 2.517 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.133 4.133 6 H 0.119 0.881 7 C 0.307 3.693 8 O -0.409 6.409 9 N -0.337 5.337 10 C -0.074 4.074 11 C 0.012 3.988 12 C -0.127 4.127 13 N -0.166 5.166 14 C -0.119 4.119 15 C 0.230 3.770 16 O -0.457 6.457 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.143 4.143 27 C -0.198 4.198 28 C -0.016 4.016 29 O -0.301 6.301 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.114 0.886 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.225 -14.296 1.935 25.663 hybrid contribution 1.610 -0.817 0.320 1.834 sum -19.615 -15.113 2.255 24.864 Atomic orbital electron populations 1.21731 0.93265 1.02406 1.02494 1.22372 0.94967 0.96905 0.84089 0.89822 1.22007 0.92667 1.01844 0.99987 1.21422 0.97683 0.93808 1.00338 0.88081 1.20671 0.81814 0.91379 0.75447 1.90663 1.57016 1.44079 1.49186 1.47934 1.05825 1.07051 1.72904 1.22005 0.94684 0.88534 1.02130 1.23195 0.95721 0.83719 0.96170 1.24425 0.93608 0.97139 0.97511 1.68346 1.01858 1.43836 1.02549 1.22462 0.90147 0.97990 1.01281 1.19660 0.82879 0.87679 0.86739 1.90532 1.73202 1.38346 1.43590 1.41869 1.04128 1.32873 1.41559 1.19698 0.87600 1.13154 1.22255 0.87951 1.25256 0.97215 0.97758 0.97782 1.69613 1.11804 1.33908 1.39166 0.85858 0.78910 0.79631 0.79911 1.20395 1.20952 1.19430 1.24489 0.94798 0.97970 0.97020 1.22482 1.02636 1.00672 0.93968 1.22523 0.81541 0.99614 0.97970 1.87901 1.20483 1.78182 1.43560 0.92217 0.91079 0.91946 0.90555 0.90147 0.91698 0.90745 0.90509 0.85298 0.90950 0.88408 0.89309 0.92553 0.77591 0.91921 0.88748 0.91155 0.89804 0.89250 0.88577 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.56 37.16 0.36 -0.82 16 2 C 0.07 0.74 2.98 -26.68 -0.08 0.66 16 3 H 0.08 1.05 5.82 -51.93 -0.30 0.74 16 4 C -0.13 -1.05 4.56 -26.59 -0.12 -1.17 16 5 C -0.11 -0.85 2.23 -91.59 -0.20 -1.06 16 6 H 0.10 0.58 7.42 -51.93 -0.39 0.19 16 7 C 0.52 5.51 5.74 -10.99 -0.06 5.45 16 8 O -0.53 -7.48 13.34 5.55 0.07 -7.40 16 9 N -0.60 -5.87 3.09 -175.26 -0.54 -6.41 16 10 C 0.07 0.46 7.41 59.85 0.44 0.90 16 11 C 0.12 1.40 4.39 -69.61 -0.31 1.10 16 12 C 0.00 0.04 7.37 -2.76 -0.02 0.02 16 13 N -0.44 -7.20 5.65 -239.87 -1.36 -8.55 16 14 C 0.01 0.23 5.28 -4.97 -0.03 0.20 16 15 C 0.45 10.52 7.83 -10.98 -0.09 10.43 16 16 O -0.57 -15.83 16.01 5.55 0.09 -15.75 16 17 N -0.57 -14.29 5.29 -10.96 -0.06 -14.34 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 C -0.01 -0.15 7.47 -2.76 -0.02 -0.18 16 27 C -0.16 -1.05 5.29 -26.59 -0.14 -1.19 16 28 C 0.06 0.53 6.62 37.20 0.25 0.78 16 29 O -0.38 -4.13 10.41 -35.23 -0.37 -4.49 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.06 0.38 6.90 -51.93 -0.36 0.02 16 36 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 37 H 0.08 0.35 6.05 -51.92 -0.31 0.03 16 38 H 0.13 1.81 7.24 -51.93 -0.38 1.43 16 39 H 0.07 0.89 6.05 -51.93 -0.31 0.58 16 40 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.06 0.83 7.38 -51.93 -0.38 0.45 16 43 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.72 6.75 -51.93 -0.35 0.37 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.47 4.49 -51.93 -0.23 0.24 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.51 7.38 -51.93 -0.38 0.13 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -34.05 386.02 -8.68 -42.74 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.78 Total: 8.89 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.26 Total: 7.16 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -1.23 Total: -52.98 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.20 Total: -27.64 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.05 -8.68 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671179977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.728 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds