Wall clock time and date at job start Tue Mar 31 2020 23:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 5 5 C 1.53180 * 109.16075 * 177.59094 * 4 2 1 6 6 H 1.09005 * 109.54069 * 183.15152 * 5 4 2 7 7 C 1.50695 * 109.54802 * 62.88494 * 5 4 2 8 8 O 1.21285 * 119.99436 * 0.44451 * 7 5 4 9 9 N 1.34769 * 120.00236 * 180.44127 * 7 5 4 10 10 C 1.46501 * 120.00310 * 0.02562 * 9 7 5 11 11 C 1.46498 * 120.00003 * 180.02562 * 9 7 5 12 12 C 1.53943 * 113.73484 * 216.72672 * 11 9 7 13 13 N 1.47958 * 86.18090 * 221.92112 * 12 11 9 14 14 C 1.46902 * 110.99801 * 137.58305 * 13 12 11 15 15 C 1.50705 * 109.46875 * 90.63991 * 14 13 12 16 16 O 1.21288 * 120.00180 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99820 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99874 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00434 * 359.97438 * 18 17 15 20 20 C 1.38959 * 119.99881 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99647 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46814 * 90.00294 * 22 20 18 24 24 H 1.48494 * 109.46943 * 210.00249 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00142 * 22 20 18 26 26 C 1.47961 * 90.76505 * 24.68928 * 13 12 11 27 27 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 28 28 C 1.53092 * 109.16344 * 56.98567 * 27 5 4 29 29 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 30 30 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 32 32 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 33 33 H 1.08996 * 109.52270 * 57.68339 * 4 2 1 34 34 H 1.08995 * 109.57012 * 297.52187 * 4 2 1 35 35 H 1.08995 * 109.47227 * 89.99170 * 10 9 7 36 36 H 1.08997 * 109.47161 * 210.00108 * 10 9 7 37 37 H 1.09008 * 109.46480 * 329.99460 * 10 9 7 38 38 H 1.09003 * 112.94164 * 348.43579 * 11 9 7 39 39 H 1.08996 * 113.75740 * 336.24296 * 12 11 9 40 40 H 1.09003 * 113.75380 * 107.59961 * 12 11 9 41 41 H 1.08995 * 109.46975 * 210.63971 * 14 13 12 42 42 H 1.08996 * 109.46901 * 330.63935 * 14 13 12 43 43 H 0.97000 * 119.99752 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99364 * 179.97438 * 21 20 18 45 45 H 1.08994 * 113.76070 * 220.99344 * 26 13 12 46 46 H 1.08998 * 113.75825 * 89.62690 * 26 13 12 47 47 H 1.09004 * 109.52714 * 297.07587 * 27 5 4 48 48 H 1.08998 * 109.52443 * 176.88852 * 27 5 4 49 49 H 1.08997 * 109.48111 * 182.40965 * 28 27 5 50 50 H 1.08999 * 109.49220 * 62.37875 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0405 -0.7224 1.2496 5 6 3.5711 -0.7710 1.2122 6 1 3.9391 -1.3328 2.0707 7 6 4.1212 0.6314 1.2518 8 8 3.3652 1.5778 1.3129 9 7 5.4532 0.8339 1.2194 10 6 6.3664 -0.3092 1.1450 11 6 5.9880 2.1973 1.2585 12 6 7.2395 2.3972 0.3846 13 7 7.7777 3.1918 1.5108 14 6 9.1930 2.8774 1.7478 15 6 10.0569 3.8070 0.9350 16 8 9.5441 4.6483 0.2276 17 7 11.3994 3.7029 0.9935 18 6 12.1853 4.5489 0.2545 19 1 11.7288 5.2985 -0.3748 20 6 13.5695 4.4419 0.3152 21 7 14.1250 3.5294 1.0806 22 14 14.6404 5.5942 -0.6922 23 1 14.9477 6.8083 0.1056 24 1 15.9055 4.9054 -1.0528 25 1 13.9191 5.9847 -1.9301 26 6 6.9070 2.4680 2.4634 27 6 4.0176 -1.4602 -0.0808 28 6 3.4308 -0.7094 -1.2790 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 1.6442 -1.7375 1.2709 34 1 1.7149 -0.1853 2.1404 35 1 6.5615 -0.5511 0.1003 36 1 7.3039 -0.0582 1.6411 37 1 5.9131 -1.1690 1.6386 38 1 5.2219 2.9586 1.1113 39 1 7.7922 1.4777 0.1921 40 1 7.0565 2.9815 -0.5172 41 1 9.4205 3.0024 2.8064 42 1 9.3905 1.8469 1.4529 43 1 11.8094 3.0299 1.5590 44 1 15.0911 3.4545 1.1226 45 1 6.4585 3.1089 3.2224 46 1 7.3625 1.5692 2.8790 47 1 3.6613 -2.4903 -0.0864 48 1 5.1058 -1.4500 -0.1421 49 1 3.7100 -1.2204 -2.2004 50 1 3.8193 0.3088 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671179977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:31 Heat of formation + Delta-G solvation = -97.226446 kcal Electronic energy + Delta-G solvation = -30433.363937 eV Core-core repulsion = 26268.071191 eV Total energy + Delta-G solvation = -4165.292746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19409 -41.07523 -39.74323 -38.95542 -36.36746 -35.90659 -34.60571 -33.61206 -33.28529 -31.29996 -28.93923 -28.09996 -27.45430 -27.08197 -26.10350 -24.77593 -23.49883 -22.48127 -21.10510 -20.56339 -20.02867 -19.76761 -18.21986 -17.78486 -17.46232 -17.24803 -17.17608 -16.86786 -16.55635 -16.33100 -16.02221 -15.71092 -15.53967 -15.27657 -14.86394 -14.72739 -14.31663 -14.15016 -13.88725 -13.76652 -13.55267 -13.49565 -13.40165 -13.32866 -13.26442 -13.02571 -12.87335 -12.75499 -12.50812 -12.43071 -12.18582 -12.13814 -11.98746 -11.89155 -11.66450 -11.50851 -11.44316 -10.76640 -10.39810 -10.25813 -10.01238 -9.72331 -9.69152 -8.47278 -5.95527 1.36989 1.40910 1.51922 1.53215 1.82971 2.05674 2.28518 2.77290 2.84590 3.18987 3.31467 3.38170 3.48327 3.65240 3.70197 3.79661 3.96226 4.00542 4.08794 4.16683 4.24419 4.27011 4.29239 4.37029 4.42372 4.49818 4.53630 4.55704 4.62551 4.68411 4.72773 4.74965 4.80664 4.82475 4.87728 4.94877 4.98675 5.06337 5.11933 5.23180 5.29246 5.32919 5.39879 5.42126 5.84864 6.05453 6.30002 6.33656 6.60886 7.10228 7.13288 7.56621 8.13753 8.69997 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.002005 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.928122 B =13958.302359 C =14041.690061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.050 0.950 4 C -0.124 4.124 5 C -0.106 4.106 6 H 0.134 0.866 7 C 0.512 3.488 8 O -0.577 6.577 9 N -0.600 5.600 10 C 0.057 3.943 11 C 0.127 3.873 12 C 0.005 3.995 13 N -0.483 5.483 14 C 0.028 3.972 15 C 0.440 3.560 16 O -0.621 6.621 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.075 0.925 20 C -0.012 4.012 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.275 1.275 26 C 0.002 3.998 27 C -0.151 4.151 28 C 0.052 3.948 29 O -0.398 6.398 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.965 -19.052 3.659 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.068 0.932 4 C -0.162 4.162 5 C -0.127 4.127 6 H 0.151 0.849 7 C 0.302 3.698 8 O -0.456 6.456 9 N -0.332 5.332 10 C -0.084 4.084 11 C 0.022 3.978 12 C -0.125 4.125 13 N -0.206 5.206 14 C -0.103 4.103 15 C 0.227 3.773 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.093 0.907 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.200 1.200 26 C -0.127 4.127 27 C -0.189 4.189 28 C -0.024 4.024 29 O -0.318 6.318 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.128 0.872 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.604 -17.423 3.100 27.161 hybrid contribution 1.371 0.171 -0.075 1.383 sum -19.234 -17.252 3.025 26.014 Atomic orbital electron populations 1.21735 0.92270 1.03162 1.02524 1.22364 0.95893 0.95502 0.85039 0.93179 1.21986 0.93346 1.02447 0.98457 1.21502 0.97060 0.91935 1.02217 0.84855 1.21321 0.81685 0.92327 0.74455 1.90657 1.58128 1.45729 1.51108 1.47954 1.06172 1.06767 1.72308 1.22346 0.94518 0.88101 1.03410 1.22721 0.94390 0.84898 0.95759 1.24404 0.94724 0.97173 0.96184 1.68261 1.01671 1.46031 1.04642 1.22337 0.89539 0.97548 1.00926 1.20848 0.82758 0.87604 0.86053 1.90501 1.74006 1.40577 1.45638 1.41925 1.04804 1.32835 1.41650 1.19616 0.88729 1.14199 1.23724 0.90704 1.25995 0.97710 0.99004 0.98463 1.69660 1.12455 1.34410 1.39412 0.84963 0.77440 0.77956 0.78197 1.19779 1.19318 1.19991 1.24488 0.93386 0.98584 0.96240 1.22480 1.03605 1.00924 0.91854 1.22684 0.80787 0.98836 1.00130 1.87876 1.21688 1.78055 1.44143 0.90981 0.90324 0.92731 0.88509 0.90759 0.90675 0.90131 0.87510 0.88168 0.88716 0.91399 0.87236 0.89273 0.76897 0.91285 0.88821 0.88047 0.87760 0.87418 0.87167 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.56 71.98 0.69 -1.60 16 2 C 0.07 1.40 2.98 30.63 0.09 1.49 16 3 H 0.05 1.35 5.82 -2.39 -0.01 1.34 16 4 C -0.12 -1.85 4.56 30.69 0.14 -1.71 16 5 C -0.11 -1.33 2.23 -11.42 -0.03 -1.36 16 6 H 0.13 0.87 7.42 -2.38 -0.02 0.86 16 7 C 0.51 10.37 5.74 87.66 0.50 10.88 16 8 O -0.58 -16.79 13.34 -3.05 -0.04 -16.83 16 9 N -0.60 -10.58 3.09 -826.80 -2.56 -13.14 16 10 C 0.06 0.53 7.41 127.77 0.95 1.48 16 11 C 0.13 3.05 4.39 46.56 0.20 3.26 16 12 C 0.00 0.13 7.37 86.41 0.64 0.77 16 13 N -0.48 -15.37 5.65 -912.82 -5.16 -20.52 16 14 C 0.03 0.92 5.28 85.56 0.45 1.37 16 15 C 0.44 20.97 7.83 87.66 0.69 21.66 16 16 O -0.62 -35.52 16.01 -3.05 -0.05 -35.57 16 17 N -0.57 -29.21 5.29 -306.98 -1.62 -30.83 16 18 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 19 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -48.86 13.05 21.67 0.28 -48.58 16 22 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.00 0.05 7.47 86.41 0.65 0.70 16 27 C -0.15 -1.50 5.29 30.68 0.16 -1.34 16 28 C 0.05 0.87 6.62 72.01 0.48 1.35 16 29 O -0.40 -8.44 10.41 -148.98 -1.55 -9.99 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 35 H 0.07 0.58 6.90 -2.39 -0.02 0.56 16 36 H 0.08 0.69 6.36 -2.39 -0.02 0.68 16 37 H 0.11 0.38 6.05 -2.38 -0.01 0.37 16 38 H 0.10 3.00 7.24 -2.39 -0.02 2.98 16 39 H 0.09 2.14 6.05 -2.39 -0.01 2.13 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.11 3.13 8.08 -2.39 -0.02 3.11 16 42 H 0.09 2.33 7.38 -2.39 -0.02 2.31 16 43 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.10 1.67 6.75 -2.39 -0.02 1.65 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 0.68 4.49 -2.39 -0.01 0.67 16 49 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.02 0.50 7.38 -2.39 -0.02 0.48 16 Total: -1.00 -78.15 386.02 -1.55 -79.70 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.23 Total: 32.17 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.89 Total: 18.61 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -9.05 Total: -113.07 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -1.64 Total: -62.39 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -78.15 -1.55 -79.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671179977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.531 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds