Wall clock time and date at job start Tue Mar 31 2020 23:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.80492 * 2 1 4 4 C 1.54991 * 110.90936 * 236.33303 * 2 1 3 5 5 O 1.44379 * 103.49239 * 204.77897 * 4 2 1 6 6 C 1.43746 * 106.97740 * 40.05855 * 5 4 2 7 7 H 1.09001 * 110.00061 * 92.97482 * 6 5 4 8 8 C 1.50692 * 109.88234 * 214.06316 * 6 5 4 9 9 O 1.21281 * 120.00302 * 2.83092 * 8 6 5 10 10 N 1.34777 * 120.00087 * 182.83026 * 8 6 5 11 11 C 1.46504 * 119.99881 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.46874 * 174.82437 * 11 10 8 13 13 N 1.46900 * 112.84387 * 65.65282 * 12 11 10 14 14 C 1.46901 * 111.00384 * 65.52109 * 13 12 11 15 15 C 1.50693 * 109.47354 * 175.10665 * 14 13 12 16 16 O 1.21290 * 120.00293 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00004 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99899 * 179.72488 * 17 15 14 19 19 H 1.07999 * 119.99926 * 0.27635 * 18 17 15 20 20 C 1.38949 * 119.99816 * 180.27634 * 18 17 15 21 21 N 1.31411 * 120.00079 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46723 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46781 * 119.99830 * 22 20 18 25 25 H 1.48491 * 109.47412 * 240.00043 * 22 20 18 26 26 C 1.53783 * 113.61167 * 196.84791 * 12 11 10 27 27 C 1.53950 * 87.01745 * 89.23321 * 26 12 11 28 28 C 1.53771 * 113.61501 * 294.45748 * 12 11 10 29 29 C 1.54104 * 107.28873 * 333.48965 * 6 5 4 30 30 H 1.08998 * 109.47208 * 296.37372 * 1 2 3 31 31 H 1.08997 * 109.47038 * 56.37264 * 1 2 3 32 32 H 1.08999 * 109.46768 * 176.36868 * 1 2 3 33 33 H 1.09000 * 110.61709 * 323.27679 * 4 2 1 34 34 H 1.08996 * 110.62206 * 86.27589 * 4 2 1 35 35 H 0.96996 * 120.00067 * 359.97438 * 10 8 6 36 36 H 1.09008 * 109.46925 * 54.83017 * 11 10 8 37 37 H 1.08996 * 109.47008 * 294.82552 * 11 10 8 38 38 H 1.00901 * 110.99338 * 189.47264 * 13 12 11 39 39 H 1.09001 * 109.46995 * 55.10129 * 14 13 12 40 40 H 1.08998 * 109.46788 * 295.10946 * 14 13 12 41 41 H 0.97003 * 120.00206 * 0.02562 * 17 15 14 42 42 H 0.97000 * 120.00387 * 180.02562 * 21 20 18 43 43 H 1.09001 * 113.61051 * 203.74995 * 26 12 11 44 44 H 1.08991 * 113.61260 * 334.65161 * 26 12 11 45 45 H 1.09006 * 113.53695 * 270.80716 * 27 26 12 46 46 H 1.09003 * 113.74106 * 139.94309 * 27 26 12 47 47 H 1.09002 * 113.62193 * 25.34739 * 28 12 11 48 48 H 1.09003 * 113.61643 * 156.25535 * 28 12 11 49 49 H 1.09002 * 110.48765 * 120.70470 * 29 6 5 50 50 H 1.08999 * 110.48491 * 243.34912 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0832 -0.8026 -1.2050 5 8 3.3941 -1.2146 -0.7621 6 6 3.2719 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7025 8 6 4.5349 -1.2318 1.3613 9 8 5.4365 -0.6622 0.7837 10 7 4.6628 -1.5461 2.6656 11 6 5.8910 -1.2002 3.3855 12 6 5.7289 -1.5476 4.8668 13 7 5.5963 -2.9915 5.1027 14 6 6.8317 -3.6996 4.7420 15 6 6.7016 -5.1555 5.1086 16 8 5.6803 -5.5631 5.6205 17 7 7.7201 -6.0047 4.8677 18 6 7.6038 -7.3282 5.2064 19 1 6.6944 -7.6910 5.6621 20 6 8.6560 -8.2025 4.9632 21 7 9.7627 -7.7608 4.4091 22 14 8.4979 -10.0056 5.4253 23 1 7.1632 -10.2463 6.0301 24 1 8.6479 -10.8434 4.2084 25 1 9.5567 -10.3604 6.4042 26 6 6.7660 -0.8675 5.7760 27 6 5.7768 0.3066 5.8905 28 6 4.6605 -0.7056 5.5836 29 6 2.0825 -0.8008 1.2041 30 1 -0.3633 0.4565 0.9207 31 1 -0.3633 0.5691 -0.8557 32 1 -0.3633 -1.0256 -0.0651 33 1 1.4563 -1.6709 -1.4081 34 1 2.1583 -0.1673 -2.0875 35 1 3.9416 -2.0013 3.1277 36 1 6.0845 -0.1325 3.2818 37 1 6.7266 -1.7631 2.9696 38 1 5.3382 -3.1791 6.0599 39 1 7.6718 -3.2626 5.2818 40 1 7.0025 -3.6089 3.6693 41 1 8.5370 -5.6787 4.4586 42 1 10.4971 -8.3713 4.2390 43 1 6.9322 -1.3918 6.7171 44 1 7.6932 -0.6101 5.2642 45 1 5.9064 1.0621 5.1155 46 1 5.7162 0.7333 6.8917 47 1 3.8904 -0.3175 4.9169 48 1 4.2500 -1.1854 6.4721 49 1 1.3246 -1.4837 1.5881 50 1 2.4209 -0.1246 1.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673189837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:21 Heat of formation + Delta-G solvation = -101.246216 kcal Electronic energy + Delta-G solvation = -30091.907279 eV Core-core repulsion = 25926.440222 eV Total energy + Delta-G solvation = -4165.467056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70008 -39.96239 -38.37660 -37.98667 -34.43711 -34.14378 -33.80547 -33.19409 -31.22060 -30.81142 -27.67755 -26.79321 -26.56914 -25.79806 -24.34223 -23.63098 -22.30386 -21.04106 -20.35773 -19.26431 -19.02076 -17.90476 -17.54375 -16.74741 -16.48133 -16.29575 -15.76821 -15.39759 -15.10592 -14.97538 -14.59449 -14.49052 -14.39509 -14.21670 -14.07875 -13.68676 -13.43231 -13.24533 -12.93647 -12.73719 -12.56156 -12.45948 -12.36500 -11.99365 -11.90768 -11.68808 -11.57267 -11.39052 -11.17687 -11.13961 -11.10435 -11.01836 -10.76157 -10.40234 -10.35459 -10.27643 -10.23162 -9.55005 -9.53511 -9.04386 -8.47030 -8.10805 -7.97750 -6.42941 -3.84056 2.56718 2.85293 3.15325 3.26055 3.32913 3.73021 3.88141 4.02143 4.11125 4.25556 4.36630 4.39403 4.47247 4.48908 4.53925 4.63091 4.74165 4.86378 4.97260 5.07019 5.09142 5.21191 5.23720 5.28667 5.31471 5.38634 5.40965 5.43998 5.57050 5.60548 5.61921 5.64127 5.66152 5.73874 5.78511 5.82728 5.89641 5.97020 6.03927 6.16200 6.25789 6.38746 6.52352 7.15635 7.50930 7.53951 7.60762 8.04586 8.21607 8.58854 9.16049 9.52528 10.03077 10.74727 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.002572 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.285952 B =10884.742601 C =12317.063190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.048 3.952 5 O -0.346 6.346 6 C 0.060 3.940 7 H 0.098 0.902 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.712 5.712 11 C 0.153 3.847 12 C 0.080 3.920 13 N -0.653 5.653 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.586 6.586 17 N -0.562 5.562 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.900 5.900 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.166 4.166 27 C -0.139 4.139 28 C -0.127 4.127 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.408 0.592 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.355 0.645 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.487 18.803 -4.078 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.105 0.895 4 C -0.029 4.029 5 O -0.264 6.264 6 C -0.001 4.001 7 H 0.115 0.885 8 C 0.297 3.703 9 O -0.403 6.403 10 N -0.365 5.365 11 C 0.029 3.971 12 C -0.012 4.012 13 N -0.286 5.286 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.471 6.471 17 N -0.198 5.198 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.541 5.541 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.206 4.206 27 C -0.177 4.177 28 C -0.165 4.165 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.447 18.669 -4.944 24.118 hybrid contribution 0.747 -0.800 1.030 1.503 sum -13.701 17.869 -3.914 22.854 Atomic orbital electron populations 1.21728 0.93540 1.02370 1.02319 1.22742 0.96732 1.00432 0.94590 0.89465 1.23730 0.84116 0.97724 0.97344 1.89022 1.28908 1.86198 1.22285 1.22618 0.93252 1.00397 0.83840 0.88478 1.20398 0.88677 0.79244 0.82021 1.90715 1.41326 1.40981 1.67264 1.45695 1.20027 1.60866 1.09958 1.21015 0.87298 1.00234 0.88573 1.22548 0.96828 0.88266 0.93599 1.59980 1.32954 1.04796 1.30837 1.21653 0.91196 0.93818 1.01592 1.19792 0.85260 0.87083 0.85310 1.90514 1.29902 1.78207 1.48493 1.41878 1.15255 1.08496 1.54209 1.19740 1.02150 0.83336 1.37672 0.87873 1.25278 0.94999 1.00616 0.97075 1.69620 1.05020 1.36442 1.43044 0.85801 0.78480 0.81916 0.78154 1.19221 1.20710 1.20757 1.23640 0.98327 0.98094 1.00587 1.22790 0.96522 0.96449 1.01971 1.23057 0.96504 0.96476 1.00499 1.23028 0.96709 0.99459 0.98885 0.92047 0.92157 0.92118 0.91690 0.88639 0.75624 0.90795 0.91125 0.82388 0.93541 0.89704 0.77435 0.91869 0.89493 0.91003 0.90087 0.91216 0.91005 0.89404 0.89238 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.19 37.16 0.34 -0.38 16 2 C -0.13 -0.90 3.72 -88.62 -0.33 -1.23 16 3 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.05 0.40 7.17 38.21 0.27 0.68 16 5 O -0.35 -4.53 10.74 -54.80 -0.59 -5.11 16 6 C 0.06 0.67 3.84 -27.31 -0.10 0.56 16 7 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.51 7.02 6.95 -10.99 -0.08 6.95 16 9 O -0.53 -9.51 16.52 -14.02 -0.23 -9.74 16 10 N -0.71 -8.35 5.25 -60.29 -0.32 -8.67 16 11 C 0.15 1.85 4.86 -4.04 -0.02 1.83 16 12 C 0.08 0.89 0.63 -130.79 -0.08 0.81 16 13 N -0.65 -9.48 6.12 -100.40 -0.61 -10.10 16 14 C 0.05 0.85 5.75 -4.98 -0.03 0.82 16 15 C 0.44 10.17 7.81 -10.99 -0.09 10.09 16 16 O -0.59 -15.42 15.67 5.55 0.09 -15.33 16 17 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.17 -1.69 6.47 -25.83 -0.17 -1.86 16 27 C -0.14 -1.18 7.74 -25.83 -0.20 -1.38 16 28 C -0.13 -1.15 7.26 -25.92 -0.19 -1.34 16 29 C -0.14 -1.09 6.20 -25.20 -0.16 -1.25 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.06 0.46 8.01 -51.93 -0.42 0.05 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 4.25 8.44 -40.82 -0.34 3.91 16 36 H 0.07 0.87 7.31 -51.92 -0.38 0.49 16 37 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 38 H 0.36 5.42 8.05 -39.29 -0.32 5.11 16 39 H 0.05 0.73 7.35 -51.93 -0.38 0.35 16 40 H 0.08 1.44 6.86 -51.93 -0.36 1.08 16 41 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.08 0.66 7.61 -51.93 -0.40 0.26 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 48 H 0.09 0.79 8.00 -51.93 -0.42 0.38 16 49 H 0.09 0.53 7.86 -51.93 -0.41 0.12 16 50 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -33.94 404.68 -9.19 -43.14 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -8.21 Total: 15.54 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.06 Total: 6.33 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.27 Total: -56.95 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.73 Total: -30.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.94 -9.19 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.107 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds