Wall clock time and date at job start Tue Mar 31 2020 23:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.80492 * 2 1 4 4 C 1.54991 * 110.90936 * 236.33303 * 2 1 3 5 5 O 1.44379 * 103.49239 * 204.77897 * 4 2 1 6 6 C 1.43746 * 106.97740 * 40.05855 * 5 4 2 7 7 H 1.09001 * 110.00061 * 92.97482 * 6 5 4 8 8 C 1.50692 * 109.88234 * 214.06316 * 6 5 4 9 9 O 1.21281 * 120.00302 * 2.83092 * 8 6 5 10 10 N 1.34777 * 120.00087 * 182.83026 * 8 6 5 11 11 C 1.46504 * 119.99881 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.46874 * 174.82437 * 11 10 8 13 13 N 1.46900 * 112.84387 * 65.65282 * 12 11 10 14 14 C 1.46901 * 111.00384 * 65.52109 * 13 12 11 15 15 C 1.50693 * 109.47354 * 175.10665 * 14 13 12 16 16 O 1.21290 * 120.00293 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00004 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99899 * 179.72488 * 17 15 14 19 19 H 1.07999 * 119.99926 * 0.27635 * 18 17 15 20 20 C 1.38949 * 119.99816 * 180.27634 * 18 17 15 21 21 N 1.31411 * 120.00079 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00008 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46723 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46781 * 119.99830 * 22 20 18 25 25 H 1.48491 * 109.47412 * 240.00043 * 22 20 18 26 26 C 1.53783 * 113.61167 * 196.84791 * 12 11 10 27 27 C 1.53950 * 87.01745 * 89.23321 * 26 12 11 28 28 C 1.53771 * 113.61501 * 294.45748 * 12 11 10 29 29 C 1.54104 * 107.28873 * 333.48965 * 6 5 4 30 30 H 1.08998 * 109.47208 * 296.37372 * 1 2 3 31 31 H 1.08997 * 109.47038 * 56.37264 * 1 2 3 32 32 H 1.08999 * 109.46768 * 176.36868 * 1 2 3 33 33 H 1.09000 * 110.61709 * 323.27679 * 4 2 1 34 34 H 1.08996 * 110.62206 * 86.27589 * 4 2 1 35 35 H 0.96996 * 120.00067 * 359.97438 * 10 8 6 36 36 H 1.09008 * 109.46925 * 54.83017 * 11 10 8 37 37 H 1.08996 * 109.47008 * 294.82552 * 11 10 8 38 38 H 1.00901 * 110.99338 * 189.47264 * 13 12 11 39 39 H 1.09001 * 109.46995 * 55.10129 * 14 13 12 40 40 H 1.08998 * 109.46788 * 295.10946 * 14 13 12 41 41 H 0.97003 * 120.00206 * 0.02562 * 17 15 14 42 42 H 0.97000 * 120.00387 * 180.02562 * 21 20 18 43 43 H 1.09001 * 113.61051 * 203.74995 * 26 12 11 44 44 H 1.08991 * 113.61260 * 334.65161 * 26 12 11 45 45 H 1.09006 * 113.53695 * 270.80716 * 27 26 12 46 46 H 1.09003 * 113.74106 * 139.94309 * 27 26 12 47 47 H 1.09002 * 113.62193 * 25.34739 * 28 12 11 48 48 H 1.09003 * 113.61643 * 156.25535 * 28 12 11 49 49 H 1.09002 * 110.48765 * 120.70470 * 29 6 5 50 50 H 1.08999 * 110.48491 * 243.34912 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0832 -0.8026 -1.2050 5 8 3.3941 -1.2146 -0.7621 6 6 3.2719 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7025 8 6 4.5349 -1.2318 1.3613 9 8 5.4365 -0.6622 0.7837 10 7 4.6628 -1.5461 2.6656 11 6 5.8910 -1.2002 3.3855 12 6 5.7289 -1.5476 4.8668 13 7 5.5963 -2.9915 5.1027 14 6 6.8317 -3.6996 4.7420 15 6 6.7016 -5.1555 5.1086 16 8 5.6803 -5.5631 5.6205 17 7 7.7201 -6.0047 4.8677 18 6 7.6038 -7.3282 5.2064 19 1 6.6944 -7.6910 5.6621 20 6 8.6560 -8.2025 4.9632 21 7 9.7627 -7.7608 4.4091 22 14 8.4979 -10.0056 5.4253 23 1 7.1632 -10.2463 6.0301 24 1 8.6479 -10.8434 4.2084 25 1 9.5567 -10.3604 6.4042 26 6 6.7660 -0.8675 5.7760 27 6 5.7768 0.3066 5.8905 28 6 4.6605 -0.7056 5.5836 29 6 2.0825 -0.8008 1.2041 30 1 -0.3633 0.4565 0.9207 31 1 -0.3633 0.5691 -0.8557 32 1 -0.3633 -1.0256 -0.0651 33 1 1.4563 -1.6709 -1.4081 34 1 2.1583 -0.1673 -2.0875 35 1 3.9416 -2.0013 3.1277 36 1 6.0845 -0.1325 3.2818 37 1 6.7266 -1.7631 2.9696 38 1 5.3382 -3.1791 6.0599 39 1 7.6718 -3.2626 5.2818 40 1 7.0025 -3.6089 3.6693 41 1 8.5370 -5.6787 4.4586 42 1 10.4971 -8.3713 4.2390 43 1 6.9322 -1.3918 6.7171 44 1 7.6932 -0.6101 5.2642 45 1 5.9064 1.0621 5.1155 46 1 5.7162 0.7333 6.8917 47 1 3.8904 -0.3175 4.9169 48 1 4.2500 -1.1854 6.4721 49 1 1.3246 -1.4837 1.5881 50 1 2.4209 -0.1246 1.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673189837.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:20 Heat of formation + Delta-G solvation = -126.861345 kcal Electronic energy + Delta-G solvation = -30093.018034 eV Core-core repulsion = 25926.440222 eV Total energy + Delta-G solvation = -4166.577812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64782 -40.89096 -39.89345 -39.26029 -36.06375 -35.45216 -34.59149 -34.46826 -33.25118 -31.61337 -28.86335 -28.00083 -27.17860 -26.76222 -25.96331 -24.49667 -23.25058 -21.71389 -21.28754 -21.07021 -19.96122 -19.89719 -18.51728 -18.01773 -17.45201 -17.17874 -16.89666 -16.73341 -16.36234 -16.05670 -15.95593 -15.87025 -15.69003 -15.29970 -15.00636 -14.86600 -14.53091 -14.28675 -13.92477 -13.75774 -13.72195 -13.54861 -13.26723 -13.16421 -13.08367 -12.94079 -12.71528 -12.47493 -12.42295 -12.26750 -12.13488 -11.98171 -11.77193 -11.68121 -11.54082 -11.51940 -11.23651 -11.11055 -10.54267 -10.36187 -10.09951 -10.03457 -9.30160 -8.48055 -5.97143 1.35649 1.40953 1.51917 1.55324 1.92060 2.02628 2.27642 2.84565 3.01693 3.19086 3.39194 3.46436 3.54041 3.61046 3.68353 3.79430 3.80896 3.89122 3.92950 4.22766 4.26655 4.34085 4.43183 4.46658 4.50768 4.54108 4.54721 4.66425 4.70439 4.76543 4.80173 4.82146 4.85322 4.90283 5.06585 5.08307 5.10013 5.17109 5.23379 5.35144 5.37977 5.39844 5.44227 5.77598 5.87734 6.07439 6.39952 6.53835 6.57112 7.10505 7.19070 7.53957 8.07804 8.69652 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.002572 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.285952 B =10884.742601 C =12317.063190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 H 0.079 0.921 4 C 0.040 3.960 5 O -0.386 6.386 6 C 0.058 3.942 7 H 0.107 0.893 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.700 5.700 11 C 0.154 3.846 12 C 0.079 3.921 13 N -0.657 5.657 14 C 0.067 3.933 15 C 0.440 3.560 16 O -0.619 6.619 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.081 0.919 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.168 4.168 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.136 4.136 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.417 0.583 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.353 0.647 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.113 0.887 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 19.525 -3.425 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.097 0.903 4 C -0.036 4.036 5 O -0.305 6.305 6 C -0.003 4.003 7 H 0.124 0.876 8 C 0.294 3.706 9 O -0.458 6.458 10 N -0.352 5.352 11 C 0.029 3.971 12 C -0.013 4.013 13 N -0.289 5.289 14 C -0.065 4.065 15 C 0.228 3.772 16 O -0.505 6.505 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.208 4.208 27 C -0.166 4.166 28 C -0.156 4.156 29 C -0.173 4.173 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.173 0.827 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.131 0.869 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.949 19.408 -4.274 25.482 hybrid contribution 1.194 -0.974 0.807 1.739 sum -14.756 18.434 -3.468 23.865 Atomic orbital electron populations 1.21703 0.91604 1.03040 1.03074 1.22715 0.98172 0.99597 0.93532 0.90251 1.23984 0.82771 0.98700 0.98168 1.88981 1.31596 1.86584 1.23306 1.22754 0.92962 1.01360 0.83272 0.87587 1.20993 0.89036 0.78259 0.82311 1.90683 1.43213 1.43506 1.68356 1.45644 1.20024 1.60042 1.09518 1.20989 0.86766 1.00282 0.89046 1.22635 0.99061 0.86348 0.93262 1.59962 1.31544 1.06787 1.30654 1.21427 0.93226 0.89977 1.01861 1.20777 0.83963 0.89091 0.83417 1.90482 1.30997 1.79491 1.49545 1.41974 1.15981 1.08263 1.54948 1.19709 1.02046 0.84978 1.39311 0.90056 1.26084 0.94376 1.04523 0.96525 1.69688 1.05470 1.37921 1.43249 0.84853 0.78395 0.76791 0.78204 1.19512 1.19791 1.19582 1.23641 0.98436 0.98800 0.99953 1.22753 0.94971 0.95835 1.03029 1.23046 0.96396 0.95753 1.00420 1.23063 0.95727 0.99598 0.98953 0.91288 0.91457 0.91468 0.90204 0.88053 0.74635 0.90108 0.93345 0.82669 0.91767 0.89394 0.77207 0.91338 0.89785 0.91084 0.89462 0.89847 0.89855 0.88969 0.86864 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.19 71.98 0.66 -0.37 16 2 C -0.12 -1.53 3.72 -9.50 -0.04 -1.57 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.04 0.64 7.17 72.66 0.52 1.16 16 5 O -0.39 -10.15 10.74 -130.26 -1.40 -11.55 16 6 C 0.06 1.24 3.84 30.22 0.12 1.36 16 7 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 8 C 0.51 13.98 6.95 87.65 0.61 14.59 16 9 O -0.58 -21.48 16.52 15.68 0.26 -21.23 16 10 N -0.70 -15.94 5.25 -463.05 -2.43 -18.38 16 11 C 0.15 3.63 4.86 86.38 0.42 4.05 16 12 C 0.08 1.64 0.63 4.05 0.00 1.64 16 13 N -0.66 -18.51 6.12 -471.55 -2.89 -21.40 16 14 C 0.07 2.29 5.75 85.55 0.49 2.78 16 15 C 0.44 20.62 7.81 87.65 0.68 21.31 16 16 O -0.62 -33.04 15.67 -3.06 -0.05 -33.09 16 17 N -0.57 -29.69 5.29 -306.99 -1.62 -31.31 16 18 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 22 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C -0.17 -3.14 6.47 31.18 0.20 -2.94 16 27 C -0.13 -1.83 7.74 31.18 0.24 -1.59 16 28 C -0.12 -1.84 7.26 31.12 0.23 -1.62 16 29 C -0.14 -1.82 6.20 31.58 0.20 -1.63 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 33 H 0.08 1.02 8.01 -2.39 -0.02 1.00 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 8.11 8.44 -92.71 -0.78 7.33 16 36 H 0.08 1.83 7.31 -2.38 -0.02 1.81 16 37 H 0.05 1.37 6.74 -2.39 -0.02 1.36 16 38 H 0.35 10.45 8.05 -89.69 -0.72 9.73 16 39 H 0.06 1.98 7.35 -2.39 -0.02 1.96 16 40 H 0.09 2.99 6.86 -2.39 -0.02 2.97 16 41 H 0.39 19.70 7.90 -92.71 -0.73 18.97 16 42 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 45 H 0.09 1.18 7.61 -2.38 -0.02 1.16 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 1.14 7.93 -2.39 -0.02 1.12 16 48 H 0.09 1.42 8.00 -2.39 -0.02 1.40 16 49 H 0.11 0.99 7.86 -2.39 -0.02 0.97 16 50 H 0.08 1.11 7.69 -2.39 -0.02 1.09 16 Total: -1.00 -75.09 404.68 -1.46 -76.55 By element: Atomic # 1 Polarization: 47.97 SS G_CDS: -1.26 Total: 46.70 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 5.62 Total: 18.83 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.66 Total: -121.34 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -1.19 Total: -65.87 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -75.09 -1.46 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673189837.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.310 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds