Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 115.56594 * 2 1 4 4 C 1.53075 * 117.49341 * 145.70660 * 2 1 3 5 5 C 1.53003 * 59.98513 * 107.48634 * 4 2 1 6 6 H 1.08997 * 117.49898 * 252.50414 * 5 4 2 7 7 C 1.50691 * 117.49821 * 107.49884 * 5 4 2 8 8 O 1.21283 * 120.00382 * 291.25674 * 7 5 4 9 9 N 1.34779 * 120.00268 * 111.25871 * 7 5 4 10 10 C 1.46995 * 120.60954 * 0.02562 * 9 7 5 11 11 C 1.53196 * 108.73708 * 126.39083 * 10 9 7 12 12 C 1.53039 * 109.33748 * 54.62190 * 11 10 9 13 13 O 1.42901 * 109.45873 * 58.62794 * 12 11 10 14 14 C 1.53002 * 109.45721 * 178.59861 * 12 11 10 15 15 N 1.46907 * 109.46641 * 180.02562 * 14 12 11 16 16 C 1.46899 * 110.99635 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47062 * 180.02562 * 16 15 14 18 18 O 1.21287 * 120.00373 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99466 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00150 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00041 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99962 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46683 * 90.00010 * 24 22 20 26 26 H 1.48494 * 109.47257 * 210.00190 * 24 22 20 27 27 H 1.48503 * 109.47370 * 330.00478 * 24 22 20 28 28 C 1.53033 * 109.54130 * 298.61926 * 12 11 10 29 29 C 1.46925 * 120.63449 * 180.02562 * 9 7 5 30 30 H 1.09002 * 109.47189 * 205.68905 * 1 2 3 31 31 H 1.08992 * 109.46956 * 325.69050 * 1 2 3 32 32 H 1.09004 * 109.46774 * 85.68799 * 1 2 3 33 33 H 1.09004 * 117.49178 * 0.02562 * 4 2 1 34 34 H 1.08992 * 117.53614 * 214.95374 * 4 2 1 35 35 H 1.09001 * 109.63157 * 6.60495 * 10 9 7 36 36 H 1.08996 * 109.58534 * 246.14994 * 10 9 7 37 37 H 1.09002 * 109.49815 * 294.65503 * 11 10 9 38 38 H 1.09000 * 109.49595 * 174.58900 * 11 10 9 39 39 H 0.96706 * 113.99845 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47146 * 299.99541 * 14 12 11 41 41 H 1.08999 * 109.47143 * 60.00200 * 14 12 11 42 42 H 1.00894 * 111.00165 * 303.94863 * 15 14 12 43 43 H 1.08998 * 109.47343 * 299.99837 * 16 15 14 44 44 H 1.09001 * 109.47354 * 59.99777 * 16 15 14 45 45 H 0.97002 * 119.99659 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00261 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.50670 * 181.31633 * 28 12 11 48 48 H 1.08998 * 109.50149 * 301.38469 * 28 12 11 49 49 H 1.09004 * 109.58683 * 113.84331 * 29 9 7 50 50 H 1.08994 * 109.70376 * 353.48184 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2367 -1.1218 0.7651 5 6 2.2365 -1.1211 -0.7650 6 1 1.6112 -1.8583 -1.2685 7 6 3.5292 -0.7812 -1.4607 8 8 3.9710 0.3468 -1.4025 9 7 4.1946 -1.7307 -2.1479 10 6 3.6713 -3.1020 -2.2278 11 6 3.5778 -3.5079 -3.7021 12 6 4.9421 -3.3155 -4.3682 13 8 5.9194 -4.1062 -3.6885 14 6 4.8608 -3.7531 -5.8320 15 7 6.1706 -3.5691 -6.4715 16 6 6.1302 -3.9793 -7.8814 17 6 7.4883 -3.7773 -8.5024 18 8 8.4001 -3.3347 -7.8362 19 7 7.6896 -4.0875 -9.7985 20 6 8.9251 -3.9032 -10.3636 21 1 9.7369 -3.5091 -9.7703 22 6 9.1327 -4.2235 -11.6997 23 7 10.3170 -4.0473 -12.2412 24 14 7.7288 -4.9059 -12.7256 25 1 6.9937 -3.7856 -13.3658 26 1 8.2736 -5.8042 -13.7750 27 1 6.8028 -5.6701 -11.8517 28 6 5.3423 -1.8401 -4.2985 29 6 5.4565 -1.4148 -2.8309 30 1 -0.3634 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5792 32 1 -0.3633 0.0773 -1.0248 33 1 1.6112 -1.8596 1.2677 34 1 3.1720 -0.8770 1.2683 35 1 2.6811 -3.1431 -1.7741 36 1 4.3440 -3.7810 -1.7039 37 1 2.8368 -2.8860 -4.2043 38 1 3.2826 -4.5547 -3.7732 39 1 6.8103 -4.0330 -4.0575 40 1 4.5771 -4.8043 -5.8818 41 1 4.1151 -3.1505 -6.3505 42 1 6.4859 -2.6149 -6.3818 43 1 5.8546 -5.0319 -7.9459 44 1 5.3936 -3.3776 -8.4140 45 1 6.9604 -4.4411 -10.3315 46 1 10.4619 -4.2706 -13.1739 47 1 6.3031 -1.6998 -4.7936 48 1 4.5850 -1.2339 -4.7956 49 1 6.2746 -1.9564 -2.3561 50 1 5.6465 -0.3430 -2.7747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674091868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = -90.139391 kcal Electronic energy + Delta-G solvation = -29641.318401 eV Core-core repulsion = 25476.332973 eV Total energy + Delta-G solvation = -4164.985428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82707 -39.35094 -38.40489 -37.14384 -35.89879 -34.78099 -33.88880 -31.97187 -31.67820 -31.61563 -29.22840 -28.30977 -26.02283 -24.95975 -24.03234 -22.97552 -22.41073 -21.26232 -20.38957 -19.46209 -19.15455 -18.46242 -17.76346 -16.79612 -16.41852 -16.00353 -15.70273 -15.53771 -15.21312 -14.90742 -14.82003 -14.53956 -14.39609 -13.95913 -13.85968 -13.71063 -13.53558 -13.37528 -13.10458 -12.99099 -12.74437 -12.51005 -12.43353 -12.20858 -12.01051 -11.87199 -11.83836 -11.77777 -11.48587 -11.39141 -11.19325 -10.80395 -10.73082 -10.62740 -10.42008 -10.04141 -9.99916 -9.91883 -9.61496 -8.89617 -8.65705 -8.30489 -8.21559 -6.34693 -3.86430 2.20850 2.65678 2.99459 3.03472 3.12231 3.40122 3.68397 3.89297 4.01977 4.06805 4.11464 4.31731 4.33826 4.44382 4.55457 4.62181 4.67692 4.74013 4.84001 4.89140 5.01759 5.12932 5.14572 5.17007 5.23876 5.27907 5.32182 5.33250 5.39126 5.49941 5.51034 5.55986 5.58661 5.62281 5.65835 5.73225 5.76098 5.82778 5.87052 5.89516 5.99081 6.27085 6.91347 7.13667 7.40460 7.53702 7.70373 7.92337 8.10196 8.55188 8.90785 9.38160 9.77366 10.78285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.001828 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.823105 B =15310.227169 C =15466.428364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.193 4.193 6 H 0.124 0.876 7 C 0.543 3.457 8 O -0.545 6.545 9 N -0.605 5.605 10 C 0.114 3.886 11 C -0.121 4.121 12 C 0.143 3.857 13 O -0.554 6.554 14 C 0.032 3.968 15 N -0.670 5.670 16 C 0.049 3.951 17 C 0.449 3.551 18 O -0.566 6.566 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.166 4.166 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.390 0.610 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.349 0.651 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.612 1.602 21.776 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.214 4.214 6 H 0.142 0.858 7 C 0.332 3.668 8 O -0.422 6.422 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.160 4.160 12 C 0.101 3.899 13 O -0.362 6.362 14 C -0.098 4.098 15 N -0.303 5.303 16 C -0.083 4.083 17 C 0.234 3.766 18 O -0.448 6.448 19 N -0.228 5.228 20 C -0.435 4.435 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.205 4.205 29 C -0.003 4.003 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.240 0.760 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.170 0.830 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.846 1.725 22.626 31.499 hybrid contribution -0.996 0.073 -2.105 2.330 sum -22.842 1.798 20.521 30.759 Atomic orbital electron populations 1.21403 0.92166 1.02265 1.02242 1.22403 0.95240 0.95107 1.01394 0.86520 1.23111 1.03163 1.01565 0.90669 1.22342 0.97893 1.05299 0.95869 0.85789 1.19671 0.84571 0.84284 0.78291 1.90688 1.68768 1.20935 1.61846 1.48045 1.23908 1.10261 1.51554 1.21712 0.99976 0.82484 0.96725 1.21897 0.95376 1.02919 0.95789 1.20989 0.89372 0.89245 0.90251 1.86370 1.21871 1.69080 1.58870 1.22694 0.90799 1.01974 0.94355 1.60057 1.25370 1.30432 1.14489 1.21693 0.96466 1.01633 0.88553 1.19674 0.89634 0.84670 0.82591 1.90560 1.44157 1.48695 1.61347 1.42205 1.12192 1.58763 1.09669 1.19434 0.88006 1.41125 0.94947 0.86248 1.25043 0.96747 0.97696 0.96631 1.69618 1.21142 1.47338 1.13853 0.86669 0.82115 0.79630 0.80952 1.19659 1.20113 1.19494 1.22662 1.03579 0.97016 0.97239 1.21502 0.85226 1.02260 0.91340 0.92321 0.91620 0.91930 0.87732 0.88273 0.89722 0.90073 0.90424 0.89654 0.75966 0.90065 0.94764 0.83007 0.89373 0.93701 0.79692 0.91565 0.89362 0.90903 0.90627 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 2 C -0.12 -0.89 5.92 -90.58 -0.54 -1.43 16 3 H 0.12 1.06 7.67 -51.93 -0.40 0.66 16 4 C -0.15 -0.94 9.88 -26.69 -0.26 -1.21 16 5 C -0.19 -1.47 4.84 -91.77 -0.44 -1.91 16 6 H 0.12 0.70 6.57 -51.93 -0.34 0.36 16 7 C 0.54 5.97 7.48 -10.99 -0.08 5.89 16 8 O -0.54 -8.02 15.67 5.55 0.09 -7.94 16 9 N -0.60 -5.87 2.97 -172.70 -0.51 -6.38 16 10 C 0.11 0.84 6.11 -3.67 -0.02 0.82 16 11 C -0.12 -0.91 5.11 -26.61 -0.14 -1.05 16 12 C 0.14 1.35 0.78 -90.58 -0.07 1.28 16 13 O -0.55 -6.02 11.70 -35.23 -0.41 -6.43 16 14 C 0.03 0.33 4.89 -3.82 -0.02 0.32 16 15 N -0.67 -9.29 5.52 -115.05 -0.64 -9.92 16 16 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 17 C 0.45 9.86 7.82 -10.99 -0.09 9.78 16 18 O -0.57 -14.69 15.78 5.55 0.09 -14.60 16 19 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 20 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 24 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 28 C -0.17 -1.63 4.79 -26.60 -0.13 -1.76 16 29 C 0.12 1.24 6.19 -3.70 -0.02 1.22 16 30 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.45 5.52 -51.93 -0.29 0.16 16 36 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 4.31 8.49 45.56 0.39 4.69 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.35 5.04 6.44 -39.30 -0.25 4.79 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.09 0.92 6.50 -51.93 -0.34 0.58 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.79 7.81 -51.93 -0.41 0.38 16 50 H 0.09 1.08 7.01 -51.93 -0.36 0.71 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -34.03 397.65 -8.35 -42.39 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.25 Total: 16.27 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.71 Total: 4.75 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.43 Total: -54.85 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.24 Total: -28.96 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.03 -8.35 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674091868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.753 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds