Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 115.56594 * 2 1 4 4 C 1.53075 * 117.49341 * 145.70660 * 2 1 3 5 5 C 1.53003 * 59.98513 * 107.48634 * 4 2 1 6 6 H 1.08997 * 117.49898 * 252.50414 * 5 4 2 7 7 C 1.50691 * 117.49821 * 107.49884 * 5 4 2 8 8 O 1.21283 * 120.00382 * 291.25674 * 7 5 4 9 9 N 1.34779 * 120.00268 * 111.25871 * 7 5 4 10 10 C 1.46995 * 120.60954 * 0.02562 * 9 7 5 11 11 C 1.53196 * 108.73708 * 126.39083 * 10 9 7 12 12 C 1.53039 * 109.33748 * 54.62190 * 11 10 9 13 13 O 1.42901 * 109.45873 * 58.62794 * 12 11 10 14 14 C 1.53002 * 109.45721 * 178.59861 * 12 11 10 15 15 N 1.46907 * 109.46641 * 180.02562 * 14 12 11 16 16 C 1.46899 * 110.99635 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47062 * 180.02562 * 16 15 14 18 18 O 1.21287 * 120.00373 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00274 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99466 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00150 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00041 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99962 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46683 * 90.00010 * 24 22 20 26 26 H 1.48494 * 109.47257 * 210.00190 * 24 22 20 27 27 H 1.48503 * 109.47370 * 330.00478 * 24 22 20 28 28 C 1.53033 * 109.54130 * 298.61926 * 12 11 10 29 29 C 1.46925 * 120.63449 * 180.02562 * 9 7 5 30 30 H 1.09002 * 109.47189 * 205.68905 * 1 2 3 31 31 H 1.08992 * 109.46956 * 325.69050 * 1 2 3 32 32 H 1.09004 * 109.46774 * 85.68799 * 1 2 3 33 33 H 1.09004 * 117.49178 * 0.02562 * 4 2 1 34 34 H 1.08992 * 117.53614 * 214.95374 * 4 2 1 35 35 H 1.09001 * 109.63157 * 6.60495 * 10 9 7 36 36 H 1.08996 * 109.58534 * 246.14994 * 10 9 7 37 37 H 1.09002 * 109.49815 * 294.65503 * 11 10 9 38 38 H 1.09000 * 109.49595 * 174.58900 * 11 10 9 39 39 H 0.96706 * 113.99845 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47146 * 299.99541 * 14 12 11 41 41 H 1.08999 * 109.47143 * 60.00200 * 14 12 11 42 42 H 1.00894 * 111.00165 * 303.94863 * 15 14 12 43 43 H 1.08998 * 109.47343 * 299.99837 * 16 15 14 44 44 H 1.09001 * 109.47354 * 59.99777 * 16 15 14 45 45 H 0.97002 * 119.99659 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00261 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.50670 * 181.31633 * 28 12 11 48 48 H 1.08998 * 109.50149 * 301.38469 * 28 12 11 49 49 H 1.09004 * 109.58683 * 113.84331 * 29 9 7 50 50 H 1.08994 * 109.70376 * 353.48184 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2367 -1.1218 0.7651 5 6 2.2365 -1.1211 -0.7650 6 1 1.6112 -1.8583 -1.2685 7 6 3.5292 -0.7812 -1.4607 8 8 3.9710 0.3468 -1.4025 9 7 4.1946 -1.7307 -2.1479 10 6 3.6713 -3.1020 -2.2278 11 6 3.5778 -3.5079 -3.7021 12 6 4.9421 -3.3155 -4.3682 13 8 5.9194 -4.1062 -3.6885 14 6 4.8608 -3.7531 -5.8320 15 7 6.1706 -3.5691 -6.4715 16 6 6.1302 -3.9793 -7.8814 17 6 7.4883 -3.7773 -8.5024 18 8 8.4001 -3.3347 -7.8362 19 7 7.6896 -4.0875 -9.7985 20 6 8.9251 -3.9032 -10.3636 21 1 9.7369 -3.5091 -9.7703 22 6 9.1327 -4.2235 -11.6997 23 7 10.3170 -4.0473 -12.2412 24 14 7.7288 -4.9059 -12.7256 25 1 6.9937 -3.7856 -13.3658 26 1 8.2736 -5.8042 -13.7750 27 1 6.8028 -5.6701 -11.8517 28 6 5.3423 -1.8401 -4.2985 29 6 5.4565 -1.4148 -2.8309 30 1 -0.3634 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5792 32 1 -0.3633 0.0773 -1.0248 33 1 1.6112 -1.8596 1.2677 34 1 3.1720 -0.8770 1.2683 35 1 2.6811 -3.1431 -1.7741 36 1 4.3440 -3.7810 -1.7039 37 1 2.8368 -2.8860 -4.2043 38 1 3.2826 -4.5547 -3.7732 39 1 6.8103 -4.0330 -4.0575 40 1 4.5771 -4.8043 -5.8818 41 1 4.1151 -3.1505 -6.3505 42 1 6.4859 -2.6149 -6.3818 43 1 5.8546 -5.0319 -7.9459 44 1 5.3936 -3.3776 -8.4140 45 1 6.9604 -4.4411 -10.3315 46 1 10.4619 -4.2706 -13.1739 47 1 6.3031 -1.6998 -4.7936 48 1 4.5850 -1.2339 -4.7956 49 1 6.2746 -1.9564 -2.3561 50 1 5.6465 -0.3430 -2.7747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674091868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = -117.758032 kcal Electronic energy + Delta-G solvation = -29642.516035 eV Core-core repulsion = 25476.332973 eV Total energy + Delta-G solvation = -4166.183063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60653 -40.42905 -39.87718 -37.81231 -36.85770 -36.12022 -35.53216 -33.75712 -32.79235 -32.33947 -29.85736 -29.30474 -27.35675 -25.78439 -25.38978 -23.79243 -23.23422 -21.82610 -21.31283 -21.09969 -20.32094 -19.87285 -18.50369 -18.06120 -17.41566 -17.17603 -16.81832 -16.68511 -16.36607 -15.98129 -15.77222 -15.49844 -15.33799 -15.04556 -14.96716 -14.68257 -14.56071 -14.47526 -14.14219 -13.97812 -13.84506 -13.67428 -13.31185 -13.23354 -13.01300 -12.88156 -12.74031 -12.64500 -12.42064 -12.35531 -12.23334 -12.15865 -11.99186 -11.52418 -11.51902 -11.32393 -10.94975 -10.84702 -10.75168 -10.42511 -10.25782 -9.69113 -9.39509 -8.41996 -6.03158 1.29767 1.35025 1.42508 1.44291 1.91570 1.94847 2.22478 2.67581 2.83346 3.14518 3.26304 3.37165 3.46490 3.71763 3.74327 3.80058 3.84710 3.87176 4.04861 4.12166 4.16008 4.27374 4.40092 4.41860 4.44606 4.49491 4.55599 4.63767 4.65744 4.71278 4.78409 4.83618 4.86759 4.92658 4.95448 4.97047 5.03047 5.09639 5.22632 5.29497 5.42226 5.50260 5.52034 5.85584 5.98634 6.29932 6.38210 6.58431 6.84343 6.87230 7.10920 7.38838 7.95208 8.75582 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.001828 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.823105 B =15310.227169 C =15466.428364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 H 0.088 0.912 4 C -0.135 4.135 5 C -0.195 4.195 6 H 0.154 0.846 7 C 0.534 3.466 8 O -0.595 6.595 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.118 4.118 12 C 0.144 3.856 13 O -0.561 6.561 14 C 0.037 3.963 15 N -0.684 5.684 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.613 6.613 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.230 1.230 28 C -0.158 4.158 29 C 0.119 3.881 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.387 0.613 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.343 0.657 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.607 -0.779 21.783 35.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.151 4.151 3 H 0.106 0.894 4 C -0.173 4.173 5 C -0.215 4.215 6 H 0.171 0.829 7 C 0.324 3.676 8 O -0.476 6.476 9 N -0.333 5.333 10 C -0.009 4.009 11 C -0.156 4.156 12 C 0.102 3.898 13 O -0.369 6.369 14 C -0.092 4.092 15 N -0.318 5.318 16 C -0.069 4.069 17 C 0.235 3.765 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.197 4.197 29 C -0.004 4.004 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.163 0.837 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.880 -0.692 22.657 35.162 hybrid contribution 0.695 0.896 -1.977 2.279 sum -26.185 0.204 20.681 33.367 Atomic orbital electron populations 1.21392 0.90125 1.03402 1.02575 1.22419 0.96694 0.93989 1.01950 0.89399 1.23205 1.02781 1.01529 0.89760 1.22403 0.96376 1.06212 0.96513 0.82878 1.20366 0.85539 0.83699 0.78002 1.90663 1.70257 1.23054 1.63641 1.48152 1.23264 1.11197 1.50725 1.21906 1.01246 0.80648 0.97141 1.21937 0.94007 1.04284 0.95375 1.21111 0.90204 0.88271 0.90170 1.86371 1.21933 1.69322 1.59261 1.22746 0.89264 1.02828 0.94387 1.60047 1.27848 1.30189 1.13699 1.21613 0.92126 1.03865 0.89284 1.21006 0.91734 0.81939 0.81801 1.90544 1.46725 1.50085 1.62431 1.42032 1.11034 1.59673 1.10503 1.19010 0.88780 1.42729 0.95399 0.92700 1.26131 1.00397 0.97310 0.97581 1.69805 1.24372 1.48655 1.14652 0.85355 0.78092 0.79308 0.78699 1.18189 1.20098 1.15325 1.22569 1.03015 0.97802 0.96318 1.21372 0.85951 1.00877 0.92162 0.90452 0.91364 0.91845 0.84706 0.89789 0.86769 0.90655 0.89135 0.87932 0.76385 0.89150 0.93047 0.83719 0.86753 0.90523 0.77471 0.91155 0.90580 0.90796 0.91079 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 71.98 0.73 -0.19 16 2 C -0.13 -1.77 5.92 -10.77 -0.06 -1.83 16 3 H 0.09 1.69 7.67 -2.39 -0.02 1.67 16 4 C -0.14 -1.46 9.88 30.62 0.30 -1.16 16 5 C -0.19 -2.57 4.84 -11.54 -0.06 -2.63 16 6 H 0.15 1.09 6.57 -2.39 -0.02 1.07 16 7 C 0.53 11.61 7.48 87.65 0.66 12.26 16 8 O -0.59 -18.48 15.67 -3.04 -0.05 -18.53 16 9 N -0.60 -11.19 2.97 -818.68 -2.43 -13.62 16 10 C 0.11 1.35 6.11 86.35 0.53 1.88 16 11 C -0.12 -1.34 5.11 30.67 0.16 -1.19 16 12 C 0.14 2.41 0.78 -10.77 -0.01 2.40 16 13 O -0.56 -11.46 11.70 -148.98 -1.74 -13.20 16 14 C 0.04 0.65 4.89 86.30 0.42 1.07 16 15 N -0.68 -17.65 5.52 -517.92 -2.86 -20.50 16 16 C 0.06 1.78 6.17 85.56 0.53 2.31 16 17 C 0.45 19.49 7.82 87.66 0.69 20.18 16 18 O -0.61 -33.03 15.78 -3.05 -0.05 -33.08 16 19 N -0.59 -27.25 5.09 -306.99 -1.56 -28.81 16 20 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.93 -56.16 13.96 21.66 0.30 -55.85 16 24 Si 0.97 38.22 27.74 68.60 1.90 40.12 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 28 C -0.16 -3.04 4.79 30.68 0.15 -2.89 16 29 C 0.12 2.57 6.19 86.37 0.53 3.10 16 30 H 0.08 0.33 7.90 -2.39 -0.02 0.31 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.13 0.65 8.05 -2.38 -0.02 0.63 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 0.71 5.52 -2.39 -0.01 0.70 16 36 H 0.08 1.04 7.81 -2.39 -0.02 1.02 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.39 8.46 8.49 -74.05 -0.63 7.83 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.34 9.69 6.44 -89.70 -0.58 9.11 16 43 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 46 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.08 1.64 6.50 -2.39 -0.02 1.63 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.07 1.56 7.81 -2.39 -0.02 1.55 16 50 H 0.07 1.78 7.01 -2.39 -0.02 1.77 16 Total: -1.00 -81.82 397.65 -1.42 -83.24 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: -0.82 Total: 45.64 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.89 Total: 14.59 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.55 Total: -118.79 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -1.84 Total: -64.80 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.12 kcal Total: -81.82 -1.42 -83.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674091868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.516 kcal (2) G-P(sol) polarization free energy of solvation -81.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds