Wall clock time and date at job start Tue Mar 31 2020 23:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00047 * 2 1 4 4 O 1.42901 * 109.47068 * 134.99879 * 3 2 1 5 5 C 1.42900 * 113.99840 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46958 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00173 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99900 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99899 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.52083 * 325.12136 * 9 8 6 11 11 C 1.53118 * 109.52509 * 85.31151 * 9 8 6 12 12 C 1.53045 * 109.27661 * 62.24981 * 11 9 8 13 13 N 1.46854 * 109.52021 * 59.17762 * 12 11 9 14 14 C 1.46896 * 110.99544 * 174.16066 * 13 12 11 15 15 C 1.50705 * 109.47220 * 284.43579 * 14 13 12 16 16 O 1.21289 * 120.00181 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99804 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99775 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00086 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99997 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99908 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99917 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47589 * 89.99517 * 22 20 18 24 24 H 1.48505 * 109.46878 * 209.99717 * 22 20 18 25 25 H 1.48499 * 109.47059 * 329.98830 * 22 20 18 26 26 C 1.46848 * 111.20067 * 298.25773 * 13 12 11 27 27 H 1.09000 * 109.45774 * 301.72980 * 26 13 12 28 28 C 1.52993 * 109.46181 * 181.75911 * 26 13 12 29 29 C 1.53041 * 109.51938 * 61.74179 * 26 13 12 30 30 H 1.08004 * 119.99499 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.00040 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00377 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47002 * 15.00648 * 3 2 1 34 34 H 1.08992 * 109.47573 * 255.01038 * 3 2 1 35 35 H 1.09003 * 109.47076 * 60.01000 * 5 4 3 36 36 H 1.08992 * 109.47669 * 300.00933 * 5 4 3 37 37 H 0.97004 * 119.99971 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.50476 * 182.18741 * 11 9 8 39 39 H 1.08999 * 109.50414 * 302.27553 * 11 9 8 40 40 H 1.08988 * 109.46238 * 179.19553 * 12 11 9 41 41 H 1.08998 * 109.46339 * 299.16681 * 12 11 9 42 42 H 1.08995 * 109.47611 * 44.43616 * 14 13 12 43 43 H 1.09006 * 109.47154 * 164.43457 * 14 13 12 44 44 H 0.96996 * 120.00534 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99714 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.47384 * 307.66599 * 28 26 13 47 47 H 1.09003 * 109.46945 * 67.66462 * 28 26 13 48 48 H 1.08997 * 109.47022 * 187.66399 * 28 26 13 49 49 H 1.09001 * 109.49653 * 180.87979 * 29 26 13 50 50 H 1.08993 * 109.50084 * 60.76625 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2564 2.0613 7 8 5.0904 1.2100 2.6668 8 7 5.8599 3.2597 2.3088 9 6 6.9163 3.0860 3.3089 10 1 6.5455 2.4681 4.1267 11 6 8.1271 2.4080 2.6618 12 6 8.6787 3.3088 1.5544 13 7 9.0676 4.6051 2.1245 14 6 9.7289 5.4458 1.1176 15 6 11.1350 4.9511 0.8952 16 8 11.5459 3.9928 1.5149 17 7 11.9362 5.5741 0.0085 18 6 13.2155 5.1244 -0.1934 19 1 13.5814 4.2711 0.3585 20 6 14.0414 5.7664 -1.1079 21 7 15.2678 5.3356 -1.3011 22 14 13.4089 7.2426 -2.0618 23 1 13.7007 8.4849 -1.3023 24 1 14.0809 7.3020 -3.3848 25 1 11.9424 7.1145 -2.2570 26 6 7.9115 5.2961 2.7098 27 1 7.1485 5.4393 1.9447 28 6 8.3520 6.6575 3.2514 29 6 7.3371 4.4545 3.8516 30 1 -0.5399 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2661 34 1 2.4754 1.4869 -0.9926 35 1 3.2690 3.2696 1.3193 36 1 4.3586 2.6397 0.0608 37 1 5.7837 4.0966 1.8242 38 1 8.8978 2.2437 3.4149 39 1 7.8242 1.4513 2.2363 40 1 9.5496 2.8354 1.1012 41 1 7.9120 3.4615 0.7948 42 1 9.1738 5.3957 0.1809 43 1 9.7579 6.4776 1.4680 44 1 11.6079 6.3407 -0.4868 45 1 15.8445 5.7840 -1.9393 46 1 9.2071 6.5254 3.9145 47 1 8.6328 7.3053 2.4210 48 1 7.5300 7.1116 3.8047 49 1 6.4696 4.9603 4.2756 50 1 8.0953 4.3225 4.6234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674121609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:19 Heat of formation + Delta-G solvation = -79.698683 kcal Electronic energy + Delta-G solvation = -29799.414461 eV Core-core repulsion = 25634.881776 eV Total energy + Delta-G solvation = -4164.532685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56530 -39.28211 -38.22319 -37.62425 -35.01565 -34.24850 -33.90877 -32.37174 -31.99464 -31.58580 -28.82460 -27.53609 -26.89229 -25.88245 -24.43596 -22.92004 -21.67717 -21.21603 -20.40124 -19.34340 -19.13228 -18.27129 -17.67540 -17.13567 -16.79222 -16.21109 -15.85833 -15.64816 -15.46409 -15.21995 -14.97626 -14.63576 -14.48362 -14.10570 -13.90881 -13.49334 -13.44248 -13.26116 -12.95693 -12.62285 -12.60785 -12.53056 -12.43511 -12.05626 -12.00165 -11.93517 -11.74793 -11.42334 -11.33844 -11.11435 -11.04121 -10.66444 -10.59399 -10.42174 -10.20636 -9.97876 -9.96549 -9.76207 -9.53693 -9.22859 -8.57481 -8.15873 -7.94624 -6.29539 -3.80682 1.68329 2.40246 2.60559 3.01306 3.05933 3.14311 3.66568 3.76297 3.83530 4.10652 4.36581 4.54033 4.59357 4.64382 4.65069 4.70504 4.76508 4.80223 4.88479 4.91907 5.03994 5.13516 5.20031 5.22862 5.28271 5.41886 5.42872 5.52381 5.59779 5.63514 5.68947 5.83275 5.84710 5.93044 5.95237 6.00268 6.12793 6.17143 6.18473 6.20435 6.36803 6.42502 6.62859 7.15554 7.26522 7.32072 7.60616 8.01496 8.16781 8.62712 8.97766 9.44674 9.87037 10.83815 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.002178 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.748430 B =12854.494275 C =13703.634161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.517 6.517 8 N -0.723 5.723 9 C 0.146 3.854 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.063 3.937 13 N -0.507 5.507 14 C 0.036 3.964 15 C 0.454 3.546 16 O -0.555 6.555 17 N -0.595 5.595 18 C -0.303 4.303 19 H 0.119 0.881 20 C 0.040 3.960 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.271 1.271 26 C 0.081 3.919 27 H 0.032 0.968 28 C -0.151 4.151 29 C -0.117 4.117 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.296 1.449 3.314 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.037 4.037 6 C 0.299 3.701 7 O -0.391 6.391 8 N -0.377 5.377 9 C 0.042 3.958 10 H 0.108 0.892 11 C -0.163 4.163 12 C -0.064 4.064 13 N -0.232 5.232 14 C -0.095 4.095 15 C 0.239 3.761 16 O -0.436 6.436 17 N -0.235 5.235 18 C -0.431 4.431 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.027 4.027 27 H 0.050 0.950 28 C -0.209 4.209 29 C -0.155 4.155 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.201 0.799 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.367 -0.229 4.574 27.748 hybrid contribution -0.938 2.094 -2.130 3.130 sum -28.305 1.864 2.444 28.471 Atomic orbital electron populations 1.23841 0.95484 1.02344 1.00034 1.22721 0.95620 0.98208 1.00205 1.21630 0.88704 0.96260 0.92415 1.88053 1.44307 1.34875 1.60444 1.22216 0.93288 0.89308 0.98888 1.20176 0.82236 0.84137 0.83592 1.90742 1.72382 1.26601 1.49408 1.46070 1.31817 1.17107 1.42748 1.21084 0.86809 0.97265 0.90666 0.89181 1.21944 0.96723 0.98215 0.99416 1.22065 0.99526 0.89754 0.95075 1.61488 1.25206 1.03020 1.33529 1.22009 0.95056 0.98238 0.94177 1.19690 0.86663 0.86366 0.83356 1.90559 1.75343 1.28440 1.49270 1.42220 1.13604 1.29676 1.38003 1.19421 0.86081 1.15246 1.22378 0.86317 1.25029 0.95453 0.98184 0.97575 1.69624 1.06431 1.40776 1.35494 0.86679 0.78757 0.83357 0.80595 1.19663 1.20267 1.19635 1.21599 0.91351 0.94127 0.95664 0.95049 1.21965 1.02169 0.95180 1.01569 1.21931 1.01002 0.94081 0.98461 0.87652 0.88432 0.86325 0.92569 0.91991 0.90323 0.90188 0.76829 0.89568 0.91180 0.89056 0.95995 0.93467 0.88731 0.79882 0.91684 0.90998 0.92330 0.92223 0.91001 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.31 29.01 0.42 -0.65 16 2 C -0.15 -1.12 9.89 -36.02 -0.36 -1.48 16 3 C 0.09 0.64 6.35 36.01 0.23 0.87 16 4 O -0.36 -3.89 9.86 -55.14 -0.54 -4.44 16 5 C 0.04 0.35 6.42 36.01 0.23 0.58 16 6 C 0.51 5.82 7.88 -10.98 -0.09 5.74 16 7 O -0.52 -8.30 16.16 -14.35 -0.23 -8.53 16 8 N -0.72 -6.70 4.34 -53.69 -0.23 -6.94 16 9 C 0.15 1.57 2.81 -67.81 -0.19 1.38 16 10 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 11 C -0.12 -1.65 5.76 -26.65 -0.15 -1.81 16 12 C 0.06 0.93 4.97 -3.83 -0.02 0.91 16 13 N -0.51 -7.40 4.05 -228.12 -0.92 -8.33 16 14 C 0.04 0.58 5.31 -4.98 -0.03 0.55 16 15 C 0.45 10.07 7.49 -10.98 -0.08 9.99 16 16 O -0.56 -14.63 14.74 5.55 0.08 -14.55 16 17 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 18 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 19 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 21 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 22 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 26 C 0.08 0.85 2.28 -67.72 -0.15 0.69 16 27 H 0.03 0.28 6.64 -51.93 -0.34 -0.06 16 28 C -0.15 -1.45 8.59 37.15 0.32 -1.14 16 29 C -0.12 -1.09 5.03 -26.65 -0.13 -1.23 16 30 H 0.11 0.51 8.06 -52.48 -0.42 0.08 16 31 H 0.10 0.46 7.90 -52.49 -0.41 0.04 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.74 7.01 -40.82 -0.29 2.45 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.69 6.69 -51.94 -0.35 1.34 16 41 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 42 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 43 H 0.09 1.30 5.42 -51.93 -0.28 1.02 16 44 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 47 H 0.06 0.55 6.38 -51.93 -0.33 0.22 16 48 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -35.88 401.43 -8.12 -44.00 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.06 Total: 10.50 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.26 Total: 6.76 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.44 Total: -54.28 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.69 Total: -27.52 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.88 -8.12 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds