Wall clock time and date at job start Tue Mar 31 2020 23:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00047 * 2 1 4 4 O 1.42901 * 109.47068 * 134.99879 * 3 2 1 5 5 C 1.42900 * 113.99840 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46958 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00173 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99900 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99899 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.52083 * 325.12136 * 9 8 6 11 11 C 1.53118 * 109.52509 * 85.31151 * 9 8 6 12 12 C 1.53045 * 109.27661 * 62.24981 * 11 9 8 13 13 N 1.46854 * 109.52021 * 59.17762 * 12 11 9 14 14 C 1.46896 * 110.99544 * 174.16066 * 13 12 11 15 15 C 1.50705 * 109.47220 * 284.43579 * 14 13 12 16 16 O 1.21289 * 120.00181 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99804 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99775 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00086 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99997 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99908 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99917 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47589 * 89.99517 * 22 20 18 24 24 H 1.48505 * 109.46878 * 209.99717 * 22 20 18 25 25 H 1.48499 * 109.47059 * 329.98830 * 22 20 18 26 26 C 1.46848 * 111.20067 * 298.25773 * 13 12 11 27 27 H 1.09000 * 109.45774 * 301.72980 * 26 13 12 28 28 C 1.52993 * 109.46181 * 181.75911 * 26 13 12 29 29 C 1.53041 * 109.51938 * 61.74179 * 26 13 12 30 30 H 1.08004 * 119.99499 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.00040 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00377 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47002 * 15.00648 * 3 2 1 34 34 H 1.08992 * 109.47573 * 255.01038 * 3 2 1 35 35 H 1.09003 * 109.47076 * 60.01000 * 5 4 3 36 36 H 1.08992 * 109.47669 * 300.00933 * 5 4 3 37 37 H 0.97004 * 119.99971 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.50476 * 182.18741 * 11 9 8 39 39 H 1.08999 * 109.50414 * 302.27553 * 11 9 8 40 40 H 1.08988 * 109.46238 * 179.19553 * 12 11 9 41 41 H 1.08998 * 109.46339 * 299.16681 * 12 11 9 42 42 H 1.08995 * 109.47611 * 44.43616 * 14 13 12 43 43 H 1.09006 * 109.47154 * 164.43457 * 14 13 12 44 44 H 0.96996 * 120.00534 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99714 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.47384 * 307.66599 * 28 26 13 47 47 H 1.09003 * 109.46945 * 67.66462 * 28 26 13 48 48 H 1.08997 * 109.47022 * 187.66399 * 28 26 13 49 49 H 1.09001 * 109.49653 * 180.87979 * 29 26 13 50 50 H 1.08993 * 109.50084 * 60.76625 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2564 2.0613 7 8 5.0904 1.2100 2.6668 8 7 5.8599 3.2597 2.3088 9 6 6.9163 3.0860 3.3089 10 1 6.5455 2.4681 4.1267 11 6 8.1271 2.4080 2.6618 12 6 8.6787 3.3088 1.5544 13 7 9.0676 4.6051 2.1245 14 6 9.7289 5.4458 1.1176 15 6 11.1350 4.9511 0.8952 16 8 11.5459 3.9928 1.5149 17 7 11.9362 5.5741 0.0085 18 6 13.2155 5.1244 -0.1934 19 1 13.5814 4.2711 0.3585 20 6 14.0414 5.7664 -1.1079 21 7 15.2678 5.3356 -1.3011 22 14 13.4089 7.2426 -2.0618 23 1 13.7007 8.4849 -1.3023 24 1 14.0809 7.3020 -3.3848 25 1 11.9424 7.1145 -2.2570 26 6 7.9115 5.2961 2.7098 27 1 7.1485 5.4393 1.9447 28 6 8.3520 6.6575 3.2514 29 6 7.3371 4.4545 3.8516 30 1 -0.5399 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2661 34 1 2.4754 1.4869 -0.9926 35 1 3.2690 3.2696 1.3193 36 1 4.3586 2.6397 0.0608 37 1 5.7837 4.0966 1.8242 38 1 8.8978 2.2437 3.4149 39 1 7.8242 1.4513 2.2363 40 1 9.5496 2.8354 1.1012 41 1 7.9120 3.4615 0.7948 42 1 9.1738 5.3957 0.1809 43 1 9.7579 6.4776 1.4680 44 1 11.6079 6.3407 -0.4868 45 1 15.8445 5.7840 -1.9393 46 1 9.2071 6.5254 3.9145 47 1 8.6328 7.3053 2.4210 48 1 7.5300 7.1116 3.8047 49 1 6.4696 4.9603 4.2756 50 1 8.0953 4.3225 4.6234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674121609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:18 Heat of formation + Delta-G solvation = -107.954308 kcal Electronic energy + Delta-G solvation = -29800.639717 eV Core-core repulsion = 25634.881776 eV Total energy + Delta-G solvation = -4165.757941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51809 -40.46839 -39.47723 -38.58698 -36.18766 -35.75079 -34.77220 -33.73054 -33.33916 -32.91267 -29.70303 -28.60553 -27.91782 -26.50888 -26.08830 -24.10212 -22.59507 -22.08618 -21.20636 -20.91717 -20.23462 -20.02149 -18.41232 -17.91891 -17.63456 -17.41020 -16.92643 -16.76398 -16.57979 -16.35662 -16.18823 -15.69180 -15.55572 -15.17751 -15.11051 -14.86141 -14.56989 -14.42505 -14.09847 -14.06102 -13.76354 -13.39771 -13.18953 -13.12471 -13.09002 -12.89410 -12.84416 -12.69319 -12.40168 -12.33818 -11.97610 -11.92096 -11.89234 -11.71713 -11.44613 -11.15585 -11.00482 -10.85327 -10.39207 -10.26692 -10.20914 -10.09683 -9.10381 -8.38866 -5.99407 1.18919 1.30324 1.37186 1.45582 1.57053 1.90431 2.02313 2.24917 2.61772 3.07937 3.16783 3.25963 3.65533 3.76072 3.80287 3.95915 4.05978 4.07078 4.16016 4.23898 4.24654 4.29475 4.32155 4.39823 4.43143 4.44715 4.46356 4.50044 4.60148 4.78092 4.81743 4.86802 4.97744 5.02867 5.03450 5.06276 5.17999 5.26561 5.46015 5.50874 5.56302 5.65163 5.69338 5.94199 6.07441 6.09252 6.31850 6.54508 6.63829 6.92747 7.23340 7.44603 8.04011 8.79191 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.002178 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.748430 B =12854.494275 C =13703.634161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.085 3.915 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.509 3.491 7 O -0.575 6.575 8 N -0.706 5.706 9 C 0.154 3.846 10 H 0.078 0.922 11 C -0.119 4.119 12 C 0.072 3.928 13 N -0.533 5.533 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.607 6.607 17 N -0.595 5.595 18 C -0.325 4.325 19 H 0.051 0.949 20 C -0.019 4.019 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.229 1.229 26 C 0.081 3.919 27 H 0.064 0.936 28 C -0.150 4.150 29 C -0.108 4.108 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.414 0.586 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.690 5.775 2.014 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.035 4.035 6 C 0.296 3.704 7 O -0.453 6.453 8 N -0.361 5.361 9 C 0.049 3.951 10 H 0.096 0.904 11 C -0.158 4.158 12 C -0.056 4.056 13 N -0.258 5.258 14 C -0.081 4.081 15 C 0.238 3.762 16 O -0.491 6.491 17 N -0.238 5.238 18 C -0.455 4.455 19 H 0.069 0.931 20 C -0.217 4.217 21 N -0.579 5.579 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.153 1.153 26 C -0.027 4.027 27 H 0.081 0.919 28 C -0.207 4.207 29 C -0.146 4.146 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.145 0.855 44 H 0.224 0.776 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -31.802 4.143 3.269 32.237 hybrid contribution 0.451 0.588 -1.621 1.783 sum -31.351 4.731 1.648 31.749 Atomic orbital electron populations 1.24057 0.94950 1.03543 0.97712 1.22800 0.96400 0.98134 1.02444 1.21786 0.88324 0.96591 0.92392 1.88007 1.45518 1.36578 1.61661 1.22367 0.92755 0.89550 0.98780 1.20908 0.82732 0.83347 0.83451 1.90723 1.73960 1.28930 1.51716 1.45882 1.30613 1.17470 1.42120 1.20866 0.85831 0.97928 0.90440 0.90381 1.21834 0.97537 0.97741 0.98683 1.21851 0.97967 0.90081 0.95659 1.61355 1.27886 1.03128 1.33480 1.21918 0.90502 0.99353 0.96299 1.21087 0.88927 0.84917 0.81247 1.90545 1.77040 1.30701 1.50774 1.42040 1.12099 1.30599 1.39040 1.18974 0.88869 1.14509 1.23130 0.93069 1.26148 0.95174 1.02140 0.98216 1.69821 1.08455 1.43065 1.36586 0.85339 0.80348 0.77644 0.77991 1.18035 1.20275 1.15251 1.21776 0.90385 0.94220 0.96287 0.91861 1.21975 1.02470 0.94602 1.01697 1.21910 1.01843 0.92985 0.97900 0.86915 0.86748 0.87963 0.90447 0.90810 0.86648 0.87719 0.74790 0.91727 0.92913 0.93987 0.93670 0.90344 0.85531 0.77578 0.91277 0.93305 0.91564 0.89248 0.87639 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.57 9.89 25.65 0.25 -2.31 16 3 C 0.08 1.08 6.35 71.24 0.45 1.53 16 4 O -0.40 -8.11 9.86 -129.94 -1.28 -9.40 16 5 C 0.04 0.60 6.42 71.24 0.46 1.05 16 6 C 0.51 10.72 7.88 87.66 0.69 11.41 16 7 O -0.57 -18.76 16.16 16.02 0.26 -18.50 16 8 N -0.71 -11.12 4.34 -442.16 -1.92 -13.04 16 9 C 0.15 3.14 2.81 45.07 0.13 3.27 16 10 H 0.08 1.84 7.58 -2.39 -0.02 1.82 16 11 C -0.12 -3.30 5.76 30.65 0.18 -3.12 16 12 C 0.07 2.12 4.97 86.33 0.43 2.55 16 13 N -0.53 -14.63 4.05 -875.64 -3.55 -18.18 16 14 C 0.05 1.44 5.31 85.56 0.45 1.90 16 15 C 0.45 20.15 7.49 87.66 0.66 20.80 16 16 O -0.61 -33.92 14.74 -3.06 -0.05 -33.97 16 17 N -0.60 -27.82 5.09 -306.98 -1.56 -29.39 16 18 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 19 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 20 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 21 N -0.94 -57.06 13.96 21.66 0.30 -56.76 16 22 Si 0.97 38.39 27.74 68.60 1.90 40.30 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 26 C 0.08 1.36 2.28 44.94 0.10 1.46 16 27 H 0.06 0.72 6.64 -2.39 -0.02 0.71 16 28 C -0.15 -2.20 8.59 71.98 0.62 -1.58 16 29 C -0.11 -1.72 5.03 30.65 0.15 -1.56 16 30 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.11 0.75 7.90 -2.92 -0.02 0.72 16 32 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.08 0.62 7.86 -2.38 -0.02 0.60 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.41 3.67 7.01 -92.70 -0.65 3.02 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.64 6.69 -2.39 -0.02 1.62 16 41 H 0.05 1.09 7.69 -2.39 -0.02 1.07 16 42 H 0.08 1.84 8.00 -2.39 -0.02 1.82 16 43 H 0.13 2.90 5.42 -2.38 -0.01 2.89 16 44 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.07 0.88 6.38 -2.39 -0.02 0.87 16 48 H 0.09 0.82 8.13 -2.39 -0.02 0.80 16 49 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -89.50 401.43 0.67 -88.82 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.29 Total: 34.31 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.86 Total: 15.80 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.73 Total: -117.37 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -1.07 Total: -61.87 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.90 Total: 40.30 kcal Total: -89.50 0.67 -88.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.132 kcal (2) G-P(sol) polarization free energy of solvation -89.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds