Wall clock time and date at job start Tue Mar 31 2020 23:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00099 * 2 1 4 4 O 1.42896 * 109.47556 * 134.99827 * 3 2 1 5 5 C 1.42897 * 114.00370 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47117 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00139 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00154 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00347 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.52616 * 34.86859 * 9 8 6 11 11 C 1.53123 * 109.52306 * 274.68267 * 9 8 6 12 12 C 1.53042 * 109.27593 * 297.75104 * 11 9 8 13 13 N 1.46850 * 109.52179 * 300.81698 * 12 11 9 14 14 C 1.46900 * 111.00006 * 185.84140 * 13 12 11 15 15 C 1.50698 * 109.46882 * 300.41179 * 14 13 12 16 16 O 1.21287 * 120.00403 * 354.33582 * 15 14 13 17 17 N 1.34779 * 119.99401 * 174.33062 * 15 14 13 18 18 C 1.37106 * 119.99489 * 180.02562 * 17 15 14 19 19 H 1.07993 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99796 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00357 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46790 * 270.00091 * 22 20 18 24 24 H 1.48501 * 109.47441 * 149.99826 * 22 20 18 25 25 H 1.48499 * 109.47290 * 29.99685 * 22 20 18 26 26 C 1.46848 * 111.19814 * 61.74180 * 13 12 11 27 27 H 1.09004 * 109.45742 * 58.26448 * 26 13 12 28 28 C 1.53001 * 109.46488 * 178.24012 * 26 13 12 29 29 C 1.53037 * 109.52565 * 298.25898 * 26 13 12 30 30 H 1.07997 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99492 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00114 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.47123 * 14.99443 * 3 2 1 34 34 H 1.09009 * 109.47084 * 255.00192 * 3 2 1 35 35 H 1.09002 * 109.46861 * 60.00003 * 5 4 3 36 36 H 1.09003 * 109.47216 * 300.00523 * 5 4 3 37 37 H 0.97003 * 119.99561 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.50322 * 57.68665 * 11 9 8 39 39 H 1.08994 * 109.50527 * 177.76756 * 11 9 8 40 40 H 1.09002 * 109.45919 * 180.80787 * 12 11 9 41 41 H 1.08993 * 109.46364 * 60.83319 * 12 11 9 42 42 H 1.09003 * 109.46822 * 180.41577 * 14 13 12 43 43 H 1.09000 * 109.46799 * 60.41428 * 14 13 12 44 44 H 0.96998 * 120.00775 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00593 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46621 * 53.15356 * 28 26 13 47 47 H 1.08998 * 109.47016 * 173.15455 * 28 26 13 48 48 H 1.08999 * 109.46886 * 293.16075 * 28 26 13 49 49 H 1.08997 * 109.50564 * 179.11801 * 29 26 13 50 50 H 1.08997 * 109.50664 * 299.20087 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9947 2.2564 2.0612 7 8 5.0903 1.2100 2.6667 8 7 5.8599 3.2597 2.3087 9 6 6.9162 3.0861 3.3088 10 1 7.2644 2.0533 3.2953 11 6 6.3667 3.4240 4.6975 12 6 5.9354 4.8921 4.7266 13 7 7.0870 5.7482 4.4146 14 6 6.7444 7.1684 4.5688 15 6 5.6087 7.5147 3.6407 16 8 5.1999 6.6918 2.8490 17 7 5.0473 8.7390 3.6905 18 6 4.0138 9.0539 2.8464 19 1 3.6493 8.3209 2.1420 20 6 3.4353 10.3162 2.8973 21 7 2.4450 10.6183 2.0880 22 14 4.0662 11.5844 4.1152 23 1 3.3160 11.4615 5.3909 24 1 3.8727 12.9465 3.5564 25 1 5.5113 11.3531 4.3667 26 6 7.6025 5.4745 3.0671 27 1 6.8101 5.6344 2.3358 28 6 8.7707 6.4159 2.7671 29 6 8.0835 4.0238 2.9884 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9927 35 1 3.2689 3.2696 1.3191 36 1 4.3587 2.6396 0.0607 37 1 5.7832 4.0968 1.8246 38 1 5.5082 2.7882 4.9137 39 1 7.1412 3.2567 5.4459 40 1 5.5569 5.1398 5.7183 41 1 5.1510 5.0549 3.9875 42 1 7.6128 7.7802 4.3245 43 1 6.4432 7.3596 5.5987 44 1 5.3744 9.3972 4.3234 45 1 2.0409 11.4994 2.1238 46 1 9.5092 6.3442 3.5655 47 1 9.2307 6.1338 1.8201 48 1 8.4042 7.4404 2.7022 49 1 8.4516 3.8165 1.9836 50 1 8.8857 3.8668 3.7094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674121610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:22 Heat of formation + Delta-G solvation = -83.116970 kcal Electronic energy + Delta-G solvation = -30788.730745 eV Core-core repulsion = 26624.049832 eV Total energy + Delta-G solvation = -4164.680913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42346 -39.29726 -38.02236 -37.28311 -34.78304 -33.98188 -33.92974 -32.19439 -31.88740 -31.59395 -28.55585 -27.34576 -26.70879 -25.57662 -24.42422 -22.71541 -21.47846 -20.95964 -20.14001 -19.56784 -19.02670 -18.12052 -17.32196 -16.83127 -16.41497 -16.09316 -15.61793 -15.57083 -15.31552 -15.01268 -14.82235 -14.80859 -14.29652 -14.05221 -13.64083 -13.52577 -13.26863 -13.00728 -12.86325 -12.40592 -12.32382 -12.26378 -12.24072 -12.18110 -11.82503 -11.73556 -11.46525 -11.31970 -11.16616 -11.11407 -10.68724 -10.57279 -10.48687 -10.11922 -10.10918 -10.02801 -9.65986 -9.59784 -9.48469 -9.36794 -8.88844 -8.29035 -7.53161 -6.43919 -3.95199 1.93301 2.73500 2.94129 2.96028 2.98980 3.07865 3.56858 3.99744 4.00809 4.18671 4.58655 4.71615 4.83438 4.91373 4.92152 4.96092 5.07315 5.09200 5.15067 5.19059 5.25620 5.36322 5.37039 5.51024 5.58779 5.63886 5.65062 5.73872 5.78242 5.85813 5.87087 5.89751 5.97338 6.06407 6.16219 6.27033 6.29592 6.35659 6.42932 6.49192 6.62821 6.68844 6.95045 7.25854 7.39664 7.44863 7.65700 8.01642 8.35740 8.45057 8.81348 9.29690 9.67219 10.68698 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.003354 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.030090 B = 8345.441073 C =10865.945549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.361 6.361 5 C 0.041 3.959 6 C 0.518 3.482 7 O -0.530 6.530 8 N -0.717 5.717 9 C 0.149 3.851 10 H 0.085 0.915 11 C -0.123 4.123 12 C 0.038 3.962 13 N -0.507 5.507 14 C 0.034 3.966 15 C 0.418 3.582 16 O -0.580 6.580 17 N -0.583 5.583 18 C -0.308 4.308 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.878 5.878 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.268 1.268 26 C 0.061 3.939 27 H 0.082 0.918 28 C -0.145 4.145 29 C -0.116 4.116 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -11.850 -0.209 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.008 3.992 4 O -0.279 6.279 5 C -0.038 4.038 6 C 0.303 3.697 7 O -0.406 6.406 8 N -0.371 5.371 9 C 0.045 3.955 10 H 0.103 0.897 11 C -0.162 4.162 12 C -0.090 4.090 13 N -0.231 5.231 14 C -0.098 4.098 15 C 0.204 3.796 16 O -0.466 6.466 17 N -0.220 5.220 18 C -0.437 4.437 19 H 0.136 0.864 20 C -0.160 4.160 21 N -0.517 5.517 22 Si 0.705 3.295 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.048 4.048 27 H 0.100 0.900 28 C -0.203 4.203 29 C -0.154 4.154 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.204 0.796 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.230 -13.274 0.069 15.115 hybrid contribution -0.475 2.220 -0.025 2.271 sum 6.755 -11.053 0.044 12.954 Atomic orbital electron populations 1.23853 0.95539 1.02336 1.00080 1.22709 0.95601 0.98124 1.00194 1.21629 0.88927 0.96227 0.92383 1.87999 1.44306 1.35097 1.60513 1.22235 0.93497 0.89338 0.98777 1.20144 0.82271 0.83853 0.83417 1.90692 1.72178 1.27316 1.50431 1.46061 1.31649 1.17453 1.41972 1.20950 0.86952 0.99855 0.87769 0.89700 1.21938 1.01484 0.96375 0.96428 1.22288 0.93435 0.91559 1.01705 1.62459 1.31639 1.02629 1.26340 1.22171 0.97256 0.90846 0.99548 1.21024 0.87198 0.83271 0.88107 1.90367 1.65868 1.48283 1.42046 1.42425 1.32350 1.12485 1.34786 1.19418 1.08707 0.99878 1.15670 0.86355 1.25073 0.96222 0.97365 0.97384 1.69615 1.23141 1.22136 1.36796 0.86681 0.79117 0.82005 0.81677 1.19546 1.20110 1.19387 1.21854 0.97535 0.93827 0.91543 0.89992 1.21876 0.97890 0.99469 1.01068 1.21919 0.97209 0.94217 1.02078 0.88277 0.87801 0.86548 0.92305 0.92105 0.89631 0.90292 0.75495 0.91374 0.90830 0.91810 0.90490 0.88786 0.89492 0.79599 0.91499 0.92219 0.92546 0.92537 0.91261 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 14.31 29.01 0.42 -1.18 16 2 C -0.15 -1.53 9.89 -36.03 -0.36 -1.89 16 3 C 0.08 0.94 6.35 36.00 0.23 1.17 16 4 O -0.36 -5.24 9.86 -55.14 -0.54 -5.79 16 5 C 0.04 0.54 6.42 36.00 0.23 0.77 16 6 C 0.52 7.96 7.88 -10.99 -0.09 7.88 16 7 O -0.53 -9.98 16.16 -14.36 -0.23 -10.21 16 8 N -0.72 -9.93 4.34 -53.69 -0.23 -10.16 16 9 C 0.15 1.95 2.81 -67.81 -0.19 1.76 16 10 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 11 C -0.12 -1.69 5.76 -26.65 -0.15 -1.84 16 12 C 0.04 0.58 4.85 -3.83 -0.02 0.56 16 13 N -0.51 -7.34 4.69 -228.12 -1.07 -8.41 16 14 C 0.03 0.52 5.45 -4.98 -0.03 0.49 16 15 C 0.42 8.40 7.18 -10.99 -0.08 8.32 16 16 O -0.58 -12.90 11.22 5.55 0.06 -12.84 16 17 N -0.58 -12.83 5.09 -10.97 -0.06 -12.88 16 18 C -0.31 -8.14 10.16 -14.93 -0.15 -8.30 16 19 H 0.12 3.57 7.39 -52.49 -0.39 3.18 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -24.58 13.96 55.50 0.77 -23.81 16 22 Si 0.88 18.58 27.74 -169.99 -4.71 13.86 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 26 C 0.06 0.83 1.90 -67.72 -0.13 0.70 16 27 H 0.08 1.35 4.18 -51.93 -0.22 1.13 16 28 C -0.15 -1.78 8.52 37.16 0.32 -1.46 16 29 C -0.12 -1.35 5.03 -26.65 -0.13 -1.48 16 30 H 0.10 0.81 7.90 -52.49 -0.41 0.40 16 31 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.06 0.61 7.86 -51.92 -0.41 0.21 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.41 5.71 7.01 -40.82 -0.29 5.42 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 41 H 0.08 1.42 5.22 -51.93 -0.27 1.14 16 42 H 0.09 1.30 6.10 -51.93 -0.32 0.98 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.76 6.65 -51.93 -0.35 0.41 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -31.62 395.41 -8.22 -39.84 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -7.94 Total: 17.88 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.23 Total: 6.55 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.59 Total: -55.26 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.71 Total: -28.84 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.62 -8.22 -39.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.275 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds