Wall clock time and date at job start Tue Mar 31 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00099 * 2 1 4 4 O 1.42896 * 109.47556 * 134.99827 * 3 2 1 5 5 C 1.42897 * 114.00370 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47117 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00139 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00154 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00347 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.52616 * 34.86859 * 9 8 6 11 11 C 1.53123 * 109.52306 * 274.68267 * 9 8 6 12 12 C 1.53042 * 109.27593 * 297.75104 * 11 9 8 13 13 N 1.46850 * 109.52179 * 300.81698 * 12 11 9 14 14 C 1.46900 * 111.00006 * 185.84140 * 13 12 11 15 15 C 1.50698 * 109.46882 * 300.41179 * 14 13 12 16 16 O 1.21287 * 120.00403 * 354.33582 * 15 14 13 17 17 N 1.34779 * 119.99401 * 174.33062 * 15 14 13 18 18 C 1.37106 * 119.99489 * 180.02562 * 17 15 14 19 19 H 1.07993 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38945 * 119.99796 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00357 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46790 * 270.00091 * 22 20 18 24 24 H 1.48501 * 109.47441 * 149.99826 * 22 20 18 25 25 H 1.48499 * 109.47290 * 29.99685 * 22 20 18 26 26 C 1.46848 * 111.19814 * 61.74180 * 13 12 11 27 27 H 1.09004 * 109.45742 * 58.26448 * 26 13 12 28 28 C 1.53001 * 109.46488 * 178.24012 * 26 13 12 29 29 C 1.53037 * 109.52565 * 298.25898 * 26 13 12 30 30 H 1.07997 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99492 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00114 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.47123 * 14.99443 * 3 2 1 34 34 H 1.09009 * 109.47084 * 255.00192 * 3 2 1 35 35 H 1.09002 * 109.46861 * 60.00003 * 5 4 3 36 36 H 1.09003 * 109.47216 * 300.00523 * 5 4 3 37 37 H 0.97003 * 119.99561 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.50322 * 57.68665 * 11 9 8 39 39 H 1.08994 * 109.50527 * 177.76756 * 11 9 8 40 40 H 1.09002 * 109.45919 * 180.80787 * 12 11 9 41 41 H 1.08993 * 109.46364 * 60.83319 * 12 11 9 42 42 H 1.09003 * 109.46822 * 180.41577 * 14 13 12 43 43 H 1.09000 * 109.46799 * 60.41428 * 14 13 12 44 44 H 0.96998 * 120.00775 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00593 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46621 * 53.15356 * 28 26 13 47 47 H 1.08998 * 109.47016 * 173.15455 * 28 26 13 48 48 H 1.08999 * 109.46886 * 293.16075 * 28 26 13 49 49 H 1.08997 * 109.50564 * 179.11801 * 29 26 13 50 50 H 1.08997 * 109.50664 * 299.20087 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9947 2.2564 2.0612 7 8 5.0903 1.2100 2.6667 8 7 5.8599 3.2597 2.3087 9 6 6.9162 3.0861 3.3088 10 1 7.2644 2.0533 3.2953 11 6 6.3667 3.4240 4.6975 12 6 5.9354 4.8921 4.7266 13 7 7.0870 5.7482 4.4146 14 6 6.7444 7.1684 4.5688 15 6 5.6087 7.5147 3.6407 16 8 5.1999 6.6918 2.8490 17 7 5.0473 8.7390 3.6905 18 6 4.0138 9.0539 2.8464 19 1 3.6493 8.3209 2.1420 20 6 3.4353 10.3162 2.8973 21 7 2.4450 10.6183 2.0880 22 14 4.0662 11.5844 4.1152 23 1 3.3160 11.4615 5.3909 24 1 3.8727 12.9465 3.5564 25 1 5.5113 11.3531 4.3667 26 6 7.6025 5.4745 3.0671 27 1 6.8101 5.6344 2.3358 28 6 8.7707 6.4159 2.7671 29 6 8.0835 4.0238 2.9884 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9927 35 1 3.2689 3.2696 1.3191 36 1 4.3587 2.6396 0.0607 37 1 5.7832 4.0968 1.8246 38 1 5.5082 2.7882 4.9137 39 1 7.1412 3.2567 5.4459 40 1 5.5569 5.1398 5.7183 41 1 5.1510 5.0549 3.9875 42 1 7.6128 7.7802 4.3245 43 1 6.4432 7.3596 5.5987 44 1 5.3744 9.3972 4.3234 45 1 2.0409 11.4994 2.1238 46 1 9.5092 6.3442 3.5655 47 1 9.2307 6.1338 1.8201 48 1 8.4042 7.4404 2.7022 49 1 8.4516 3.8165 1.9836 50 1 8.8857 3.8668 3.7094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674121610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:21 Heat of formation + Delta-G solvation = -106.522538 kcal Electronic energy + Delta-G solvation = -30789.745687 eV Core-core repulsion = 26624.049832 eV Total energy + Delta-G solvation = -4165.695855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66871 -40.65182 -39.27234 -38.53410 -36.22337 -35.55590 -34.81364 -33.74854 -33.30128 -32.85374 -29.71211 -28.57119 -27.86090 -26.54378 -26.05134 -23.94433 -22.63287 -22.13062 -21.26280 -20.95708 -20.47677 -19.67638 -18.42600 -17.96440 -17.59948 -17.44953 -16.90068 -16.75611 -16.61012 -16.36100 -16.07218 -15.98023 -15.56350 -15.30802 -15.14361 -14.70552 -14.57394 -14.42154 -14.14038 -13.92751 -13.55007 -13.36905 -13.22547 -13.17825 -13.05130 -12.88480 -12.71490 -12.56872 -12.43505 -12.33666 -11.99919 -11.94617 -11.82817 -11.60777 -11.32478 -11.12573 -11.07474 -10.93442 -10.88895 -10.32289 -10.18742 -10.07561 -8.92660 -8.41073 -5.99757 1.14682 1.29930 1.34122 1.42862 1.50867 1.90957 1.95263 2.22251 2.96249 3.01117 3.04100 3.17123 3.64184 3.80633 3.84578 4.01440 4.03762 4.08116 4.16500 4.18457 4.19942 4.27051 4.37137 4.43938 4.47310 4.55942 4.61044 4.63606 4.69361 4.80418 4.83699 4.93524 4.97142 4.98756 5.08612 5.13249 5.26373 5.30497 5.49489 5.53849 5.55598 5.60645 5.66089 5.95147 5.98914 6.07479 6.20033 6.47335 6.59353 6.90282 7.15236 7.42152 7.96497 8.75968 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.003354 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.030090 B = 8345.441073 C =10865.945549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.173 4.173 3 C 0.079 3.921 4 O -0.388 6.388 5 C 0.042 3.958 6 C 0.514 3.486 7 O -0.569 6.569 8 N -0.709 5.709 9 C 0.145 3.855 10 H 0.084 0.916 11 C -0.115 4.115 12 C 0.041 3.959 13 N -0.493 5.493 14 C 0.040 3.960 15 C 0.422 3.578 16 O -0.602 6.602 17 N -0.592 5.592 18 C -0.320 4.320 19 H 0.061 0.939 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.957 3.043 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.230 1.230 26 C 0.057 3.943 27 H 0.051 0.949 28 C -0.141 4.141 29 C -0.104 4.104 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.408 0.592 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.387 0.613 45 H 0.277 0.723 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.042 0.958 49 H 0.083 0.917 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.820 -11.273 1.399 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.191 4.191 3 C 0.004 3.996 4 O -0.307 6.307 5 C -0.037 4.037 6 C 0.301 3.699 7 O -0.448 6.448 8 N -0.362 5.362 9 C 0.041 3.959 10 H 0.102 0.898 11 C -0.154 4.154 12 C -0.087 4.087 13 N -0.216 5.216 14 C -0.092 4.092 15 C 0.210 3.790 16 O -0.487 6.487 17 N -0.233 5.233 18 C -0.449 4.449 19 H 0.079 0.921 20 C -0.213 4.213 21 N -0.575 5.575 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.154 1.154 26 C -0.052 4.052 27 H 0.069 0.931 28 C -0.198 4.198 29 C -0.142 4.142 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.245 0.755 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.222 0.778 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.902 -12.712 1.674 16.200 hybrid contribution -1.333 1.869 -0.602 2.373 sum 8.569 -10.843 1.073 13.862 Atomic orbital electron populations 1.24080 0.95059 1.03494 0.97752 1.22753 0.96234 0.97730 1.02374 1.21829 0.88389 0.96926 0.92502 1.87964 1.45292 1.35660 1.61792 1.22280 0.92989 0.89017 0.99418 1.20555 0.82595 0.83435 0.83347 1.90662 1.73348 1.28801 1.52021 1.46099 1.31471 1.16934 1.41743 1.21083 0.87267 1.00325 0.87247 0.89830 1.21855 1.01349 0.94763 0.97415 1.22194 0.92952 0.92861 1.00700 1.62555 1.30397 1.01916 1.26723 1.22346 0.95876 0.91634 0.99322 1.22208 0.87172 0.82083 0.87547 1.90395 1.66506 1.48882 1.42938 1.42297 1.32108 1.13750 1.35153 1.18998 1.10609 0.99280 1.16042 0.92118 1.26034 0.96096 0.99605 0.99577 1.69791 1.25221 1.23036 1.39465 0.85465 0.80601 0.77732 0.78400 1.18667 1.20397 1.15373 1.21908 0.97373 0.95742 0.90134 0.93073 1.21845 0.97403 0.98013 1.02572 1.21873 0.96689 0.92069 1.03606 0.87689 0.86035 0.86739 0.92046 0.90521 0.89710 0.87607 0.75518 0.93285 0.88764 0.91558 0.93951 0.86072 0.87076 0.77827 0.91362 0.90358 0.91172 0.93913 0.89807 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 14.31 67.78 0.97 -1.85 16 2 C -0.17 -3.58 9.89 25.64 0.25 -3.33 16 3 C 0.08 1.79 6.35 71.23 0.45 2.24 16 4 O -0.39 -11.62 9.86 -129.94 -1.28 -12.90 16 5 C 0.04 1.15 6.42 71.23 0.46 1.61 16 6 C 0.51 16.27 7.88 87.66 0.69 16.96 16 7 O -0.57 -22.08 16.16 16.00 0.26 -21.82 16 8 N -0.71 -19.86 4.34 -442.16 -1.92 -21.78 16 9 C 0.14 3.64 2.81 45.07 0.13 3.77 16 10 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 11 C -0.12 -3.04 5.76 30.65 0.18 -2.86 16 12 C 0.04 1.22 4.85 86.33 0.42 1.64 16 13 N -0.49 -13.00 4.69 -875.63 -4.11 -17.11 16 14 C 0.04 1.11 5.45 85.56 0.47 1.57 16 15 C 0.42 16.72 7.18 87.66 0.63 17.35 16 16 O -0.60 -27.44 11.22 -3.05 -0.03 -27.47 16 17 N -0.59 -25.71 5.09 -306.99 -1.56 -27.27 16 18 C -0.32 -17.52 10.16 84.04 0.85 -16.66 16 19 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 20 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 21 N -0.93 -54.48 13.96 21.66 0.30 -54.17 16 22 Si 0.96 37.55 27.74 68.60 1.90 39.45 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 26 C 0.06 1.43 1.90 44.94 0.09 1.51 16 27 H 0.05 1.65 4.18 -2.38 -0.01 1.64 16 28 C -0.14 -2.97 8.52 71.98 0.61 -2.35 16 29 C -0.10 -2.14 5.03 30.65 0.15 -1.99 16 30 H 0.10 1.63 7.90 -2.91 -0.02 1.61 16 31 H 0.12 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.11 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.06 1.31 7.86 -2.38 -0.02 1.29 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.41 11.67 7.01 -92.71 -0.65 11.02 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 41 H 0.04 1.58 5.22 -2.39 -0.01 1.57 16 42 H 0.12 2.82 6.10 -2.39 -0.01 2.80 16 43 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.39 14.19 5.76 -92.71 -0.53 13.65 16 45 H 0.28 14.90 8.31 -92.71 -0.77 14.12 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.04 1.02 6.65 -2.39 -0.02 1.00 16 49 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.72 395.41 0.08 -73.64 By element: Atomic # 1 Polarization: 52.42 SS G_CDS: -0.29 Total: 52.14 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.81 Total: 17.31 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -7.29 Total: -120.34 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -1.06 Total: -62.20 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -73.72 0.08 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.882 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds