Wall clock time and date at job start Tue Mar 31 2020 23:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99715 * 2 1 4 4 O 1.42899 * 109.47296 * 134.99847 * 3 2 1 5 5 C 1.42894 * 114.00306 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47340 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99891 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.57878 * 324.84537 * 9 8 6 11 11 C 1.53118 * 109.51976 * 85.00692 * 9 8 6 12 12 C 1.53043 * 109.31033 * 177.57930 * 11 9 8 13 13 N 1.46849 * 109.51948 * 300.79513 * 12 11 9 14 14 C 1.46897 * 111.00117 * 185.83688 * 13 12 11 15 15 C 1.50700 * 109.46718 * 75.50147 * 14 13 12 16 16 O 1.21290 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99887 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00016 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47198 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47467 * 119.99550 * 22 20 18 25 25 H 1.48502 * 109.47026 * 239.99693 * 22 20 18 26 26 C 1.46849 * 111.19448 * 61.74542 * 13 12 11 27 27 H 1.08998 * 109.46686 * 58.27101 * 26 13 12 28 28 C 1.53001 * 109.46014 * 178.24066 * 26 13 12 29 29 C 1.53039 * 109.52499 * 298.25137 * 26 13 12 30 30 H 1.07998 * 119.99967 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99971 * 0.02562 * 1 2 3 32 32 H 1.07995 * 119.99971 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47485 * 14.99393 * 3 2 1 34 34 H 1.09002 * 109.46849 * 254.99349 * 3 2 1 35 35 H 1.09005 * 109.46720 * 60.00471 * 5 4 3 36 36 H 1.08997 * 109.47646 * 300.00597 * 5 4 3 37 37 H 0.96996 * 119.99791 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.50712 * 57.61471 * 11 9 8 39 39 H 1.09004 * 109.50024 * 297.53426 * 11 9 8 40 40 H 1.08999 * 109.46092 * 60.81196 * 12 11 9 41 41 H 1.09001 * 109.46127 * 180.79415 * 12 11 9 42 42 H 1.08998 * 109.47279 * 195.50548 * 14 13 12 43 43 H 1.08998 * 109.47112 * 315.50922 * 14 13 12 44 44 H 0.96996 * 119.99798 * 0.02562 * 17 15 14 45 45 H 0.97000 * 120.00413 * 180.02562 * 21 20 18 46 46 H 1.08994 * 109.47375 * 51.88931 * 28 26 13 47 47 H 1.09004 * 109.47100 * 171.89149 * 28 26 13 48 48 H 1.09005 * 109.47275 * 291.88728 * 28 26 13 49 49 H 1.09000 * 109.50343 * 179.12375 * 29 26 13 50 50 H 1.08995 * 109.50528 * 299.20309 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2570 2.0621 7 8 5.0890 1.2109 2.6683 8 7 5.8595 3.2601 2.3091 9 6 6.9151 3.0868 3.3101 10 1 6.5428 2.4743 4.1312 11 6 8.1229 2.4004 2.6664 12 6 9.2448 2.2763 3.6999 13 7 9.6185 3.6124 4.1812 14 6 10.7853 3.5441 5.0711 15 6 12.0303 3.3242 4.2508 16 8 11.9532 3.2338 3.0438 17 7 13.2296 3.2290 4.8585 18 6 14.3623 3.0295 4.1123 19 1 14.2936 2.9490 3.0374 20 6 15.5985 2.9308 4.7387 21 7 15.6822 3.0292 6.0465 22 14 17.1419 2.6596 3.7219 23 1 16.7802 2.5846 2.2836 24 1 18.0819 3.7887 3.9381 25 1 17.7904 1.3894 4.1357 26 6 8.4878 4.2727 4.8460 27 1 8.1471 3.6583 5.6793 28 6 8.9320 5.6401 5.3693 29 6 7.3434 4.4565 3.8467 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9926 35 1 3.2687 3.2696 1.3193 36 1 4.3586 2.6398 0.0608 37 1 5.7836 4.0966 1.8241 38 1 8.4710 2.9939 1.8209 39 1 7.8355 1.4076 2.3203 40 1 8.9006 1.6712 4.5386 41 1 10.1111 1.8006 3.2402 42 1 10.8753 4.4787 5.6247 43 1 10.6607 2.7177 5.7708 44 1 13.2913 3.3017 5.8238 45 1 16.5453 2.9607 6.4838 46 1 9.4054 6.2012 4.5636 47 1 8.0637 6.1895 5.7332 48 1 9.6433 5.5039 6.1839 49 1 6.4986 4.9325 4.3444 50 1 7.6789 5.0828 3.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674121611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:25 Heat of formation + Delta-G solvation = -89.674430 kcal Electronic energy + Delta-G solvation = -29219.993062 eV Core-core repulsion = 25055.027796 eV Total energy + Delta-G solvation = -4164.965266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32575 -39.23240 -38.14932 -37.50112 -35.14215 -34.25137 -33.84160 -32.28378 -31.91466 -31.11718 -28.87320 -27.28487 -26.68840 -25.85627 -24.38462 -22.87499 -21.74685 -20.68373 -20.38255 -19.68591 -19.07763 -17.80473 -17.59488 -17.20789 -16.76907 -16.07912 -15.96061 -15.54456 -15.31929 -15.25079 -14.73829 -14.47476 -14.37112 -13.97403 -13.84950 -13.61380 -13.47668 -13.26677 -13.14649 -12.62136 -12.55106 -12.30164 -12.09034 -11.93656 -11.72505 -11.66203 -11.47152 -11.42164 -11.09447 -10.99058 -10.84301 -10.65776 -10.43785 -10.38431 -10.31438 -10.18221 -9.90676 -9.75451 -9.45708 -9.16716 -8.42659 -7.91548 -7.80284 -6.37351 -3.77791 1.67883 2.41201 2.59844 3.19009 3.29179 3.36379 3.66534 3.93589 3.98780 4.26470 4.37198 4.55719 4.62320 4.66219 4.70353 4.76218 4.87758 4.90369 4.92231 5.03628 5.11256 5.23528 5.29707 5.38660 5.41581 5.43951 5.50315 5.56657 5.68037 5.78292 5.79550 5.90059 6.00165 6.07800 6.12476 6.13246 6.16800 6.21120 6.26779 6.35911 6.43676 6.47184 6.63353 7.26967 7.34178 7.44949 7.59456 8.03370 8.11841 8.67648 9.23528 9.60593 10.13069 10.80683 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.001794 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.468462 B =15607.555248 C =16480.910452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.517 6.517 8 N -0.723 5.723 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.121 4.121 12 C 0.064 3.936 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.446 3.554 16 O -0.575 6.575 17 N -0.568 5.568 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.084 3.916 27 H 0.039 0.961 28 C -0.149 4.149 29 C -0.114 4.114 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.969 3.359 -6.337 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.391 6.391 8 N -0.376 5.376 9 C 0.042 3.958 10 H 0.103 0.897 11 C -0.160 4.160 12 C -0.065 4.065 13 N -0.234 5.234 14 C -0.092 4.092 15 C 0.232 3.768 16 O -0.459 6.459 17 N -0.206 5.206 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.755 3.245 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.025 4.025 27 H 0.057 0.943 28 C -0.207 4.207 29 C -0.153 4.153 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.639 2.621 -6.890 27.640 hybrid contribution 0.617 0.072 0.471 0.780 sum -26.022 2.693 -6.419 26.937 Atomic orbital electron populations 1.23844 0.95486 1.02347 1.00015 1.22724 0.95625 0.98223 1.00219 1.21625 0.88712 0.96255 0.92388 1.88055 1.44312 1.34923 1.60456 1.22214 0.93262 0.89285 0.98856 1.20206 0.82269 0.84151 0.83652 1.90753 1.72318 1.26655 1.49390 1.45968 1.31823 1.17230 1.42595 1.21125 0.86734 0.97353 0.90614 0.89729 1.21929 0.93744 1.01034 0.99330 1.22052 0.98631 0.89130 0.96661 1.61537 1.03663 1.20370 1.37847 1.21976 0.90940 1.02016 0.94306 1.19792 0.84162 0.84163 0.88731 1.90507 1.86143 1.54970 1.14255 1.41878 1.05297 1.63729 1.09658 1.19736 0.83800 1.45826 0.93205 0.87941 1.25233 0.99299 0.97606 0.95869 1.69619 1.26134 1.50761 1.08002 0.85823 0.81010 0.77744 0.79896 1.19277 1.20819 1.20844 1.21524 0.90762 0.95901 0.94301 0.94290 1.21943 1.01234 0.95918 1.01580 1.21893 0.97445 0.96043 0.99891 0.87660 0.88426 0.86335 0.92559 0.92003 0.90279 0.90086 0.76630 0.90549 0.91341 0.95565 0.88796 0.88798 0.93361 0.77597 0.92026 0.91209 0.92316 0.92092 0.91162 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.31 29.01 0.42 -0.62 16 2 C -0.15 -1.10 9.89 -36.03 -0.36 -1.46 16 3 C 0.09 0.61 6.35 36.00 0.23 0.84 16 4 O -0.36 -3.85 9.86 -55.14 -0.54 -4.39 16 5 C 0.04 0.35 6.42 36.00 0.23 0.58 16 6 C 0.51 5.84 7.87 -10.98 -0.09 5.76 16 7 O -0.52 -8.51 16.17 -14.35 -0.23 -8.74 16 8 N -0.72 -6.69 5.09 -53.64 -0.27 -6.96 16 9 C 0.15 1.68 2.52 -67.76 -0.17 1.51 16 10 H 0.08 1.12 7.59 -51.93 -0.39 0.73 16 11 C -0.12 -1.70 5.67 -26.65 -0.15 -1.86 16 12 C 0.06 1.03 5.11 -3.83 -0.02 1.02 16 13 N -0.51 -8.24 4.06 -228.12 -0.93 -9.16 16 14 C 0.04 0.69 5.31 -4.98 -0.03 0.66 16 15 C 0.45 10.52 7.49 -10.98 -0.08 10.44 16 16 O -0.58 -15.51 14.73 5.55 0.08 -15.43 16 17 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 22 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.08 1.04 2.44 -67.72 -0.17 0.88 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 C -0.15 -1.66 8.58 37.16 0.32 -1.34 16 29 C -0.11 -1.16 4.84 -26.60 -0.13 -1.29 16 30 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.10 0.44 7.90 -52.49 -0.41 0.03 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.06 0.30 7.86 -51.93 -0.41 -0.10 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 1.83 6.69 -51.93 -0.35 1.49 16 42 H 0.09 1.50 5.43 -51.93 -0.28 1.22 16 43 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 48 H 0.06 0.69 6.41 -51.93 -0.33 0.35 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -35.23 408.61 -8.60 -43.83 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.27 Total: 9.85 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.23 Total: 7.15 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.53 Total: -54.63 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.69 Total: -28.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.23 -8.60 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.847 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds