Wall clock time and date at job start Tue Mar 31 2020 23:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99715 * 2 1 4 4 O 1.42899 * 109.47296 * 134.99847 * 3 2 1 5 5 C 1.42894 * 114.00306 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47340 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99891 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.57878 * 324.84537 * 9 8 6 11 11 C 1.53118 * 109.51976 * 85.00692 * 9 8 6 12 12 C 1.53043 * 109.31033 * 177.57930 * 11 9 8 13 13 N 1.46849 * 109.51948 * 300.79513 * 12 11 9 14 14 C 1.46897 * 111.00117 * 185.83688 * 13 12 11 15 15 C 1.50700 * 109.46718 * 75.50147 * 14 13 12 16 16 O 1.21290 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99887 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00016 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47198 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47467 * 119.99550 * 22 20 18 25 25 H 1.48502 * 109.47026 * 239.99693 * 22 20 18 26 26 C 1.46849 * 111.19448 * 61.74542 * 13 12 11 27 27 H 1.08998 * 109.46686 * 58.27101 * 26 13 12 28 28 C 1.53001 * 109.46014 * 178.24066 * 26 13 12 29 29 C 1.53039 * 109.52499 * 298.25137 * 26 13 12 30 30 H 1.07998 * 119.99967 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.99971 * 0.02562 * 1 2 3 32 32 H 1.07995 * 119.99971 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47485 * 14.99393 * 3 2 1 34 34 H 1.09002 * 109.46849 * 254.99349 * 3 2 1 35 35 H 1.09005 * 109.46720 * 60.00471 * 5 4 3 36 36 H 1.08997 * 109.47646 * 300.00597 * 5 4 3 37 37 H 0.96996 * 119.99791 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.50712 * 57.61471 * 11 9 8 39 39 H 1.09004 * 109.50024 * 297.53426 * 11 9 8 40 40 H 1.08999 * 109.46092 * 60.81196 * 12 11 9 41 41 H 1.09001 * 109.46127 * 180.79415 * 12 11 9 42 42 H 1.08998 * 109.47279 * 195.50548 * 14 13 12 43 43 H 1.08998 * 109.47112 * 315.50922 * 14 13 12 44 44 H 0.96996 * 119.99798 * 0.02562 * 17 15 14 45 45 H 0.97000 * 120.00413 * 180.02562 * 21 20 18 46 46 H 1.08994 * 109.47375 * 51.88931 * 28 26 13 47 47 H 1.09004 * 109.47100 * 171.89149 * 28 26 13 48 48 H 1.09005 * 109.47275 * 291.88728 * 28 26 13 49 49 H 1.09000 * 109.50343 * 179.12375 * 29 26 13 50 50 H 1.08995 * 109.50528 * 299.20309 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9938 2.2570 2.0621 7 8 5.0890 1.2109 2.6683 8 7 5.8595 3.2601 2.3091 9 6 6.9151 3.0868 3.3101 10 1 6.5428 2.4743 4.1312 11 6 8.1229 2.4004 2.6664 12 6 9.2448 2.2763 3.6999 13 7 9.6185 3.6124 4.1812 14 6 10.7853 3.5441 5.0711 15 6 12.0303 3.3242 4.2508 16 8 11.9532 3.2338 3.0438 17 7 13.2296 3.2290 4.8585 18 6 14.3623 3.0295 4.1123 19 1 14.2936 2.9490 3.0374 20 6 15.5985 2.9308 4.7387 21 7 15.6822 3.0292 6.0465 22 14 17.1419 2.6596 3.7219 23 1 16.7802 2.5846 2.2836 24 1 18.0819 3.7887 3.9381 25 1 17.7904 1.3894 4.1357 26 6 8.4878 4.2727 4.8460 27 1 8.1471 3.6583 5.6793 28 6 8.9320 5.6401 5.3693 29 6 7.3434 4.4565 3.8467 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2659 34 1 2.4756 1.4867 -0.9926 35 1 3.2687 3.2696 1.3193 36 1 4.3586 2.6398 0.0608 37 1 5.7836 4.0966 1.8241 38 1 8.4710 2.9939 1.8209 39 1 7.8355 1.4076 2.3203 40 1 8.9006 1.6712 4.5386 41 1 10.1111 1.8006 3.2402 42 1 10.8753 4.4787 5.6247 43 1 10.6607 2.7177 5.7708 44 1 13.2913 3.3017 5.8238 45 1 16.5453 2.9607 6.4838 46 1 9.4054 6.2012 4.5636 47 1 8.0637 6.1895 5.7332 48 1 9.6433 5.5039 6.1839 49 1 6.4986 4.9325 4.3444 50 1 7.6789 5.0828 3.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674121611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:24 Heat of formation + Delta-G solvation = -116.206946 kcal Electronic energy + Delta-G solvation = -29221.143598 eV Core-core repulsion = 25055.027796 eV Total energy + Delta-G solvation = -4166.115802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31297 -40.47811 -39.37238 -38.62879 -36.27950 -35.80312 -34.76860 -33.39988 -33.28708 -32.87309 -29.75096 -28.37339 -27.91660 -26.57014 -26.05860 -24.08801 -22.74474 -21.57327 -21.11760 -20.90582 -20.57651 -19.83886 -18.35371 -17.98787 -17.67333 -17.37710 -16.88704 -16.68563 -16.61856 -16.37170 -16.11111 -15.72070 -15.52784 -15.42231 -14.99644 -14.88161 -14.76358 -14.27775 -14.05432 -13.84346 -13.47372 -13.38757 -13.19203 -13.13892 -13.01107 -12.89964 -12.79087 -12.70106 -12.39288 -12.15467 -12.08972 -11.89550 -11.85368 -11.81059 -11.51305 -11.43746 -10.98787 -10.81870 -10.30514 -10.26233 -10.09291 -9.97203 -9.18126 -8.44583 -5.92849 1.19019 1.36869 1.41561 1.55699 1.56303 1.88416 2.09734 2.29132 2.72018 3.07257 3.22096 3.41939 3.64093 3.78155 3.82127 3.96863 4.06544 4.08582 4.16949 4.24925 4.26692 4.31186 4.35626 4.42714 4.44782 4.46486 4.50157 4.51590 4.59833 4.60855 4.81724 4.86634 4.98048 4.99799 5.01427 5.04424 5.14614 5.25787 5.42142 5.43191 5.46885 5.65472 5.69701 5.91383 6.09018 6.10767 6.27598 6.57333 6.64006 7.16118 7.24446 7.60363 8.16914 8.73173 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.001794 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.468462 B =15607.555248 C =16480.910452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.085 3.915 4 O -0.400 6.400 5 C 0.046 3.954 6 C 0.507 3.493 7 O -0.577 6.577 8 N -0.706 5.706 9 C 0.154 3.846 10 H 0.069 0.931 11 C -0.112 4.112 12 C 0.067 3.933 13 N -0.523 5.523 14 C 0.051 3.949 15 C 0.443 3.557 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.330 4.330 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.079 3.921 27 H 0.046 0.954 28 C -0.146 4.146 29 C -0.104 4.104 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.420 0.580 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.051 0.949 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.056 0.944 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.832 5.469 -6.271 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.319 6.319 5 C -0.033 4.033 6 C 0.294 3.706 7 O -0.456 6.456 8 N -0.360 5.360 9 C 0.049 3.951 10 H 0.087 0.913 11 C -0.151 4.151 12 C -0.061 4.061 13 N -0.248 5.248 14 C -0.080 4.080 15 C 0.231 3.769 16 O -0.499 6.499 17 N -0.216 5.216 18 C -0.460 4.460 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.029 4.029 27 H 0.064 0.936 28 C -0.203 4.203 29 C -0.142 4.142 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.122 0.878 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.525 4.786 -6.824 29.717 hybrid contribution 1.129 -0.604 0.433 1.351 sum -27.396 4.182 -6.391 28.441 Atomic orbital electron populations 1.24059 0.94961 1.03538 0.97733 1.22804 0.96399 0.98157 1.02424 1.21788 0.88306 0.96556 0.92430 1.88006 1.45555 1.36637 1.61730 1.22359 0.92646 0.89486 0.98785 1.20986 0.82795 0.83307 0.83523 1.90729 1.73993 1.29045 1.51787 1.45773 1.30497 1.17788 1.41906 1.20883 0.85974 0.97852 0.90421 0.91282 1.21798 0.94293 1.00461 0.98553 1.21899 0.97634 0.89459 0.97148 1.61506 1.04690 1.20146 1.38476 1.21842 0.88878 1.03664 0.93643 1.20841 0.85279 0.82018 0.88796 1.90476 1.86939 1.56140 1.16358 1.41944 1.05512 1.64433 1.09677 1.19676 0.85565 1.48190 0.92537 0.90472 1.25996 1.01596 0.96654 0.97025 1.69677 1.27210 1.50486 1.08936 0.84892 0.77363 0.78247 0.77948 1.19919 1.19498 1.19786 1.21734 0.89905 0.96286 0.94967 0.93576 1.21930 1.02443 0.94994 1.00933 1.21856 0.97606 0.94989 0.99734 0.86938 0.86741 0.87976 0.90474 0.90649 0.86631 0.87359 0.74245 0.91276 0.92942 0.95117 0.93026 0.86367 0.92055 0.77148 0.91405 0.92497 0.89158 0.92400 0.87831 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.31 67.77 0.97 -0.70 16 2 C -0.18 -2.56 9.89 25.64 0.25 -2.30 16 3 C 0.08 1.07 6.35 71.23 0.45 1.52 16 4 O -0.40 -8.20 9.86 -129.94 -1.28 -9.48 16 5 C 0.05 0.62 6.42 71.24 0.46 1.08 16 6 C 0.51 11.04 7.87 87.66 0.69 11.73 16 7 O -0.58 -19.43 16.17 16.00 0.26 -19.17 16 8 N -0.71 -11.70 5.09 -442.01 -2.25 -13.95 16 9 C 0.15 3.36 2.52 45.10 0.11 3.48 16 10 H 0.07 1.79 7.59 -2.39 -0.02 1.77 16 11 C -0.11 -3.22 5.67 30.65 0.17 -3.05 16 12 C 0.07 2.27 5.11 86.33 0.44 2.71 16 13 N -0.52 -16.76 4.06 -875.64 -3.55 -20.31 16 14 C 0.05 1.80 5.31 85.56 0.45 2.25 16 15 C 0.44 21.54 7.49 87.66 0.66 22.20 16 16 O -0.61 -34.53 14.73 -3.06 -0.05 -34.58 16 17 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 18 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 22 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.08 1.78 2.44 44.94 0.11 1.89 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 C -0.15 -2.80 8.58 71.98 0.62 -2.19 16 29 C -0.10 -1.81 4.84 30.68 0.15 -1.66 16 30 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.11 0.74 7.90 -2.91 -0.02 0.72 16 32 H 0.10 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.08 0.61 7.86 -2.39 -0.02 0.59 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.42 3.63 8.60 -92.71 -0.80 2.84 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 2.16 6.69 -2.39 -0.02 2.14 16 42 H 0.12 3.62 5.43 -2.39 -0.01 3.61 16 43 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 44 H 0.39 19.63 7.90 -92.71 -0.73 18.90 16 45 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 48 H 0.06 1.15 6.41 -2.38 -0.02 1.13 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -81.05 408.61 0.06 -81.00 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.58 Total: 34.26 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 6.82 Total: 18.46 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.14 Total: -116.19 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -1.07 Total: -63.24 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -81.05 0.06 -81.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674121611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.210 kcal (2) G-P(sol) polarization free energy of solvation -81.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds