Wall clock time and date at job start Tue Mar 31 2020 23:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 115.56320 * 2 1 4 4 C 1.52991 * 117.49865 * 214.30439 * 2 1 3 5 5 C 1.52998 * 117.49736 * 145.68114 * 2 1 3 6 6 H 1.08999 * 117.50028 * 0.02562 * 5 2 1 7 7 C 1.50705 * 117.51959 * 214.96963 * 5 2 1 8 8 O 1.21284 * 119.99750 * 0.12416 * 7 5 2 9 9 N 1.34770 * 120.00251 * 180.11944 * 7 5 2 10 10 C 1.46498 * 120.00363 * 174.87912 * 9 7 5 11 11 C 1.53007 * 109.52242 * 304.02984 * 10 9 7 12 12 O 1.42897 * 109.46516 * 304.83659 * 11 10 9 13 13 C 1.53116 * 109.52829 * 183.89928 * 10 9 7 14 14 C 1.53177 * 109.20566 * 297.68934 * 13 10 9 15 15 N 1.46848 * 109.55806 * 300.86180 * 14 13 10 16 16 C 1.46900 * 111.00041 * 185.84279 * 15 14 13 17 17 C 1.50695 * 109.47149 * 168.11260 * 16 15 14 18 18 O 1.21290 * 120.00119 * 2.77169 * 17 16 15 19 19 N 1.34771 * 119.99955 * 182.76865 * 17 16 15 20 20 C 1.37100 * 120.00341 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99606 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00285 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00337 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99779 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47475 * 60.00420 * 24 22 20 26 26 H 1.48503 * 109.46832 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47218 * 299.99847 * 24 22 20 28 28 C 1.46846 * 111.19744 * 61.74050 * 15 14 13 29 29 C 1.53037 * 109.52442 * 298.25799 * 28 15 14 30 30 H 1.09007 * 109.47421 * 274.31856 * 1 2 3 31 31 H 1.09004 * 109.47127 * 34.31433 * 1 2 3 32 32 H 1.08990 * 109.47282 * 154.31795 * 1 2 3 33 33 H 1.09007 * 117.50014 * 145.02314 * 4 2 1 34 34 H 1.08998 * 117.51922 * 359.97438 * 4 2 1 35 35 H 0.97007 * 120.00154 * 354.88390 * 9 7 5 36 36 H 1.08990 * 109.47258 * 64.83753 * 11 10 9 37 37 H 1.09001 * 109.47032 * 184.84222 * 11 10 9 38 38 H 0.96703 * 113.99581 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.50436 * 57.68628 * 13 10 9 40 40 H 1.08998 * 109.50861 * 177.81357 * 13 10 9 41 41 H 1.08997 * 109.44512 * 180.82907 * 14 13 10 42 42 H 1.08998 * 109.43710 * 60.87986 * 14 13 10 43 43 H 1.09005 * 109.46564 * 288.11435 * 16 15 14 44 44 H 1.08993 * 109.47223 * 48.10825 * 16 15 14 45 45 H 0.97005 * 120.00521 * 359.97438 * 19 17 16 46 46 H 0.96998 * 120.00795 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.45915 * 178.24666 * 28 15 14 48 48 H 1.08997 * 109.46622 * 58.28046 * 28 15 14 49 49 H 1.09004 * 109.50549 * 299.24039 * 29 28 15 50 50 H 1.08997 * 109.50395 * 179.12640 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 1.6112 -1.8585 1.2682 7 6 3.5294 -0.7815 1.4610 8 8 3.9712 0.3465 1.4032 9 7 4.1947 -1.7314 2.1475 10 6 5.5056 -1.4322 2.7291 11 6 6.4498 -0.9344 1.6328 12 8 6.5046 -1.8971 0.5782 13 6 6.0840 -2.6987 3.3662 14 6 5.1644 -3.1561 4.5027 15 7 5.0526 -2.0882 5.5045 16 6 4.2903 -2.5424 6.6753 17 6 4.4410 -1.5418 7.7919 18 8 5.0753 -0.5236 7.6124 19 7 3.8709 -1.7781 8.9900 20 6 4.0075 -0.8675 10.0058 21 1 4.5724 0.0390 9.8459 22 6 3.4193 -1.1109 11.2409 23 7 2.7325 -2.2141 11.4356 24 14 3.6061 0.1295 12.6250 25 1 3.0300 1.4318 12.2038 26 1 2.8909 -0.3620 13.8301 27 1 5.0464 0.3046 12.9419 28 6 4.4565 -0.8774 4.9257 29 6 5.3542 -0.3517 3.8034 30 1 -0.3634 0.0774 1.0248 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4453 33 1 3.1715 -0.8753 -1.2682 34 1 1.6115 -1.8590 -1.2678 35 1 3.8057 -2.6133 2.2565 36 1 6.0830 0.0139 1.2404 37 1 7.4475 -0.7940 2.0487 38 1 7.0862 -1.6470 -0.1528 39 1 6.1544 -3.4848 2.6145 40 1 7.0758 -2.4854 3.7646 41 1 5.5802 -4.0493 4.9688 42 1 4.1766 -3.3823 4.1013 43 1 3.2372 -2.6347 6.4096 44 1 4.6688 -3.5110 7.0018 45 1 3.3633 -2.5921 9.1336 46 1 2.3221 -2.3843 12.2979 47 1 4.3582 -0.1156 5.6992 48 1 3.4719 -1.1144 4.5225 49 1 6.3347 -0.1014 4.2086 50 1 4.9037 0.5381 3.3637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674319547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:08 Heat of formation + Delta-G solvation = -91.127714 kcal Electronic energy + Delta-G solvation = -30806.321395 eV Core-core repulsion = 26641.293110 eV Total energy + Delta-G solvation = -4165.028285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83258 -39.08387 -38.07750 -36.73292 -36.48784 -34.56823 -33.77834 -31.86772 -31.18425 -30.75159 -28.99144 -28.23137 -25.77118 -24.53208 -23.95226 -23.14698 -21.71925 -21.11561 -20.17505 -19.21847 -19.07908 -17.83780 -17.69684 -17.37300 -16.15521 -15.67130 -15.61642 -15.27346 -15.04974 -14.84143 -14.59765 -14.31467 -14.01389 -13.93036 -13.73495 -13.54792 -13.52827 -13.12198 -12.99409 -12.91436 -12.45152 -12.27966 -12.15359 -11.92483 -11.69792 -11.56024 -11.47679 -11.25308 -11.05557 -10.98894 -10.65378 -10.55289 -10.43314 -10.38302 -10.33900 -10.19272 -10.16304 -9.46839 -9.44127 -9.04740 -8.39705 -7.95033 -7.79834 -6.39653 -3.80298 2.44643 3.00605 3.21563 3.26922 3.31497 3.60551 3.91844 4.02424 4.05805 4.26664 4.38925 4.51217 4.54738 4.65812 4.79573 4.94536 5.04878 5.05176 5.12902 5.26825 5.30135 5.32762 5.38394 5.41516 5.42699 5.48939 5.55068 5.66123 5.67041 5.73010 5.76439 5.78253 5.87173 5.90063 5.92667 6.04884 6.05949 6.14440 6.30272 6.38527 6.54797 6.59197 7.32420 7.44755 7.45610 7.50666 7.57107 8.08709 8.21662 8.64390 9.20454 9.57007 10.09164 10.78158 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.002586 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.951508 B =10823.262084 C =11874.593073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.191 4.191 6 H 0.119 0.881 7 C 0.550 3.450 8 O -0.542 6.542 9 N -0.705 5.705 10 C 0.184 3.816 11 C 0.063 3.937 12 O -0.569 6.569 13 C -0.112 4.112 14 C 0.054 3.946 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.062 3.938 29 C -0.121 4.121 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.374 0.626 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.391 0.609 46 H 0.272 0.728 47 H 0.103 0.897 48 H 0.020 0.980 49 H 0.081 0.919 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -3.770 -24.168 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.213 4.213 6 H 0.137 0.863 7 C 0.337 3.663 8 O -0.419 6.419 9 N -0.356 5.356 10 C 0.098 3.902 11 C -0.015 4.015 12 O -0.373 6.373 13 C -0.150 4.150 14 C -0.074 4.074 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.066 4.066 29 C -0.160 4.160 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.220 0.780 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.038 0.962 49 H 0.099 0.901 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.478 -2.547 -23.589 23.731 hybrid contribution -0.852 -0.500 0.428 1.076 sum -0.374 -3.046 -23.162 23.364 Atomic orbital electron populations 1.21406 0.92301 1.02096 1.02336 1.22363 0.95174 0.95089 1.01441 0.86521 1.23055 1.02969 1.01488 0.90890 1.22305 0.98006 1.05209 0.95731 0.86270 1.19514 0.84407 0.84590 0.77807 1.90620 1.68682 1.20921 1.61728 1.45869 1.19789 1.15117 1.54828 1.20476 0.81782 0.96453 0.91492 1.22650 0.98117 0.92432 0.88305 1.86436 1.70797 1.47378 1.32699 1.21837 1.00281 0.96245 0.96680 1.22140 0.97697 0.94819 0.92787 1.61528 1.52245 1.04319 1.05783 1.21829 0.96233 0.98867 0.91552 1.19742 0.84735 0.88636 0.83883 1.90486 1.44557 1.28958 1.82033 1.41860 1.46957 1.21559 1.09820 1.19646 1.31274 1.02054 0.89790 0.87991 1.25244 0.96553 0.97393 0.98740 1.69598 1.34577 1.24995 1.25314 0.85931 0.78559 0.80156 0.79651 1.19931 1.21009 1.19899 1.22133 0.93843 0.93613 0.96981 1.21938 1.02176 0.97858 0.94028 0.91838 0.91712 0.92434 0.88389 0.88012 0.76745 0.91363 0.92992 0.77962 0.90371 0.89489 0.90437 0.95575 0.93615 0.89434 0.77542 0.91864 0.87854 0.96165 0.90089 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.19 37.16 0.38 -0.52 16 2 C -0.12 -1.11 5.92 -90.63 -0.54 -1.65 16 3 H 0.12 1.26 7.67 -51.93 -0.40 0.86 16 4 C -0.15 -1.18 9.88 -26.74 -0.26 -1.44 16 5 C -0.19 -1.83 5.91 -91.77 -0.54 -2.38 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.55 6.80 7.02 -10.99 -0.08 6.72 16 8 O -0.54 -8.29 12.55 5.55 0.07 -8.22 16 9 N -0.71 -7.93 3.97 -47.49 -0.19 -8.12 16 10 C 0.18 2.23 0.44 -131.69 -0.06 2.17 16 11 C 0.06 0.72 5.58 37.16 0.21 0.92 16 12 O -0.57 -5.70 13.01 -35.23 -0.46 -6.16 16 13 C -0.11 -1.27 4.82 -26.58 -0.13 -1.40 16 14 C 0.05 0.67 5.30 -3.76 -0.02 0.65 16 15 N -0.51 -8.48 4.38 -236.03 -1.03 -9.52 16 16 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 17 C 0.44 10.52 7.51 -10.99 -0.08 10.44 16 18 O -0.58 -15.53 13.93 5.55 0.08 -15.45 16 19 N -0.57 -14.38 5.29 -10.97 -0.06 -14.43 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.06 1.05 4.96 -3.83 -0.02 1.03 16 29 C -0.12 -1.81 4.77 -26.65 -0.13 -1.94 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.40 3.82 7.36 -40.82 -0.30 3.52 16 36 H 0.07 0.88 6.22 -51.93 -0.32 0.56 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.37 2.28 9.12 45.56 0.42 2.69 16 39 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.89 7.99 -51.93 -0.42 0.48 16 42 H 0.03 0.29 6.94 -51.93 -0.36 -0.07 16 43 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 44 H 0.09 1.40 7.95 -51.93 -0.41 0.99 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.10 2.16 5.86 -51.93 -0.30 1.86 16 48 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.09 1.38 6.26 -51.93 -0.33 1.06 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -33.27 395.35 -8.75 -42.01 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -7.27 Total: 16.28 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.54 Total: 5.42 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.56 Total: -56.04 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.31 Total: -29.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.27 -8.75 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674319547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.118 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds