Wall clock time and date at job start Tue Mar 31 2020 23:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.06721 * 2 1 4 4 C 1.54000 * 109.91907 * 238.79680 * 2 1 3 5 5 H 1.08999 * 110.30609 * 358.43552 * 4 2 1 6 6 N 1.46496 * 110.30874 * 120.50694 * 4 2 1 7 7 C 1.34775 * 119.99642 * 203.61292 * 6 4 2 8 8 O 1.21279 * 120.00300 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99773 * 180.02562 * 7 6 4 10 10 O 1.42905 * 109.47264 * 179.97438 * 9 7 6 11 11 C 1.42901 * 114.00134 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.52998 * 117.50140 * 243.75198 * 12 11 10 14 14 C 1.53001 * 117.49994 * 175.08855 * 12 11 10 15 15 C 1.54598 * 105.22212 * 239.47316 * 4 2 1 16 16 C 1.55193 * 102.80286 * 338.01034 * 15 4 2 17 17 N 1.47892 * 109.91655 * 121.20511 * 2 1 3 18 18 C 1.46901 * 111.00252 * 265.19633 * 17 2 1 19 19 C 1.50703 * 109.47160 * 169.99777 * 18 17 2 20 20 O 1.21291 * 120.00309 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99737 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00162 * 180.02562 * 21 19 18 23 23 H 1.08006 * 119.99614 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00460 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00407 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99899 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47609 * 89.99485 * 26 24 22 28 28 H 1.48502 * 109.47216 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46772 * 329.99512 * 26 24 22 30 30 H 1.08994 * 109.46795 * 181.19762 * 1 2 3 31 31 H 1.08998 * 109.47368 * 301.20903 * 1 2 3 32 32 H 1.09004 * 109.46679 * 61.20698 * 1 2 3 33 33 H 0.96998 * 120.00192 * 23.60816 * 6 4 2 34 34 H 1.09001 * 109.47438 * 59.99564 * 9 7 6 35 35 H 1.09004 * 109.47113 * 299.99819 * 9 7 6 36 36 H 1.08994 * 109.47036 * 300.00109 * 11 10 9 37 37 H 1.09002 * 109.46796 * 60.00253 * 11 10 9 38 38 H 1.09004 * 115.55051 * 29.41464 * 12 11 10 39 39 H 1.08999 * 117.49618 * 359.97438 * 13 12 11 40 40 H 1.08995 * 117.50583 * 145.01784 * 13 12 11 41 41 H 1.09000 * 117.49546 * 214.98027 * 14 12 11 42 42 H 1.08993 * 117.49632 * 0.02562 * 14 12 11 43 43 H 1.08994 * 110.72188 * 96.35334 * 15 4 2 44 44 H 1.09002 * 110.72161 * 219.63324 * 15 4 2 45 45 H 1.08999 * 110.68614 * 278.98954 * 16 15 4 46 46 H 1.09004 * 110.77962 * 155.93067 * 16 15 4 47 47 H 1.08990 * 109.47440 * 290.00155 * 18 17 2 48 48 H 1.09002 * 109.47169 * 50.00259 * 18 17 2 49 49 H 0.97000 * 120.00404 * 0.02562 * 21 19 18 50 50 H 0.97001 * 120.00581 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2384 5 1 1.2228 -1.1386 -1.8259 6 7 2.8836 0.1378 -2.0573 7 6 3.0508 -0.1173 -3.3701 8 8 2.5153 -1.0820 -3.8734 9 6 3.9040 0.7958 -4.2124 10 8 3.9267 0.3184 -5.5592 11 6 4.7121 1.1177 -6.4460 12 6 4.6650 0.5159 -7.8518 13 6 5.9783 0.0009 -8.4442 14 6 5.3527 1.2928 -8.9763 15 6 2.9054 -1.9132 -0.6783 16 6 3.2682 -1.4184 0.7472 17 7 2.0338 -0.7204 1.1893 18 6 2.3212 0.2123 2.2873 19 6 2.5937 -0.5657 3.5489 20 8 2.5531 -1.7778 3.5347 21 7 2.8826 0.0856 4.6929 22 6 3.1311 -0.6221 5.8406 23 1 3.0957 -1.7015 5.8277 24 6 3.4294 0.0492 7.0200 25 7 3.6671 -0.6290 8.1201 26 14 3.4913 1.9161 7.0420 27 1 2.1455 2.4523 7.3688 28 1 4.4662 2.3670 8.0675 29 1 3.9114 2.4132 5.7073 30 1 -0.3633 -1.0274 0.0215 31 1 -0.3634 0.5325 0.8789 32 1 -0.3633 0.4950 -0.9007 33 1 3.3122 0.9093 -1.6547 34 1 4.9192 0.8125 -3.8160 35 1 3.4888 1.8035 -4.1907 36 1 4.3131 2.1317 -6.4709 37 1 5.7440 1.1417 -6.0958 38 1 3.7535 -0.0279 -8.1002 39 1 6.8759 0.0912 -7.8325 40 1 5.9308 -0.8813 -9.0826 41 1 4.8939 1.2598 -9.9644 42 1 5.8391 2.2324 -8.7144 43 1 2.3200 -2.8314 -0.6314 44 1 3.8039 -2.0575 -1.2783 45 1 4.1098 -0.7267 0.7121 46 1 3.4904 -2.2598 1.4036 47 1 3.1950 0.8127 2.0347 48 1 1.4632 0.8666 2.4421 49 1 2.9147 1.0550 4.7044 50 1 3.8757 -0.1604 8.9434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691643337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:21 Heat of formation + Delta-G solvation = -74.202806 kcal Electronic energy + Delta-G solvation = -29054.468699 eV Core-core repulsion = 24890.174333 eV Total energy + Delta-G solvation = -4164.294366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48563 -39.29312 -38.53672 -37.76903 -36.73637 -34.53349 -33.87520 -31.75641 -31.35924 -31.27575 -29.23218 -27.02216 -26.35456 -24.98601 -23.95301 -22.86670 -21.80397 -21.22420 -20.57271 -20.18670 -19.36527 -18.36095 -17.66739 -17.29198 -16.73967 -16.46225 -15.99598 -15.81118 -15.19442 -15.07169 -14.92267 -14.83107 -14.42518 -14.36123 -13.89701 -13.73747 -13.28555 -13.02966 -12.96749 -12.83507 -12.60894 -12.42938 -12.17409 -12.02507 -11.98622 -11.66314 -11.60175 -11.40643 -11.31369 -11.26416 -10.94744 -10.93114 -10.80243 -10.77998 -10.61421 -10.03834 -10.00518 -9.98502 -9.56765 -9.28175 -8.64448 -8.19302 -8.11070 -6.31550 -3.82971 2.33487 2.39676 2.99683 3.04851 3.13121 3.22471 3.53479 3.73137 3.91175 4.08946 4.27006 4.33417 4.38447 4.45505 4.59117 4.60072 4.65363 4.72307 4.79317 4.81861 4.95770 4.98591 5.11959 5.15301 5.18290 5.19815 5.30923 5.38974 5.40930 5.50836 5.56375 5.61662 5.69269 5.71331 5.76852 5.84575 5.87996 5.92198 6.07694 6.22009 6.28920 6.37329 6.59969 7.03514 7.06842 7.19813 7.57752 7.94967 8.14035 8.59901 8.95147 9.41970 9.83447 10.81680 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.001782 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.835264 B =15709.349022 C =16202.396021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 H 0.055 0.945 4 C 0.139 3.861 5 H 0.102 0.898 6 N -0.723 5.723 7 C 0.514 3.486 8 O -0.515 6.515 9 C 0.044 3.956 10 O -0.360 6.360 11 C 0.092 3.908 12 C -0.154 4.154 13 C -0.177 4.177 14 C -0.173 4.173 15 C -0.130 4.130 16 C 0.040 3.960 17 N -0.484 5.484 18 C 0.035 3.965 19 C 0.454 3.546 20 O -0.556 6.556 21 N -0.593 5.593 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.271 1.271 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.101 0.899 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.369 0.631 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 10.657 -29.076 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 H 0.073 0.927 4 C 0.035 3.965 5 H 0.120 0.880 6 N -0.377 5.377 7 C 0.299 3.701 8 O -0.389 6.389 9 C -0.036 4.036 10 O -0.278 6.278 11 C 0.015 3.985 12 C -0.172 4.172 13 C -0.214 4.214 14 C -0.210 4.210 15 C -0.170 4.170 16 C -0.087 4.087 17 N -0.209 5.209 18 C -0.097 4.097 19 C 0.240 3.760 20 O -0.437 6.437 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.120 0.880 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.359 8.573 -29.089 30.356 hybrid contribution 1.165 2.895 0.386 3.144 sum 2.524 11.468 -28.702 31.011 Atomic orbital electron populations 1.21723 0.92981 1.03143 1.01307 1.22659 0.97206 0.95958 0.89472 0.92681 1.21920 0.93692 0.90007 0.90923 0.88027 1.46075 1.52372 1.30606 1.08625 1.20196 0.81668 0.86056 0.82161 1.90751 1.47337 1.28716 1.72090 1.22195 0.99977 0.97125 0.84281 1.88016 1.71142 1.51730 1.16889 1.22081 0.94530 0.93612 0.88257 1.22114 0.98205 1.04520 0.92399 1.23096 0.96445 0.97947 1.03876 1.22997 1.03849 0.96150 0.98048 1.22957 1.00053 0.98331 0.95613 1.23361 0.90291 0.99545 0.95514 1.64456 1.27703 1.24703 1.04027 1.22103 1.00714 0.94478 0.92417 1.19577 0.83835 0.88574 0.84036 1.90559 1.54690 1.13554 1.84919 1.42203 1.64186 1.07607 1.09301 1.19425 1.44543 0.94812 0.84469 0.86278 1.25026 0.97617 0.98343 0.95167 1.69618 1.46821 1.35693 1.00076 0.86679 0.78891 0.85566 0.78248 1.19628 1.20228 1.19639 0.91291 0.92108 0.92580 0.76740 0.90204 0.90225 0.92618 0.92907 0.86593 0.88611 0.88456 0.88289 0.88636 0.89576 0.90852 0.94416 0.88039 0.93241 0.89249 0.79827 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.32 37.16 0.35 -1.09 16 2 C 0.06 0.63 2.83 -66.64 -0.19 0.45 16 3 H 0.06 0.53 7.25 -51.93 -0.38 0.15 16 4 C 0.14 1.55 2.95 -66.57 -0.20 1.35 16 5 H 0.10 1.25 7.14 -51.93 -0.37 0.88 16 6 N -0.72 -6.45 5.07 -52.49 -0.27 -6.72 16 7 C 0.51 5.55 7.90 -10.98 -0.09 5.46 16 8 O -0.51 -8.01 16.17 -14.35 -0.23 -8.24 16 9 C 0.04 0.34 6.42 36.01 0.23 0.57 16 10 O -0.36 -3.69 9.88 -55.14 -0.54 -4.23 16 11 C 0.09 0.63 6.22 37.16 0.23 0.87 16 12 C -0.15 -1.08 6.05 -90.62 -0.55 -1.63 16 13 C -0.18 -1.04 10.18 -26.69 -0.27 -1.32 16 14 C -0.17 -0.88 10.26 -26.69 -0.27 -1.15 16 15 C -0.13 -1.64 6.80 -24.73 -0.17 -1.81 16 16 C 0.04 0.59 5.94 -1.76 -0.01 0.58 16 17 N -0.48 -7.30 4.54 -223.83 -1.02 -8.32 16 18 C 0.03 0.55 5.19 -4.97 -0.03 0.53 16 19 C 0.45 10.08 7.61 -10.98 -0.08 9.99 16 20 O -0.56 -14.65 14.64 5.55 0.08 -14.56 16 21 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 22 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 26 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.45 8.31 -40.82 -0.34 2.11 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 7.87 -51.93 -0.41 -0.11 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.51 8.03 -51.93 -0.42 0.10 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 46 H 0.10 1.82 7.10 -51.93 -0.37 1.45 16 47 H 0.05 0.68 7.83 -51.93 -0.41 0.27 16 48 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 49 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -35.74 409.64 -9.47 -45.20 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.37 Total: 9.91 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.29 Total: 5.17 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.56 Total: -53.79 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.70 Total: -27.04 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.74 -9.47 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691643337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.001 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds