Wall clock time and date at job start Tue Mar 31 2020 23:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.06721 * 2 1 4 4 C 1.54000 * 109.91907 * 238.79680 * 2 1 3 5 5 H 1.08999 * 110.30609 * 358.43552 * 4 2 1 6 6 N 1.46496 * 110.30874 * 120.50694 * 4 2 1 7 7 C 1.34775 * 119.99642 * 203.61292 * 6 4 2 8 8 O 1.21279 * 120.00300 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99773 * 180.02562 * 7 6 4 10 10 O 1.42905 * 109.47264 * 179.97438 * 9 7 6 11 11 C 1.42901 * 114.00134 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.52998 * 117.50140 * 243.75198 * 12 11 10 14 14 C 1.53001 * 117.49994 * 175.08855 * 12 11 10 15 15 C 1.54598 * 105.22212 * 239.47316 * 4 2 1 16 16 C 1.55193 * 102.80286 * 338.01034 * 15 4 2 17 17 N 1.47892 * 109.91655 * 121.20511 * 2 1 3 18 18 C 1.46901 * 111.00252 * 265.19633 * 17 2 1 19 19 C 1.50703 * 109.47160 * 169.99777 * 18 17 2 20 20 O 1.21291 * 120.00309 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99737 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00162 * 180.02562 * 21 19 18 23 23 H 1.08006 * 119.99614 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00460 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00407 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99899 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47609 * 89.99485 * 26 24 22 28 28 H 1.48502 * 109.47216 * 210.00123 * 26 24 22 29 29 H 1.48500 * 109.46772 * 329.99512 * 26 24 22 30 30 H 1.08994 * 109.46795 * 181.19762 * 1 2 3 31 31 H 1.08998 * 109.47368 * 301.20903 * 1 2 3 32 32 H 1.09004 * 109.46679 * 61.20698 * 1 2 3 33 33 H 0.96998 * 120.00192 * 23.60816 * 6 4 2 34 34 H 1.09001 * 109.47438 * 59.99564 * 9 7 6 35 35 H 1.09004 * 109.47113 * 299.99819 * 9 7 6 36 36 H 1.08994 * 109.47036 * 300.00109 * 11 10 9 37 37 H 1.09002 * 109.46796 * 60.00253 * 11 10 9 38 38 H 1.09004 * 115.55051 * 29.41464 * 12 11 10 39 39 H 1.08999 * 117.49618 * 359.97438 * 13 12 11 40 40 H 1.08995 * 117.50583 * 145.01784 * 13 12 11 41 41 H 1.09000 * 117.49546 * 214.98027 * 14 12 11 42 42 H 1.08993 * 117.49632 * 0.02562 * 14 12 11 43 43 H 1.08994 * 110.72188 * 96.35334 * 15 4 2 44 44 H 1.09002 * 110.72161 * 219.63324 * 15 4 2 45 45 H 1.08999 * 110.68614 * 278.98954 * 16 15 4 46 46 H 1.09004 * 110.77962 * 155.93067 * 16 15 4 47 47 H 1.08990 * 109.47440 * 290.00155 * 18 17 2 48 48 H 1.09002 * 109.47169 * 50.00259 * 18 17 2 49 49 H 0.97000 * 120.00404 * 0.02562 * 21 19 18 50 50 H 0.97001 * 120.00581 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2384 5 1 1.2228 -1.1386 -1.8259 6 7 2.8836 0.1378 -2.0573 7 6 3.0508 -0.1173 -3.3701 8 8 2.5153 -1.0820 -3.8734 9 6 3.9040 0.7958 -4.2124 10 8 3.9267 0.3184 -5.5592 11 6 4.7121 1.1177 -6.4460 12 6 4.6650 0.5159 -7.8518 13 6 5.9783 0.0009 -8.4442 14 6 5.3527 1.2928 -8.9763 15 6 2.9054 -1.9132 -0.6783 16 6 3.2682 -1.4184 0.7472 17 7 2.0338 -0.7204 1.1893 18 6 2.3212 0.2123 2.2873 19 6 2.5937 -0.5657 3.5489 20 8 2.5531 -1.7778 3.5347 21 7 2.8826 0.0856 4.6929 22 6 3.1311 -0.6221 5.8406 23 1 3.0957 -1.7015 5.8277 24 6 3.4294 0.0492 7.0200 25 7 3.6671 -0.6290 8.1201 26 14 3.4913 1.9161 7.0420 27 1 2.1455 2.4523 7.3688 28 1 4.4662 2.3670 8.0675 29 1 3.9114 2.4132 5.7073 30 1 -0.3633 -1.0274 0.0215 31 1 -0.3634 0.5325 0.8789 32 1 -0.3633 0.4950 -0.9007 33 1 3.3122 0.9093 -1.6547 34 1 4.9192 0.8125 -3.8160 35 1 3.4888 1.8035 -4.1907 36 1 4.3131 2.1317 -6.4709 37 1 5.7440 1.1417 -6.0958 38 1 3.7535 -0.0279 -8.1002 39 1 6.8759 0.0912 -7.8325 40 1 5.9308 -0.8813 -9.0826 41 1 4.8939 1.2598 -9.9644 42 1 5.8391 2.2324 -8.7144 43 1 2.3200 -2.8314 -0.6314 44 1 3.8039 -2.0575 -1.2783 45 1 4.1098 -0.7267 0.7121 46 1 3.4904 -2.2598 1.4036 47 1 3.1950 0.8127 2.0347 48 1 1.4632 0.8666 2.4421 49 1 2.9147 1.0550 4.7044 50 1 3.8757 -0.1604 8.9434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691643337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:20 Heat of formation + Delta-G solvation = -102.076416 kcal Electronic energy + Delta-G solvation = -29055.677390 eV Core-core repulsion = 24890.174333 eV Total energy + Delta-G solvation = -4165.503057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42416 -40.44843 -39.51695 -38.91028 -37.29592 -36.02898 -35.34856 -33.73917 -32.45714 -32.29247 -29.90177 -28.22162 -27.28799 -25.86038 -25.64369 -23.26174 -22.79928 -21.78566 -21.50243 -21.29694 -20.99869 -20.18549 -18.32505 -18.18594 -17.57944 -17.31007 -17.25086 -16.75303 -16.52001 -16.23704 -16.19734 -15.70944 -15.41372 -15.15688 -15.08222 -14.97896 -14.65295 -14.40347 -14.17010 -13.85790 -13.58926 -13.46414 -13.42664 -12.99087 -12.96687 -12.76542 -12.42916 -12.40093 -12.37507 -12.35816 -12.13777 -12.06600 -11.95558 -11.75335 -11.46969 -11.38898 -11.26623 -10.87698 -10.51480 -10.38859 -10.21766 -10.14147 -9.32310 -8.38908 -5.99834 1.30801 1.37738 1.46132 1.55063 1.72470 2.00306 2.25116 2.60441 2.76786 3.04433 3.16594 3.23505 3.44522 3.68849 3.72946 3.91262 3.96110 4.01628 4.13936 4.17154 4.21118 4.22460 4.28794 4.30899 4.35470 4.37807 4.45592 4.49470 4.51762 4.70271 4.73504 4.77618 4.81381 4.90188 5.01135 5.01631 5.04138 5.12211 5.21389 5.24217 5.37547 5.43824 5.55456 5.88779 5.96169 6.08190 6.08945 6.52675 6.62838 6.91847 7.21422 7.43329 8.02054 8.78980 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.001782 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.835264 B =15709.349022 C =16202.396021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H 0.091 0.909 4 C 0.148 3.852 5 H 0.088 0.912 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.572 6.572 9 C 0.046 3.954 10 O -0.398 6.398 11 C 0.091 3.909 12 C -0.176 4.176 13 C -0.184 4.184 14 C -0.157 4.157 15 C -0.124 4.124 16 C 0.045 3.955 17 N -0.513 5.513 18 C 0.047 3.953 19 C 0.452 3.548 20 O -0.608 6.608 21 N -0.593 5.593 22 C -0.327 4.327 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.258 1.258 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.417 0.583 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.122 0.878 49 H 0.390 0.610 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 16.009 -31.061 35.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 H 0.108 0.892 4 C 0.042 3.958 5 H 0.106 0.894 6 N -0.360 5.360 7 C 0.298 3.702 8 O -0.450 6.450 9 C -0.033 4.033 10 O -0.318 6.318 11 C 0.015 3.985 12 C -0.194 4.194 13 C -0.221 4.221 14 C -0.194 4.194 15 C -0.164 4.164 16 C -0.083 4.083 17 N -0.238 5.238 18 C -0.084 4.084 19 C 0.239 3.761 20 O -0.491 6.491 21 N -0.235 5.235 22 C -0.456 4.456 23 H 0.070 0.930 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.255 0.745 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.105 0.895 48 H 0.139 0.861 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.001 13.971 -31.093 34.147 hybrid contribution 0.948 1.038 0.974 1.710 sum 2.949 15.009 -30.120 33.781 Atomic orbital electron populations 1.21739 0.92611 1.02257 1.02501 1.22670 0.97337 0.97062 0.87318 0.89171 1.21657 0.93228 0.89835 0.91032 0.89371 1.45868 1.51593 1.30544 1.07997 1.20899 0.81066 0.85642 0.82566 1.90734 1.49779 1.31305 1.73215 1.22346 1.00831 0.97296 0.82840 1.87973 1.72087 1.53384 1.18318 1.22220 0.94998 0.93877 0.87379 1.22157 0.97843 1.05830 0.93594 1.23177 0.96204 0.98601 1.04071 1.23081 1.02561 0.96247 0.97543 1.22850 1.00257 0.98504 0.94748 1.23188 0.91124 0.98627 0.95355 1.64329 1.27988 1.25927 1.05582 1.22031 1.03625 0.93819 0.88933 1.20926 0.81085 0.88484 0.85560 1.90551 1.56057 1.16512 1.86027 1.42013 1.64862 1.08349 1.08304 1.18983 1.46792 0.92573 0.87287 0.92971 1.26134 0.96020 1.05646 0.93709 1.69813 1.47861 1.38960 1.01185 0.85347 0.79462 0.76191 0.80376 1.18238 1.20239 1.15068 0.93306 0.91820 0.90439 0.74497 0.87452 0.86817 0.90868 0.91525 0.88663 0.87950 0.88733 0.87757 0.87087 0.91318 0.90514 0.92520 0.92576 0.89452 0.86050 0.77487 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.32 71.98 0.67 -1.83 16 2 C 0.06 1.23 2.83 45.06 0.13 1.36 16 3 H 0.09 1.16 7.25 -2.39 -0.02 1.14 16 4 C 0.15 3.02 2.95 45.87 0.14 3.15 16 5 H 0.09 2.11 7.14 -2.39 -0.02 2.10 16 6 N -0.71 -10.31 5.07 -438.37 -2.22 -12.53 16 7 C 0.51 9.97 7.90 87.66 0.69 10.66 16 8 O -0.57 -17.73 16.17 16.01 0.26 -17.48 16 9 C 0.05 0.55 6.42 71.24 0.46 1.00 16 10 O -0.40 -7.53 9.88 -129.94 -1.28 -8.82 16 11 C 0.09 1.06 6.22 71.98 0.45 1.51 16 12 C -0.18 -2.31 6.05 -10.80 -0.07 -2.37 16 13 C -0.18 -1.98 10.18 30.62 0.31 -1.67 16 14 C -0.16 -1.30 10.26 30.62 0.31 -0.99 16 15 C -0.12 -3.12 6.80 31.89 0.22 -2.90 16 16 C 0.04 1.29 5.94 86.74 0.52 1.80 16 17 N -0.51 -14.52 4.54 -862.07 -3.91 -18.43 16 18 C 0.05 1.33 5.19 85.56 0.44 1.78 16 19 C 0.45 19.88 7.61 87.66 0.67 20.55 16 20 O -0.61 -33.55 14.64 -3.06 -0.04 -33.59 16 21 N -0.59 -27.25 5.09 -306.98 -1.56 -28.82 16 22 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 23 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 25 N -0.94 -56.45 13.96 21.66 0.30 -56.14 16 26 Si 0.97 37.85 27.74 68.60 1.90 39.75 16 27 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 28 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 29 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.42 3.04 8.31 -92.71 -0.77 2.27 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.56 7.87 -2.39 -0.02 0.54 16 38 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.10 0.94 8.03 -2.39 -0.02 0.92 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 45 H 0.06 1.40 7.81 -2.39 -0.02 1.38 16 46 H 0.06 2.13 7.10 -2.39 -0.02 2.11 16 47 H 0.09 1.89 7.83 -2.39 -0.02 1.87 16 48 H 0.12 2.74 8.08 -2.39 -0.02 2.72 16 49 H 0.39 14.52 5.76 -92.71 -0.53 13.98 16 50 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -87.67 409.64 -0.72 -88.39 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.41 Total: 34.24 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.26 Total: 13.43 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.39 Total: -115.93 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -1.07 Total: -59.88 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Total: -87.67 -0.72 -88.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691643337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.688 kcal (2) G-P(sol) polarization free energy of solvation -87.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds