Wall clock time and date at job start Tue Mar 31 2020 23:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.36779 * 2 1 4 4 C 1.54385 * 110.41003 * 237.65025 * 2 1 3 5 5 H 1.08995 * 110.32619 * 336.14440 * 4 2 1 6 6 N 1.46500 * 110.32284 * 98.25615 * 4 2 1 7 7 C 1.34777 * 119.99886 * 204.99976 * 6 4 2 8 8 O 1.21364 * 119.99589 * 359.97438 * 7 6 4 9 9 C 1.49080 * 119.99917 * 179.97438 * 7 6 4 10 10 O 1.20779 * 120.00392 * 359.97438 * 9 7 6 11 11 C 1.50701 * 119.99782 * 179.97438 * 9 7 6 12 12 C 1.53005 * 109.47250 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47014 * 299.99684 * 11 9 7 14 14 C 1.52999 * 109.47416 * 59.99899 * 11 9 7 15 15 C 1.54266 * 105.05754 * 217.24911 * 4 2 1 16 16 C 1.54375 * 105.06062 * 0.02562 * 15 4 2 17 17 N 1.48556 * 110.50984 * 122.41953 * 2 1 3 18 18 C 1.46901 * 110.99998 * 277.86739 * 17 2 1 19 19 C 1.50701 * 109.47218 * 169.99964 * 18 17 2 20 20 O 1.21291 * 120.00120 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99836 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99715 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00202 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99724 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00219 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99560 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46745 * 90.00638 * 26 24 22 28 28 H 1.48504 * 109.46637 * 210.00112 * 26 24 22 29 29 H 1.48493 * 109.47082 * 330.00257 * 26 24 22 30 30 H 1.09003 * 109.47098 * 180.70062 * 1 2 3 31 31 H 1.08995 * 109.47051 * 300.70134 * 1 2 3 32 32 H 1.08997 * 109.46789 * 60.70435 * 1 2 3 33 33 H 0.96999 * 120.00349 * 24.99198 * 6 4 2 34 34 H 1.09003 * 109.46841 * 59.99922 * 12 11 9 35 35 H 1.09002 * 109.47400 * 179.97438 * 12 11 9 36 36 H 1.08992 * 109.46928 * 300.00156 * 12 11 9 37 37 H 1.09002 * 109.47003 * 60.00805 * 13 11 9 38 38 H 1.09005 * 109.47302 * 179.97438 * 13 11 9 39 39 H 1.08996 * 109.47401 * 300.00173 * 13 11 9 40 40 H 1.09004 * 109.46609 * 60.00279 * 14 11 9 41 41 H 1.09002 * 109.47195 * 179.97438 * 14 11 9 42 42 H 1.08994 * 109.47326 * 300.00025 * 14 11 9 43 43 H 1.09001 * 110.32231 * 118.89861 * 15 4 2 44 44 H 1.08996 * 110.32002 * 241.00300 * 15 4 2 45 45 H 1.08996 * 110.41381 * 142.63179 * 16 15 4 46 46 H 1.09007 * 110.41242 * 265.07073 * 16 15 4 47 47 H 1.09001 * 109.47468 * 290.00034 * 18 17 2 48 48 H 1.08996 * 109.47029 * 50.00191 * 18 17 2 49 49 H 0.96995 * 120.00244 * 0.02562 * 21 19 18 50 50 H 0.96997 * 120.00002 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2224 5 1 1.3244 -1.4877 -1.5763 6 7 2.4308 0.1560 -2.2946 7 6 2.4364 -0.2619 -3.5759 8 8 2.1418 -1.4089 -3.8413 9 6 2.8046 0.6848 -4.6671 10 8 3.0974 1.8264 -4.4030 11 6 2.8115 0.2174 -6.0998 12 6 3.2219 1.3751 -7.0120 13 6 3.8084 -0.9326 -6.2562 14 6 1.4117 -0.2650 -6.4856 15 6 3.3196 -1.5157 -0.7078 16 6 3.4314 -1.1276 0.7821 17 7 2.0506 -0.7459 1.1745 18 6 2.0592 0.1012 2.3746 19 6 2.3552 -0.7458 3.5854 20 8 2.5412 -1.9379 3.4608 21 7 2.4143 -0.1785 4.8065 22 6 2.6841 -0.9491 5.9080 23 1 2.8497 -2.0104 5.7970 24 6 2.7445 -0.3643 7.1670 25 7 2.5425 0.9271 7.3021 26 14 3.1128 -1.4141 8.6676 27 1 4.5801 -1.4597 8.8916 28 1 2.4483 -0.8259 9.8583 29 1 2.6028 -2.7909 8.4457 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5028 -0.8962 33 1 2.6665 1.0727 -2.0824 34 1 4.2193 1.7183 -6.7370 35 1 3.2274 1.0369 -8.0482 36 1 2.5121 2.1947 -6.9006 37 1 3.5164 -1.7576 -5.6064 38 1 3.8131 -1.2711 -7.2924 39 1 4.8056 -0.5890 -5.9814 40 1 0.7015 0.5544 -6.3742 41 1 1.4166 -0.6027 -7.5220 42 1 1.1197 -1.0899 -5.8357 43 1 3.1896 -2.5931 -0.8093 44 1 4.2045 -1.1887 -1.2537 45 1 3.7733 -1.9781 1.3719 46 1 4.1083 -0.2820 0.9050 47 1 2.8262 0.8689 2.2720 48 1 1.0845 0.5748 2.4920 49 1 2.2659 0.7748 4.9061 50 1 2.5850 1.3353 8.1809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692152422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:27 Heat of formation + Delta-G solvation = -104.049001 kcal Electronic energy + Delta-G solvation = -29959.788507 eV Core-core repulsion = 25794.199913 eV Total energy + Delta-G solvation = -4165.588594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29662 -39.77880 -38.63609 -37.64454 -36.37195 -34.54195 -33.82021 -31.51956 -31.26987 -30.87822 -27.94286 -27.71879 -26.94522 -26.10902 -24.92964 -24.14850 -22.09084 -20.90493 -20.63764 -19.24188 -19.15906 -17.88971 -17.79826 -16.96408 -16.20502 -15.93784 -15.92281 -15.32434 -15.13569 -14.83125 -14.62778 -14.44895 -14.19092 -13.97655 -13.81794 -13.48045 -13.44262 -13.25083 -12.92270 -12.63213 -12.60267 -12.49076 -12.24903 -12.07537 -11.93181 -11.90549 -11.71779 -11.52638 -11.41254 -11.40054 -11.29290 -11.15597 -11.13413 -10.85145 -10.67226 -10.39160 -10.21553 -9.63396 -9.49694 -9.39248 -8.56770 -8.06650 -7.95107 -6.41381 -3.82067 0.61620 2.35888 2.65539 3.17891 3.26526 3.32538 3.68763 3.90631 4.02045 4.15098 4.26002 4.34735 4.40560 4.41898 4.62699 4.84030 4.93656 5.13476 5.15100 5.18793 5.21483 5.24245 5.29361 5.36306 5.36552 5.40592 5.45691 5.51866 5.57580 5.62305 5.68718 5.72988 5.78468 5.84334 5.84835 5.85850 5.92219 6.04953 6.18591 6.19720 6.29580 6.36467 6.46734 7.02717 7.05242 7.15716 7.55583 7.64840 8.06555 8.62302 9.18768 9.54896 10.06935 10.76457 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032002 B = 0.001923 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.733960 B =14553.955633 C =14676.667147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.055 0.945 4 C 0.141 3.859 5 H 0.107 0.893 6 N -0.698 5.698 7 C 0.476 3.524 8 O -0.501 6.501 9 C 0.360 3.640 10 O -0.418 6.418 11 C -0.095 4.095 12 C -0.137 4.137 13 C -0.144 4.144 14 C -0.144 4.144 15 C -0.132 4.132 16 C 0.038 3.962 17 N -0.475 5.475 18 C 0.035 3.965 19 C 0.446 3.554 20 O -0.576 6.576 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.407 0.593 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.039 0.961 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 3.230 -26.841 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 H 0.073 0.927 4 C 0.037 3.963 5 H 0.125 0.875 6 N -0.351 5.351 7 C 0.258 3.742 8 O -0.376 6.376 9 C 0.230 3.770 10 O -0.287 6.287 11 C -0.096 4.096 12 C -0.194 4.194 13 C -0.201 4.201 14 C -0.201 4.201 15 C -0.171 4.171 16 C -0.090 4.090 17 N -0.199 5.199 18 C -0.097 4.097 19 C 0.231 3.769 20 O -0.459 6.459 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.822 1.873 -26.637 26.716 hybrid contribution 0.745 1.483 0.988 1.931 sum -0.077 3.355 -25.650 25.868 Atomic orbital electron populations 1.21718 0.93017 1.03159 1.01490 1.22885 0.96937 0.95761 0.90296 0.92740 1.21935 0.97686 0.91117 0.85579 0.87456 1.46177 1.67383 1.15691 1.05875 1.20891 0.79729 0.89238 0.84303 1.90731 1.45613 1.18346 1.82915 1.25021 0.72522 0.87313 0.92161 1.90419 1.32326 1.20119 1.85831 1.20966 0.99278 0.98298 0.91105 1.21792 1.02207 0.96655 0.98727 1.21920 0.97339 0.97262 1.03628 1.21915 0.92965 1.02248 1.02985 1.22746 0.96961 1.01636 0.95759 1.23164 0.89591 1.01533 0.94724 1.65093 1.18696 1.35549 1.00570 1.22080 1.01968 0.94546 0.91109 1.19652 0.84631 0.88709 0.83899 1.90516 1.54507 1.15338 1.85532 1.41856 1.62333 1.10888 1.05220 1.19691 1.44750 0.94054 0.84211 0.87923 1.25256 0.97513 0.96082 0.99159 1.69607 1.49936 1.09896 1.24977 0.85861 0.78441 0.79770 0.80245 1.20465 1.20944 1.19405 0.91216 0.92007 0.92537 0.75699 0.91962 0.91375 0.91960 0.90043 0.91096 0.92514 0.92526 0.91102 0.90047 0.89880 0.91149 0.88147 0.94253 0.93132 0.89219 0.77558 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.32 37.16 0.35 -1.19 16 2 C 0.05 0.61 2.58 -66.07 -0.17 0.44 16 3 H 0.05 0.60 7.61 -51.93 -0.40 0.21 16 4 C 0.14 1.62 2.96 -66.54 -0.20 1.42 16 5 H 0.11 1.33 7.27 -51.93 -0.38 0.96 16 6 N -0.70 -6.92 5.02 -53.02 -0.27 -7.19 16 7 C 0.48 4.95 7.55 -11.76 -0.09 4.86 16 8 O -0.50 -6.08 13.04 5.49 0.07 -6.01 16 9 C 0.36 3.35 6.03 -29.81 -0.18 3.17 16 10 O -0.42 -4.43 16.09 5.98 0.10 -4.33 16 11 C -0.09 -0.70 0.76 -155.66 -0.12 -0.82 16 12 C -0.14 -0.87 7.76 37.16 0.29 -0.58 16 13 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 14 C -0.14 -0.97 8.29 37.16 0.31 -0.66 16 15 C -0.13 -1.64 6.79 -25.35 -0.17 -1.81 16 16 C 0.04 0.57 5.92 -2.20 -0.01 0.56 16 17 N -0.47 -7.60 4.66 -223.58 -1.04 -8.64 16 18 C 0.03 0.60 5.27 -4.97 -0.03 0.58 16 19 C 0.45 10.42 7.63 -10.99 -0.08 10.33 16 20 O -0.58 -15.43 14.80 5.55 0.08 -15.35 16 21 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 26 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.71 7.35 -51.93 -0.38 0.32 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 3.57 7.84 -40.82 -0.32 3.25 16 34 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 37 H 0.08 0.68 6.43 -51.93 -0.33 0.35 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.66 6.43 -51.93 -0.33 0.33 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 45 H 0.10 1.82 7.24 -51.93 -0.38 1.44 16 46 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 47 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 48 H 0.09 1.42 7.21 -51.93 -0.37 1.04 16 49 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -31.62 402.68 -7.55 -39.17 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.17 Total: 10.64 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.04 Total: 7.68 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.64 Total: -53.91 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.25 Total: -25.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.62 -7.55 -39.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692152422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.874 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds