Wall clock time and date at job start Tue Mar 31 2020 23:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.36779 * 2 1 4 4 C 1.54385 * 110.41003 * 237.65025 * 2 1 3 5 5 H 1.08995 * 110.32619 * 336.14440 * 4 2 1 6 6 N 1.46500 * 110.32284 * 98.25615 * 4 2 1 7 7 C 1.34777 * 119.99886 * 204.99976 * 6 4 2 8 8 O 1.21364 * 119.99589 * 359.97438 * 7 6 4 9 9 C 1.49080 * 119.99917 * 179.97438 * 7 6 4 10 10 O 1.20779 * 120.00392 * 359.97438 * 9 7 6 11 11 C 1.50701 * 119.99782 * 179.97438 * 9 7 6 12 12 C 1.53005 * 109.47250 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47014 * 299.99684 * 11 9 7 14 14 C 1.52999 * 109.47416 * 59.99899 * 11 9 7 15 15 C 1.54266 * 105.05754 * 217.24911 * 4 2 1 16 16 C 1.54375 * 105.06062 * 0.02562 * 15 4 2 17 17 N 1.48556 * 110.50984 * 122.41953 * 2 1 3 18 18 C 1.46901 * 110.99998 * 277.86739 * 17 2 1 19 19 C 1.50701 * 109.47218 * 169.99964 * 18 17 2 20 20 O 1.21291 * 120.00120 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99836 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99715 * 180.02562 * 21 19 18 23 23 H 1.07991 * 120.00202 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99724 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00219 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99560 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46745 * 90.00638 * 26 24 22 28 28 H 1.48504 * 109.46637 * 210.00112 * 26 24 22 29 29 H 1.48493 * 109.47082 * 330.00257 * 26 24 22 30 30 H 1.09003 * 109.47098 * 180.70062 * 1 2 3 31 31 H 1.08995 * 109.47051 * 300.70134 * 1 2 3 32 32 H 1.08997 * 109.46789 * 60.70435 * 1 2 3 33 33 H 0.96999 * 120.00349 * 24.99198 * 6 4 2 34 34 H 1.09003 * 109.46841 * 59.99922 * 12 11 9 35 35 H 1.09002 * 109.47400 * 179.97438 * 12 11 9 36 36 H 1.08992 * 109.46928 * 300.00156 * 12 11 9 37 37 H 1.09002 * 109.47003 * 60.00805 * 13 11 9 38 38 H 1.09005 * 109.47302 * 179.97438 * 13 11 9 39 39 H 1.08996 * 109.47401 * 300.00173 * 13 11 9 40 40 H 1.09004 * 109.46609 * 60.00279 * 14 11 9 41 41 H 1.09002 * 109.47195 * 179.97438 * 14 11 9 42 42 H 1.08994 * 109.47326 * 300.00025 * 14 11 9 43 43 H 1.09001 * 110.32231 * 118.89861 * 15 4 2 44 44 H 1.08996 * 110.32002 * 241.00300 * 15 4 2 45 45 H 1.08996 * 110.41381 * 142.63179 * 16 15 4 46 46 H 1.09007 * 110.41242 * 265.07073 * 16 15 4 47 47 H 1.09001 * 109.47468 * 290.00034 * 18 17 2 48 48 H 1.08996 * 109.47029 * 50.00191 * 18 17 2 49 49 H 0.96995 * 120.00244 * 0.02562 * 21 19 18 50 50 H 0.96997 * 120.00002 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2224 5 1 1.3244 -1.4877 -1.5763 6 7 2.4308 0.1560 -2.2946 7 6 2.4364 -0.2619 -3.5759 8 8 2.1418 -1.4089 -3.8413 9 6 2.8046 0.6848 -4.6671 10 8 3.0974 1.8264 -4.4030 11 6 2.8115 0.2174 -6.0998 12 6 3.2219 1.3751 -7.0120 13 6 3.8084 -0.9326 -6.2562 14 6 1.4117 -0.2650 -6.4856 15 6 3.3196 -1.5157 -0.7078 16 6 3.4314 -1.1276 0.7821 17 7 2.0506 -0.7459 1.1745 18 6 2.0592 0.1012 2.3746 19 6 2.3552 -0.7458 3.5854 20 8 2.5412 -1.9379 3.4608 21 7 2.4143 -0.1785 4.8065 22 6 2.6841 -0.9491 5.9080 23 1 2.8497 -2.0104 5.7970 24 6 2.7445 -0.3643 7.1670 25 7 2.5425 0.9271 7.3021 26 14 3.1128 -1.4141 8.6676 27 1 4.5801 -1.4597 8.8916 28 1 2.4483 -0.8259 9.8583 29 1 2.6028 -2.7909 8.4457 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 -0.3633 0.5028 -0.8962 33 1 2.6665 1.0727 -2.0824 34 1 4.2193 1.7183 -6.7370 35 1 3.2274 1.0369 -8.0482 36 1 2.5121 2.1947 -6.9006 37 1 3.5164 -1.7576 -5.6064 38 1 3.8131 -1.2711 -7.2924 39 1 4.8056 -0.5890 -5.9814 40 1 0.7015 0.5544 -6.3742 41 1 1.4166 -0.6027 -7.5220 42 1 1.1197 -1.0899 -5.8357 43 1 3.1896 -2.5931 -0.8093 44 1 4.2045 -1.1887 -1.2537 45 1 3.7733 -1.9781 1.3719 46 1 4.1083 -0.2820 0.9050 47 1 2.8262 0.8689 2.2720 48 1 1.0845 0.5748 2.4920 49 1 2.2659 0.7748 4.9061 50 1 2.5850 1.3353 8.1809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692152422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:26 Heat of formation + Delta-G solvation = -126.966992 kcal Electronic energy + Delta-G solvation = -29960.782306 eV Core-core repulsion = 25794.199913 eV Total energy + Delta-G solvation = -4166.582393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09498 -40.89482 -39.89032 -39.06607 -37.03082 -35.99910 -35.35917 -33.30365 -32.47011 -32.12908 -28.64419 -28.23849 -28.11612 -27.24057 -25.89509 -25.82351 -22.99266 -21.98372 -21.64111 -20.88804 -20.04098 -19.86997 -18.58643 -17.95462 -17.60107 -16.96704 -16.82713 -16.48967 -16.38153 -16.22313 -15.88234 -15.67907 -15.34607 -15.22257 -14.94312 -14.59396 -14.48835 -14.18379 -13.90849 -13.72764 -13.53685 -13.47196 -13.11978 -13.05521 -12.98399 -12.89687 -12.84677 -12.63707 -12.59873 -12.46960 -12.39552 -12.36495 -12.13451 -12.09555 -11.93450 -11.77895 -11.70221 -11.48127 -10.41740 -10.36555 -10.26557 -10.00076 -9.43096 -8.46150 -5.94446 -0.14772 1.37610 1.41275 1.53282 1.55440 1.85968 2.06661 2.28367 2.71153 3.07024 3.20225 3.32449 3.36945 3.50504 3.71815 3.84517 3.88295 3.98711 4.11012 4.19296 4.27623 4.30387 4.36853 4.38315 4.51522 4.65137 4.67983 4.73356 4.75664 4.83523 4.85701 4.90251 4.93458 4.93792 4.98998 5.01950 5.09290 5.18249 5.22213 5.32355 5.33426 5.37333 5.41581 5.71165 5.81580 5.90767 6.06901 6.27395 6.61592 6.84272 7.14047 7.57594 8.13916 8.71271 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032002 B = 0.001923 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.733960 B =14553.955633 C =14676.667147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.076 0.924 4 C 0.152 3.848 5 H 0.099 0.901 6 N -0.690 5.690 7 C 0.475 3.525 8 O -0.519 6.519 9 C 0.366 3.634 10 O -0.431 6.431 11 C -0.095 4.095 12 C -0.134 4.134 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.123 4.123 16 C 0.039 3.961 17 N -0.499 5.499 18 C 0.048 3.952 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 4.541 -28.383 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 H 0.094 0.906 4 C 0.047 3.953 5 H 0.117 0.883 6 N -0.344 5.344 7 C 0.258 3.742 8 O -0.395 6.395 9 C 0.236 3.764 10 O -0.301 6.301 11 C -0.096 4.096 12 C -0.191 4.191 13 C -0.199 4.199 14 C -0.198 4.198 15 C -0.162 4.162 16 C -0.089 4.089 17 N -0.224 5.224 18 C -0.083 4.083 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.253 0.747 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.129 0.871 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.955 3.222 -28.197 28.397 hybrid contribution 0.780 1.047 1.408 1.920 sum -0.175 4.269 -26.790 27.128 Atomic orbital electron populations 1.21720 0.92193 1.02658 1.02583 1.22932 0.97465 0.96334 0.88589 0.90640 1.21686 0.96791 0.91094 0.85767 0.88268 1.46074 1.67127 1.15784 1.05442 1.21190 0.79223 0.89218 0.84562 1.90734 1.46374 1.19212 1.83204 1.25184 0.71822 0.86757 0.92645 1.90419 1.33101 1.20518 1.86053 1.21053 0.99884 0.98880 0.89828 1.21789 1.01702 0.96050 0.99537 1.21908 0.97105 0.96441 1.04456 1.21902 0.92472 1.01733 1.03725 1.22652 0.98134 1.01361 0.94053 1.23051 0.89593 1.00467 0.95790 1.65004 1.19227 1.36641 1.01489 1.21919 1.03696 0.93756 0.88957 1.20727 0.82498 0.88831 0.84927 1.90491 1.55718 1.17545 1.86337 1.41921 1.63014 1.10906 1.05483 1.19634 1.46971 0.93496 0.85941 0.90429 1.26015 0.96746 0.97328 1.01247 1.69665 1.49756 1.10794 1.25936 0.84947 0.78546 0.77918 0.77046 1.19685 1.19536 1.19887 0.92525 0.92024 0.90328 0.74742 0.92472 0.89403 0.92310 0.91710 0.89204 0.92434 0.92239 0.89241 0.91667 0.90714 0.89826 0.91911 0.93332 0.90893 0.87091 0.77044 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.32 71.98 0.67 -2.09 16 2 C 0.06 1.24 2.58 45.07 0.12 1.36 16 3 H 0.08 1.42 7.61 -2.39 -0.02 1.41 16 4 C 0.15 3.29 2.96 45.89 0.14 3.43 16 5 H 0.10 2.38 7.27 -2.39 -0.02 2.37 16 6 N -0.69 -12.48 5.02 -440.00 -2.21 -14.69 16 7 C 0.47 9.27 7.55 87.16 0.66 9.93 16 8 O -0.52 -12.22 13.04 -3.29 -0.04 -12.26 16 9 C 0.37 6.25 6.03 28.60 0.17 6.42 16 10 O -0.43 -8.42 16.09 -1.51 -0.02 -8.45 16 11 C -0.09 -1.23 0.76 -52.93 -0.04 -1.27 16 12 C -0.13 -1.41 7.76 71.98 0.56 -0.85 16 13 C -0.14 -1.72 8.29 71.98 0.60 -1.12 16 14 C -0.14 -1.64 8.29 71.98 0.60 -1.04 16 15 C -0.12 -3.00 6.79 31.49 0.21 -2.79 16 16 C 0.04 1.19 5.92 86.45 0.51 1.70 16 17 N -0.50 -15.66 4.66 -861.28 -4.01 -19.68 16 18 C 0.05 1.63 5.27 85.56 0.45 2.08 16 19 C 0.44 21.06 7.63 87.66 0.67 21.73 16 20 O -0.62 -34.23 14.80 -3.06 -0.05 -34.28 16 21 N -0.58 -29.51 5.29 -306.99 -1.62 -31.13 16 22 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 23 H 0.08 4.73 7.16 -2.92 -0.02 4.71 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 26 Si 0.99 43.19 29.55 68.60 2.03 45.21 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.28 7.35 -2.39 -0.02 1.26 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 6.32 7.84 -92.71 -0.73 5.59 16 34 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 35 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 37 H 0.06 1.03 6.43 -2.39 -0.02 1.01 16 38 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 1.81 7.95 -2.39 -0.02 1.79 16 45 H 0.06 2.39 7.24 -2.39 -0.02 2.37 16 46 H 0.05 1.37 7.75 -2.38 -0.02 1.35 16 47 H 0.07 2.16 7.77 -2.39 -0.02 2.15 16 48 H 0.11 3.29 7.21 -2.39 -0.02 3.28 16 49 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -69.45 402.68 0.44 -69.00 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.50 Total: 36.47 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.59 Total: 19.17 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -7.56 Total: -114.87 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.11 Total: -54.98 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.45 0.44 -69.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692152422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.964 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds