Wall clock time and date at job start Tue Mar 31 2020 23:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46505 * 119.99669 * 180.02562 * 7 5 3 9 9 H 1.08997 * 110.27645 * 327.08711 * 8 7 5 10 10 C 1.54592 * 110.30846 * 89.28767 * 8 7 5 11 11 C 1.54943 * 102.92141 * 96.95599 * 10 8 7 12 12 N 1.48536 * 103.22625 * 37.41358 * 11 10 8 13 13 C 1.46894 * 110.99687 * 200.27742 * 12 11 10 14 14 C 1.50703 * 109.47528 * 307.39551 * 13 12 11 15 15 O 1.21284 * 119.99962 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99783 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99873 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99811 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47332 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47361 * 119.99928 * 21 19 17 24 24 H 1.48501 * 109.46931 * 239.99928 * 21 19 17 25 25 C 1.47899 * 105.82124 * 320.79402 * 12 11 10 26 26 H 1.09005 * 110.07676 * 265.88692 * 25 12 11 27 27 C 1.52995 * 109.91883 * 144.68621 * 25 12 11 28 28 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 29 29 C 1.53004 * 117.49448 * 8.61920 * 28 3 2 30 30 C 1.53004 * 59.99990 * 252.51301 * 29 28 3 31 31 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 34 34 H 0.97004 * 120.00047 * 0.02562 * 7 5 3 35 35 H 1.09003 * 110.72591 * 215.30992 * 10 8 7 36 36 H 1.09000 * 110.72530 * 338.60066 * 10 8 7 37 37 H 1.08998 * 110.66674 * 278.97844 * 11 10 8 38 38 H 1.09003 * 110.80944 * 155.91595 * 11 10 8 39 39 H 1.09003 * 109.47334 * 67.40268 * 13 12 11 40 40 H 1.09002 * 109.47182 * 187.39711 * 13 12 11 41 41 H 0.96997 * 120.00115 * 0.02562 * 16 14 13 42 42 H 0.96991 * 120.00348 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.46382 * 302.40670 * 27 25 12 44 44 H 1.08993 * 109.47228 * 62.40482 * 27 25 12 45 45 H 1.09002 * 109.47236 * 182.41155 * 27 25 12 46 46 H 1.08992 * 115.55153 * 154.32581 * 28 3 2 47 47 H 1.08999 * 117.50345 * 0.02562 * 29 28 3 48 48 H 1.08998 * 117.49158 * 145.02241 * 29 28 3 49 49 H 1.08996 * 117.49717 * 252.51373 * 30 29 28 50 50 H 1.08990 * 117.51731 * 107.48545 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8571 3.4585 -3.0499 9 1 3.1726 2.6233 -3.6751 10 6 1.5564 4.0845 -3.6034 11 6 1.7842 5.6021 -3.3899 12 7 3.2306 5.7730 -3.6814 13 6 3.7445 7.0136 -3.0859 14 6 2.8794 8.1716 -3.5122 15 8 1.9280 7.9820 -4.2401 16 7 3.1624 9.4177 -3.0837 17 6 2.3756 10.4713 -3.4721 18 1 1.5290 10.3025 -4.1209 19 6 2.6676 11.7560 -3.0308 20 7 3.6982 11.9614 -2.2416 21 14 1.5953 13.1914 -3.5593 22 1 0.5077 12.6981 -4.4419 23 1 1.0051 13.8366 -2.3591 24 1 2.4209 14.1806 -4.2975 25 6 3.9013 4.5892 -3.1017 26 1 4.2548 4.8147 -2.0955 27 6 5.0781 4.1718 -3.9859 28 6 3.3589 1.2633 0.7213 29 6 3.9138 -0.1109 1.1019 30 6 3.3634 0.8187 2.1853 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 2.8475 3.6151 -0.9323 35 1 1.4395 3.8573 -4.6630 36 1 0.6913 3.7408 -3.0363 37 1 1.5634 5.8832 -2.3602 38 1 1.1801 6.1858 -4.0846 39 1 3.7286 6.9289 -1.9993 40 1 4.7677 7.1814 -3.4222 41 1 3.9230 9.5693 -2.5013 42 1 3.9023 12.8583 -1.9339 43 1 4.7197 3.9671 -4.9948 44 1 5.8123 4.9768 -4.0175 45 1 5.5405 3.2741 -3.5754 46 1 4.0740 2.0311 0.4263 47 1 3.3183 -0.9848 0.8380 48 1 4.9943 -0.2472 1.0571 49 1 4.0818 1.2938 2.8533 50 1 2.4056 0.5567 2.6347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692159108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:14 Heat of formation + Delta-G solvation = -76.747669 kcal Electronic energy + Delta-G solvation = -30229.286805 eV Core-core repulsion = 26064.882085 eV Total energy + Delta-G solvation = -4164.404720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65713 -39.47385 -38.20564 -37.41626 -36.45000 -34.43835 -33.84386 -31.52779 -31.21029 -31.01591 -29.09714 -26.78733 -26.23323 -24.97381 -24.12871 -22.69522 -22.09308 -21.15474 -20.45997 -20.12037 -19.24755 -17.93438 -17.82684 -17.10170 -16.68413 -16.06120 -15.83425 -15.48486 -15.11645 -14.97158 -14.76992 -14.54258 -14.30165 -14.05008 -13.80675 -13.78779 -13.56445 -13.26728 -12.92018 -12.53681 -12.23702 -11.97768 -11.93095 -11.89184 -11.69855 -11.66376 -11.46873 -11.36444 -11.16942 -11.13850 -10.98363 -10.85357 -10.76018 -10.62327 -10.53610 -10.36689 -10.27016 -9.55068 -9.45163 -9.17836 -8.43714 -8.06603 -7.94405 -6.46633 -3.87505 2.36166 2.76275 3.12767 3.23960 3.30844 3.34877 3.50963 3.83963 4.01091 4.19243 4.25616 4.39730 4.50218 4.51054 4.73365 4.75673 4.81656 4.94166 5.00200 5.05724 5.12868 5.15395 5.20792 5.32563 5.34078 5.39090 5.42818 5.52471 5.52511 5.63918 5.71128 5.73637 5.84062 5.91332 5.92600 5.96035 6.01080 6.18250 6.19892 6.30649 6.40388 6.62487 6.67772 7.17768 7.23871 7.31610 7.51126 8.01334 8.03036 8.56333 9.13269 9.48535 10.00016 10.71077 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.002224 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.912145 B =12585.147058 C =12812.365276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.104 3.896 4 H 0.090 0.910 5 C 0.496 3.504 6 O -0.523 6.523 7 N -0.721 5.721 8 C 0.137 3.863 9 H 0.099 0.901 10 C -0.134 4.134 11 C 0.039 3.961 12 N -0.488 5.488 13 C 0.038 3.962 14 C 0.442 3.558 15 O -0.580 6.580 16 N -0.562 5.562 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.055 3.945 26 H 0.055 0.945 27 C -0.132 4.132 28 C -0.164 4.164 29 C -0.158 4.158 30 C -0.168 4.168 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.398 0.602 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.120 0.880 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -20.852 9.365 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.042 3.958 4 H 0.107 0.893 5 C 0.281 3.719 6 O -0.398 6.398 7 N -0.374 5.374 8 C 0.032 3.968 9 H 0.117 0.883 10 C -0.173 4.173 11 C -0.088 4.088 12 N -0.213 5.213 13 C -0.094 4.094 14 C 0.227 3.773 15 O -0.464 6.464 16 N -0.198 5.198 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.055 4.055 26 H 0.073 0.927 27 C -0.190 4.190 28 C -0.182 4.182 29 C -0.194 4.194 30 C -0.205 4.205 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.138 0.862 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.137 0.863 47 H 0.126 0.874 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.459 -21.490 7.723 22.840 hybrid contribution -0.138 1.589 1.453 2.157 sum 0.320 -19.901 9.175 21.917 Atomic orbital electron populations 1.22885 0.80448 1.03318 1.00186 1.87969 1.20108 1.24747 1.94375 1.21430 0.95421 0.86892 0.92039 0.89273 1.21202 0.77126 0.81667 0.91912 1.90715 1.49364 1.53755 1.45919 1.46237 1.67979 1.14318 1.08891 1.21930 0.95605 0.96986 0.82283 0.88267 1.22972 0.96413 0.95964 1.01931 1.23500 0.89887 0.94764 1.00646 1.64602 1.03773 0.99463 1.53427 1.22099 0.99875 0.90488 0.96944 1.19685 0.87789 0.83913 0.85874 1.90442 1.31637 1.83865 1.40480 1.41859 1.28320 1.05391 1.44216 1.19748 1.09881 0.85114 1.28046 0.87821 1.25270 0.97131 0.98903 0.96630 1.69614 1.27424 1.23111 1.34094 0.85803 0.79674 0.80507 0.78393 1.19198 1.20762 1.20704 1.22706 0.94695 0.90771 0.97308 0.92740 1.21711 0.96521 1.00537 1.00275 1.22263 0.96507 1.01282 0.98158 1.22889 1.00808 0.93934 1.01812 1.22970 1.03308 1.03759 0.90496 0.93897 0.89123 0.93488 0.76751 0.89968 0.91282 0.94800 0.86186 0.93516 0.89192 0.77476 0.91881 0.91520 0.92167 0.92686 0.86270 0.87364 0.88751 0.88378 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.36 -3.72 8.24 -55.09 -0.45 -4.17 16 3 C 0.10 0.96 2.87 -27.88 -0.08 0.88 16 4 H 0.09 0.65 7.79 -51.93 -0.40 0.25 16 5 C 0.50 5.85 7.12 -10.99 -0.08 5.77 16 6 O -0.52 -8.28 16.16 -14.30 -0.23 -8.52 16 7 N -0.72 -7.46 4.95 -52.49 -0.26 -7.72 16 8 C 0.14 1.67 2.98 -66.57 -0.20 1.47 16 9 H 0.10 1.32 7.10 -51.93 -0.37 0.95 16 10 C -0.13 -1.83 6.78 -24.87 -0.17 -2.00 16 11 C 0.04 0.64 5.31 -1.89 -0.01 0.63 16 12 N -0.49 -7.80 4.89 -224.00 -1.10 -8.90 16 13 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 14 C 0.44 10.06 7.49 -10.98 -0.08 9.97 16 15 O -0.58 -14.94 13.09 5.55 0.07 -14.87 16 16 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 17 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.05 0.67 2.86 -66.64 -0.19 0.48 16 26 H 0.05 0.61 7.07 -51.93 -0.37 0.24 16 27 C -0.13 -1.49 9.32 37.16 0.35 -1.15 16 28 C -0.16 -1.27 5.68 -90.61 -0.51 -1.78 16 29 C -0.16 -1.23 9.87 -26.73 -0.26 -1.50 16 30 C -0.17 -1.10 10.19 -26.73 -0.27 -1.37 16 31 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 3.27 8.34 -40.82 -0.34 2.93 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.03 0.55 8.02 -51.93 -0.42 0.14 16 38 H 0.12 2.39 5.96 -51.93 -0.31 2.08 16 39 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.12 0.82 8.03 -51.93 -0.42 0.40 16 47 H 0.11 0.98 7.06 -51.93 -0.37 0.61 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 406.61 15.07 6.13 6.13 Total: -1.00 -32.52 406.61 -9.18 -41.70 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.29 Total: 12.36 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.69 Total: 5.56 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.69 Total: -53.88 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.61 Total: -27.56 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.52 -9.18 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692159108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.049 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds