Wall clock time and date at job start Tue Mar 31 2020 23:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46505 * 119.99669 * 180.02562 * 7 5 3 9 9 H 1.08997 * 110.27645 * 327.08711 * 8 7 5 10 10 C 1.54592 * 110.30846 * 89.28767 * 8 7 5 11 11 C 1.54943 * 102.92141 * 96.95599 * 10 8 7 12 12 N 1.48536 * 103.22625 * 37.41358 * 11 10 8 13 13 C 1.46894 * 110.99687 * 200.27742 * 12 11 10 14 14 C 1.50703 * 109.47528 * 307.39551 * 13 12 11 15 15 O 1.21284 * 119.99962 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99783 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99873 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99811 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47332 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47361 * 119.99928 * 21 19 17 24 24 H 1.48501 * 109.46931 * 239.99928 * 21 19 17 25 25 C 1.47899 * 105.82124 * 320.79402 * 12 11 10 26 26 H 1.09005 * 110.07676 * 265.88692 * 25 12 11 27 27 C 1.52995 * 109.91883 * 144.68621 * 25 12 11 28 28 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 29 29 C 1.53004 * 117.49448 * 8.61920 * 28 3 2 30 30 C 1.53004 * 59.99990 * 252.51301 * 29 28 3 31 31 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 32 32 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 34 34 H 0.97004 * 120.00047 * 0.02562 * 7 5 3 35 35 H 1.09003 * 110.72591 * 215.30992 * 10 8 7 36 36 H 1.09000 * 110.72530 * 338.60066 * 10 8 7 37 37 H 1.08998 * 110.66674 * 278.97844 * 11 10 8 38 38 H 1.09003 * 110.80944 * 155.91595 * 11 10 8 39 39 H 1.09003 * 109.47334 * 67.40268 * 13 12 11 40 40 H 1.09002 * 109.47182 * 187.39711 * 13 12 11 41 41 H 0.96997 * 120.00115 * 0.02562 * 16 14 13 42 42 H 0.96991 * 120.00348 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.46382 * 302.40670 * 27 25 12 44 44 H 1.08993 * 109.47228 * 62.40482 * 27 25 12 45 45 H 1.09002 * 109.47236 * 182.41155 * 27 25 12 46 46 H 1.08992 * 115.55153 * 154.32581 * 28 3 2 47 47 H 1.08999 * 117.50345 * 0.02562 * 29 28 3 48 48 H 1.08998 * 117.49158 * 145.02241 * 29 28 3 49 49 H 1.08996 * 117.49717 * 252.51373 * 30 29 28 50 50 H 1.08990 * 117.51731 * 107.48545 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8571 3.4585 -3.0499 9 1 3.1726 2.6233 -3.6751 10 6 1.5564 4.0845 -3.6034 11 6 1.7842 5.6021 -3.3899 12 7 3.2306 5.7730 -3.6814 13 6 3.7445 7.0136 -3.0859 14 6 2.8794 8.1716 -3.5122 15 8 1.9280 7.9820 -4.2401 16 7 3.1624 9.4177 -3.0837 17 6 2.3756 10.4713 -3.4721 18 1 1.5290 10.3025 -4.1209 19 6 2.6676 11.7560 -3.0308 20 7 3.6982 11.9614 -2.2416 21 14 1.5953 13.1914 -3.5593 22 1 0.5077 12.6981 -4.4419 23 1 1.0051 13.8366 -2.3591 24 1 2.4209 14.1806 -4.2975 25 6 3.9013 4.5892 -3.1017 26 1 4.2548 4.8147 -2.0955 27 6 5.0781 4.1718 -3.9859 28 6 3.3589 1.2633 0.7213 29 6 3.9138 -0.1109 1.1019 30 6 3.3634 0.8187 2.1853 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 2.8475 3.6151 -0.9323 35 1 1.4395 3.8573 -4.6630 36 1 0.6913 3.7408 -3.0363 37 1 1.5634 5.8832 -2.3602 38 1 1.1801 6.1858 -4.0846 39 1 3.7286 6.9289 -1.9993 40 1 4.7677 7.1814 -3.4222 41 1 3.9230 9.5693 -2.5013 42 1 3.9023 12.8583 -1.9339 43 1 4.7197 3.9671 -4.9948 44 1 5.8123 4.9768 -4.0175 45 1 5.5405 3.2741 -3.5754 46 1 4.0740 2.0311 0.4263 47 1 3.3183 -0.9848 0.8380 48 1 4.9943 -0.2472 1.0571 49 1 4.0818 1.2938 2.8533 50 1 2.4056 0.5567 2.6347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692159108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:13 Heat of formation + Delta-G solvation = -100.123811 kcal Electronic energy + Delta-G solvation = -30230.300471 eV Core-core repulsion = 26064.882085 eV Total energy + Delta-G solvation = -4165.418385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62110 -40.69113 -39.52689 -38.55898 -37.08087 -36.05451 -35.26719 -33.34266 -32.38590 -32.25627 -29.90745 -28.07353 -27.25919 -25.99510 -25.80388 -23.25139 -23.01917 -22.10752 -21.49610 -21.19323 -20.82814 -19.85350 -18.70147 -18.01895 -17.61597 -17.39203 -16.87626 -16.59732 -16.45615 -16.23234 -15.91952 -15.74455 -15.64679 -15.20860 -15.10988 -15.03779 -14.45500 -14.22574 -14.01756 -13.82589 -13.66379 -13.52686 -12.97859 -12.94910 -12.70200 -12.58495 -12.48384 -12.40956 -12.40328 -12.31661 -12.25808 -12.20931 -12.10859 -11.77571 -11.71146 -11.45887 -11.36357 -11.11157 -10.31898 -10.24798 -10.07467 -9.98947 -9.33753 -8.46879 -5.94873 1.35952 1.41917 1.47384 1.55357 1.91212 2.04698 2.28414 2.66299 2.84306 2.93834 3.20446 3.27599 3.47122 3.55463 3.73455 3.80200 3.92493 4.03097 4.14107 4.18739 4.23742 4.28331 4.33120 4.37221 4.44845 4.46244 4.48184 4.51860 4.57481 4.74923 4.79375 4.81320 4.86444 4.91217 5.00321 5.01858 5.05154 5.22565 5.25721 5.35925 5.36334 5.41097 5.45321 5.85748 5.94117 5.97402 6.12800 6.46838 6.61109 7.13717 7.15570 7.56309 8.12453 8.70721 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.002224 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.912145 B =12585.147058 C =12812.365276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.374 6.374 3 C 0.105 3.895 4 H 0.112 0.888 5 C 0.496 3.504 6 O -0.568 6.568 7 N -0.707 5.707 8 C 0.146 3.854 9 H 0.091 0.909 10 C -0.125 4.125 11 C 0.045 3.955 12 N -0.505 5.505 13 C 0.049 3.951 14 C 0.439 3.561 15 O -0.614 6.614 16 N -0.572 5.572 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.060 3.940 26 H 0.079 0.921 27 C -0.130 4.130 28 C -0.169 4.169 29 C -0.171 4.171 30 C -0.151 4.151 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.114 0.886 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -21.018 11.332 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.291 6.291 3 C 0.044 3.956 4 H 0.129 0.871 5 C 0.282 3.718 6 O -0.447 6.447 7 N -0.361 5.361 8 C 0.041 3.959 9 H 0.109 0.891 10 C -0.165 4.165 11 C -0.082 4.082 12 N -0.230 5.230 13 C -0.082 4.082 14 C 0.227 3.773 15 O -0.500 6.500 16 N -0.209 5.209 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.049 4.049 26 H 0.096 0.904 27 C -0.188 4.188 28 C -0.188 4.188 29 C -0.208 4.208 30 C -0.188 4.188 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.149 0.851 47 H 0.109 0.891 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.572 -21.650 9.728 23.787 hybrid contribution -0.505 1.565 0.811 1.833 sum 1.067 -20.085 10.539 22.708 Atomic orbital electron populations 1.23012 0.79563 1.04193 1.00438 1.87958 1.21233 1.25636 1.94291 1.21554 0.96764 0.86895 0.90381 0.87065 1.21763 0.75964 0.81360 0.92666 1.90697 1.51415 1.55042 1.47507 1.46096 1.67264 1.14240 1.08545 1.21710 0.94506 0.96546 0.83178 0.89083 1.22861 0.97561 0.94278 1.01752 1.23234 0.89929 0.95709 0.99343 1.64568 1.03665 1.00280 1.54483 1.21997 0.99173 0.88513 0.98489 1.20722 0.87557 0.84656 0.84374 1.90450 1.33317 1.84585 1.41692 1.41914 1.28437 1.05702 1.44892 1.19659 1.10355 0.86744 1.29115 0.90390 1.25991 0.98214 1.00645 0.96345 1.69666 1.28117 1.23980 1.34321 0.84912 0.77965 0.77502 0.78222 1.19922 1.19581 1.19734 1.22749 0.94566 0.88935 0.98618 0.90351 1.21710 0.96032 1.01525 0.99529 1.22335 0.95888 1.01474 0.99072 1.22898 1.01121 0.93573 1.03211 1.23033 1.03597 1.02301 0.89897 0.91658 0.88137 0.95084 0.75078 0.90758 0.91005 0.94757 0.90333 0.90791 0.87214 0.76978 0.91324 0.92703 0.91787 0.90719 0.85060 0.89069 0.87935 0.86737 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.59 16 2 O -0.37 -7.45 8.24 -129.99 -1.07 -8.52 16 3 C 0.11 1.74 2.87 29.85 0.09 1.83 16 4 H 0.11 1.33 7.79 -2.39 -0.02 1.31 16 5 C 0.50 11.03 7.12 87.66 0.62 11.66 16 6 O -0.57 -17.91 16.16 15.96 0.26 -17.65 16 7 N -0.71 -13.14 4.95 -438.36 -2.17 -15.30 16 8 C 0.15 3.36 2.98 45.87 0.14 3.50 16 9 H 0.09 2.33 7.10 -2.39 -0.02 2.32 16 10 C -0.13 -3.42 6.78 31.80 0.22 -3.20 16 11 C 0.05 1.49 5.31 86.65 0.46 1.95 16 12 N -0.50 -15.55 4.89 -862.59 -4.22 -19.77 16 13 C 0.05 1.61 5.52 85.56 0.47 2.08 16 14 C 0.44 20.12 7.49 87.66 0.66 20.77 16 15 O -0.61 -32.67 13.09 -3.04 -0.04 -32.71 16 16 N -0.57 -28.45 5.29 -306.99 -1.62 -30.08 16 17 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -48.63 13.05 21.66 0.28 -48.34 16 21 Si 0.99 42.36 29.55 68.60 2.03 44.38 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.06 1.33 2.86 45.06 0.13 1.46 16 26 H 0.08 1.42 7.07 -2.38 -0.02 1.40 16 27 C -0.13 -2.61 9.32 71.98 0.67 -1.94 16 28 C -0.17 -2.20 5.68 -10.79 -0.06 -2.27 16 29 C -0.17 -2.39 9.87 30.60 0.30 -2.09 16 30 C -0.15 -1.56 10.19 30.60 0.31 -1.25 16 31 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.41 5.45 8.34 -92.71 -0.77 4.68 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 38 H 0.08 3.27 5.96 -2.39 -0.01 3.26 16 39 H 0.07 2.04 7.82 -2.39 -0.02 2.02 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 42 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.13 1.37 8.03 -2.39 -0.02 1.35 16 47 H 0.09 1.60 7.06 -2.39 -0.02 1.58 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.29 406.61 -0.59 -72.88 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -0.55 Total: 38.68 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.51 Total: 16.44 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -7.73 Total: -113.50 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -0.85 Total: -58.89 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.29 -0.59 -72.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692159108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.243 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds